Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 2.2e-199 698.7 355 100.0
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 2.0e-187 659.1 354 93.2
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 1.7e-186 656.0 351 95.2
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.7e-186 656.0 355 94.1
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 1.8e-180 636.0 354 91.5
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 5.0e-175 617.8 351 89.5
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 4.6e-168 594.7 353 86.1
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 6.0e-168 594.3 354 85.0
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.3e-167 593.2 353 85.8
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 6.6e-167 590.9 346 86.4
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 1.1e-164 583.6 352 84.4
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 2.3e-164 582.4 328 87.5
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 2.3e-164 582.4 348 83.0
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 3.1e-164 582.0 339 85.5
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 5.2e-164 581.3 329 86.9
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 8.9e-164 580.5 329 88.1
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 1.2e-163 580.1 326 88.7
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 1.5e-163 579.7 350 82.6
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 2.0e-163 579.3 343 85.4
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 3.4e-163 578.6 347 83.9
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 4.4e-163 578.2 346 83.8
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 9.8e-163 577.0 346 83.8
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 9.8e-163 577.0 329 86.3
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 9.8e-163 577.0 325 88.6
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 1.7e-162 576.2 346 83.5
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 2.2e-162 575.9 346 83.5
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 4.9e-162 574.7 351 82.9
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 4.9e-162 574.7 325 88.3
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 6.4e-162 574.3 329 86.6
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 6.4e-162 574.3 346 83.5
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 6.4e-162 574.3 329 86.6
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 8.3e-162 573.9 325 87.4
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 1.4e-161 573.2 336 84.2
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 1.9e-161 572.8 326 86.8
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 2.4e-161 572.4 329 86.3
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 3.2e-161 572.0 329 86.3
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 3.2e-161 572.0 350 80.9
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 3.2e-161 572.0 340 84.1
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 3.2e-161 572.0 329 86.6
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 4.1e-161 571.6 349 83.1
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 5.4e-161 571.2 298 97.0
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 7.0e-161 570.9 328 86.0
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 1.2e-160 570.1 343 83.4
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 1.6e-160 569.7 354 81.4
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 2.1e-160 569.3 330 84.5
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 3.5e-160 568.5 329 85.7
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 6.0e-160 567.8 349 82.2
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 6.0e-160 567.8 349 82.2
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.0e-159 567.0 329 85.7
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 1.0e-159 567.0 350 82.0
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.0e-159 567.0 351 80.6
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.0e-159 567.0 357 80.7
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 1.3e-159 566.6 349 82.2
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 1.7e-159 566.2 358 79.6
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 5.1e-159 564.7 349 82.8
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 5.1e-159 564.7 329 84.8
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.1e-158 563.5 383 76.0
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 1.5e-158 563.1 324 85.8
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 3.3e-158 562.0 340 81.8
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 5.6e-158 561.2 349 79.7
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 5.6e-158 561.2 352 79.8
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 1.6e-157 559.7 344 80.8
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 2.1e-157 559.3 339 81.1
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 8.1e-157 557.4 350 80.0
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 8.1e-157 557.4 344 80.5
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 8.1e-157 557.4 326 85.3
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.1e-156 557.0 326 85.3
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.1e-156 557.0 328 83.5
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.1e-156 557.0 328 83.5
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 1.8e-156 556.2 348 79.6
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.3e-156 555.8 326 85.0
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 2.3e-156 555.8 372 76.9
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.2e-156 554.7 326 85.0
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.2e-156 554.7 326 85.0
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 6.8e-156 554.3 345 80.0
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 6.8e-156 554.3 328 83.8
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.2e-155 553.5 344 80.8
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 2.0e-155 552.7 328 84.1
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 4.4e-155 551.6 329 83.0
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 7.5e-155 550.8 326 82.8
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 2.2e-154 549.3 328 83.5
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 3.7e-154 548.5 326 83.1
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 4.9e-154 548.1 332 81.9
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 4.9e-154 548.1 351 78.1
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 6.4e-154 547.7 330 82.1
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 8.3e-154 547.4 329 82.1
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.4e-153 544.7 368 76.6
