Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 2.9e-54 215.3 136 100.0
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 8.1e-41 170.6 88 93.2
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.1e-40 170.2 90 90.0
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 2.4e-40 169.1 88 92.0
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 1.5e-39 166.4 88 90.9
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 2.0e-39 166.0 88 89.8
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 5.8e-39 164.5 88 88.6
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.4e-37 159.8 88 85.2
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.4e-37 159.8 88 85.2
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 5.5e-37 157.9 88 84.1
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 7.1e-37 157.5 88 81.8
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 1.2e-36 156.8 90 80.0
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 1.6e-36 156.4 88 81.8
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 2.1e-36 156.0 88 81.8
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 2.1e-36 156.0 88 81.8
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.1e-36 156.0 88 81.8
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 2.1e-36 156.0 88 81.8
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 3.5e-36 155.2 88 81.8
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 3.5e-36 155.2 88 83.0
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 3.5e-36 155.2 88 81.8
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 3.5e-36 155.2 88 81.8
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 3.5e-36 155.2 89 79.8
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 3.5e-36 155.2 88 81.8
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 4.6e-36 154.8 88 81.8
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 4.6e-36 154.8 88 81.8
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 4.6e-36 154.8 88 81.8
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 4.6e-36 154.8 88 81.8
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 4.6e-36 154.8 88 81.8
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 4.6e-36 154.8 88 80.7
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 4.6e-36 154.8 88 83.0
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 4.6e-36 154.8 88 83.0
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 6.0e-36 154.5 88 80.7
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 7.9e-36 154.1 88 81.8
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 7.9e-36 154.1 88 81.8
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 7.9e-36 154.1 88 80.7
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 1.0e-35 153.7 88 80.7
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 1.0e-35 153.7 88 80.7
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 1.0e-35 153.7 90 77.8
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 1.3e-35 153.3 88 81.8
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 1.3e-35 153.3 88 81.8
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.8e-35 152.9 88 80.7
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.8e-35 152.9 88 81.8
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.8e-35 152.9 88 79.5
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 2.3e-35 152.5 88 79.5
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 2.3e-35 152.5 90 77.8
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 2.3e-35 152.5 88 79.5
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 2.3e-35 152.5 88 79.5
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 3.0e-35 152.1 88 80.7
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 3.0e-35 152.1 88 80.7
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.9e-35 151.8 88 78.4
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 3.9e-35 151.8 88 80.7
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 5.1e-35 151.4 88 79.5
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 5.1e-35 151.4 88 78.4
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 6.7e-35 151.0 91 78.0
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 6.7e-35 151.0 88 79.5
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 6.7e-35 151.0 88 79.5
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 6.7e-35 151.0 88 79.5
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 6.7e-35 151.0 88 79.5
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 6.7e-35 151.0 88 77.3
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 6.7e-35 151.0 88 80.7
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 8.7e-35 150.6 88 78.4
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 8.7e-35 150.6 88 80.7
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 8.7e-35 150.6 88 78.4
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 8.7e-35 150.6 91 78.0
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 1.1e-34 150.2 88 79.5
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.1e-34 150.2 90 77.8
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 1.1e-34 150.2 88 79.5
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.1e-34 150.2 88 79.5
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.1e-34 150.2 88 79.5
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 1.1e-34 150.2 88 79.5
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 1.5e-34 149.8 88 79.5
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 1.5e-34 149.8 95 72.6
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.5e-34 149.8 88 75.0
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 1.5e-34 149.8 88 77.3
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 1.5e-34 149.8 89 78.7
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 1.9e-34 149.4 88 77.3
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 2.5e-34 149.1 88 79.5
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 2.5e-34 149.1 88 78.4
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 2.5e-34 149.1 88 76.1
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 3.3e-34 148.7 88 78.4
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 3.3e-34 148.7 88 80.7
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 3.3e-34 148.7 88 77.3
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 3.3e-34 148.7 88 77.3
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 4.3e-34 148.3 85 80.0
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 4.3e-34 148.3 88 77.3
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 4.3e-34 148.3 88 77.3
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 4.3e-34 148.3 88 79.5
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 4.3e-34 148.3 88 79.5
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 4.3e-34 148.3 90 76.7
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.3e-34 148.3 90 76.7
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 4.3e-34 148.3 88 79.5
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.6e-34 147.9 90 76.7
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 5.6e-34 147.9 88 77.3
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 5.6e-34 147.9 88 75.0
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 7.4e-34 147.5 88 78.4
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 9.6e-34 147.1 88 77.3
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 9.6e-34 147.1 88 75.0
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 2.1e-33 146.0 88 77.3
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 2.8e-33 145.6 88 77.3
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.8e-33 145.6 90 75.6
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.8e-33 145.6 90 75.6
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 4.8e-33 144.8 88 77.3
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 4.8e-33 144.8 95 69.5
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 6.2e-33 144.4 88 78.4
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 8.2e-33 144.1 88 77.3
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 1.1e-32 143.7 88 77.3
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.4e-32 143.3 88 76.1
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 2.4e-32 142.5 88 73.9
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 2.4e-32 142.5 90 73.3
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 3.1e-32 142.1 88 73.9
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 4.0e-32 141.7 95 66.3
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 4.0e-32 141.7 88 76.1
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 5.3e-32 141.4 85 74.1
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 6.9e-32 141.0 88 75.0
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 9.0e-32 140.6 88 72.7
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 9.0e-32 140.6 88 73.9
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 1.5e-31 139.8 95 67.4
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 2.0e-31 139.4 95 67.4
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.6e-31 139.0 90 71.1
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 4.5e-31 138.3 85 74.1
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 4.5e-31 138.3 88 72.7
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 7.6e-31 137.5 73 89.0
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.0e-30 137.1 92 66.3
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.0e-30 137.1 88 72.7
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 2.2e-30 136.0 90 70.0
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 2.9e-30 135.6 92 65.2
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 4.9e-30 134.8 84 71.4
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 1.4e-29 133.3 92 65.2
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 1.4e-29 133.3 76 82.9
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.9e-29 132.9 88 68.2
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 4.2e-29 131.7 76 78.9
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 7.1e-29 131.0 77 81.8
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.2e-28 130.2 76 81.6
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.1e-28 129.4 95 63.2
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 1.3e-27 126.7 88 63.6
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.0e-27 125.6 88 64.8
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.3e-26 122.1 88 63.6
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 8.2e-25 117.5 78 70.5
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 1.8e-24 116.3 88 62.5
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.9e-22 109.0 77 63.6
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 2.7e-20 102.4 50 94.0
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 7.4e-18 94.4 48 87.5
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 6.3e-17 91.3 48 85.4
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 3.4e-15 85.5 91 46.2
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 9.4e-13 77.4 51 70.6
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.1e-12 74.7 51 66.7
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 2.6e-10 69.3 38 78.9
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.3e-09 67.0 65 46.2
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 1.2e-07 60.5 32 84.4
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 2.6e-07 59.3 33 78.8
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.0e-06 57.4 32 81.2
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 1.3e-06 57.0 56 41.1
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 2.9e-06 55.8 40 62.5


User provided reference genes

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