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 5.4e-153 544.7 344 80.5
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 9.2e-153 543.9 327 82.6
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 1.6e-152 543.1 329 82.7
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 1.6e-152 543.1 344 80.2
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 4.6e-152 541.6 332 81.0
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 6.0e-152 541.2 356 77.0
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 1.3e-151 540.0 356 78.7
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 8.6e-151 537.3 323 82.7
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 2.8e-149 532.3 344 77.6
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 6.2e-149 531.2 330 79.4
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 8.1e-149 530.8 347 78.4
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 2.4e-148 529.3 328 79.0
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 8.9e-148 527.3 329 78.1
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.5e-147 526.6 374 73.8
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 4.4e-147 525.0 323 79.9
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.3e-146 523.5 301 85.4
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 5.1e-143 511.5 407 67.3
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.2e-141 506.9 400 68.0
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 4.7e-141 505.0 332 72.9
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 2.6e-139 499.2 348 73.0
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 2.9e-138 495.7 347 74.4
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 9.3e-137 490.7 325 75.7
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 1.2e-136 490.3 351 71.8
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 4.6e-136 488.4 289 84.1
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 7.8e-136 487.6 357 69.5
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 5.4e-129 464.9 338 67.5
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 7.1e-129 464.5 325 70.2
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 9.3e-129 464.2 356 69.4
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 6.7e-127 458.0 324 68.8
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 8.7e-127 457.6 260 88.1
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 2.8e-125 452.6 324 68.8
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 8.1e-125 451.1 324 68.5
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 3.1e-124 449.1 307 73.3
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.2e-123 447.2 302 72.8
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 1.1e-121 440.7 286 80.1
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 1.9e-121 439.9 328 65.2
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.7e-120 436.0 364 63.7
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.9e-119 432.2 260 82.7
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 1.3e-117 427.2 325 63.4
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.1e-113 414.1 328 67.1
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.9e-113 413.3 328 67.7
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 2.5e-113 412.9 307 64.2
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 1.8e-111 406.8 245 82.9
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 1.5e-110 403.7 243 83.5
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 9.7e-110 401.0 243 83.1
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.6e-109 400.2 300 66.0
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 5.9e-107 391.7 273 69.2
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.0e-106 391.0 238 81.1
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 8.5e-106 387.9 367 56.9
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.5e-102 377.1 304 64.5
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 4.3e-102 375.6 238 76.9
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 4.1e-100 369.0 354 58.2
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.6e-99 366.3 244 76.6
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 2.9e-98 362.8 320 57.5
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.4e-97 360.5 233 75.5
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 2.1e-88 330.1 199 83.9
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 9.1e-76 288.1 203 75.9
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.7e-75 286.6 286 58.0
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.1e-64 250.4 139 90.6
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 2.8e-64 250.0 271 49.8
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.4e-60 237.7 161 69.6
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 2.0e-59 233.8 156 71.2
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 2.3e-55 220.3 129 83.7
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 3.4e-54 216.5 253 53.0
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 7.5e-54 215.3 356 43.3
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 5.6e-49 199.1 113 84.1
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 7.1e-44 182.2 233 39.5
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 3.3e-41 173.3 217 45.2
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 6.2e-40 169.1 104 78.8
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 2.3e-39 167.2 88 90.9
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 2.9e-37 160.2 100 73.0
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.4e-36 157.1 92 81.5
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 7.8e-35 152.1 98 73.5
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.9e-34 149.8 96 81.2
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 4.7e-32 142.9 110 70.9
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 1.5e-30 137.9 76 86.8
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 6.4e-29 132.5 189 49.7
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 1.9e-28 131.0 85 70.6
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 1.3e-21 108.2 58 82.8
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 2.4e-20 104.0 76 64.5
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 3.2e-20 103.6 63 85.7
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 5.4e-20 102.8 72 61.1
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 3.5e-19 100.1 76 61.8
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 1.3e-18 98.2 73 64.4
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 5.1e-18 96.3 62 79.0
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 6.2e-16 89.4 78 67.9
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 1.3e-08 65.1 50 66.0


User provided reference genes

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