Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G416.54 Capsicum annuum HOM05D000812 ORTHO05D000672 3.5e-217 758.1 399 100.0
CAN.G416.56 Capsicum annuum HOM05D000812 ORTHO05D000672 5.0e-155 551.6 333 84.4
PGSC0003DMG400004959 Solanum tuberosum HOM05D000812 ORTHO05D000672 6.0e-68 262.3 319 48.9
Nitab4.5_0002415g0050 Nicotiana tabacum HOM05D000812 ORTHO05D000672 2.1e-60 237.3 345 44.9
Nitab4.5_0001614g0020 Nicotiana tabacum HOM05D000812 ORTHO05D000672 1.8e-59 234.2 345 44.3
Sopen04g030730 Solanum pennellii HOM05D000812 ORTHO05D000672 3.1e-56 223.4 347 42.4
Sopen04g030720 Solanum pennellii HOM05D000812 ORTHO05D000672 5.5e-45 186.0 251 46.2
PGSC0003DMG400004960 Solanum tuberosum HOM05D000812 ORTHO05D000672 7.9e-44 182.2 251 45.4
Peaxi162Scf00628g00064 Petunia axillaris HOM05D000812 ORTHO05D000672 2.3e-43 180.6 360 34.7
Hma1.2p1_1068F.1_g254030 Hydrangea macrophylla HOM05D000812 ORTHO05D000672 1.7e-38 164.5 253 39.5
Oeu059133.1 Olea europaea HOM05D000812 ORTHO05D000672 2.6e-34 150.6 269 35.7
Dinv44910 Davidia involucrata HOM05D000812 ORTHO05D000672 4.4e-34 149.8 280 35.0
Actinidia10249 Actinidia chinensis HOM05D000812 ORTHO05D000672 5.3e-32 142.9 248 33.5
vmacro21385 Vaccinium macrocarpon HOM05D000812 ORTHO05D000672 3.5e-31 140.2 293 33.1
Migut.N02819 Erythranthe guttata HOM05D000812 ORTHO05D000672 1.0e-30 138.7 261 35.6
Lj4A79T58 Lonicera japonica HOM05D000812 ORTHO05D000672 1.0e-30 138.7 263 33.5
SGA_v2.0_scaffold152G36877 Striga asiatica HOM05D000812 ORTHO05D000672 8.5e-30 135.6 258 34.1
Rhsim06G0067200 Rhododendron simsii HOM05D000812 ORTHO05D000672 7.2e-29 132.5 248 35.1
SalBow2G1710 Salvia bowleyana HOM05D000812 ORTHO05D000672 9.4e-29 132.1 260 34.2
CSS0038046 Camellia sinensis var. sinensis HOM05D000812 ORTHO05D000672 2.1e-28 131.0 298 31.5
ClCG08G011980 Citrullus lanatus HOM05D000812 ORTHO05D000672 6.1e-28 129.4 247 35.2
PSO210G4064 Papaver somniferum HOM05D000812 ORTHO05D000672 1.5e-26 124.8 247 32.8
CiPaw.16G102500 Carya illinoinensis HOM05D000812 ORTHO05D000672 2.0e-26 124.4 247 34.0
PSO447G0379 Papaver somniferum HOM05D000812 ORTHO05D000672 2.0e-26 124.4 254 31.1
Eucgr.F00472 Eucalyptus grandis HOM05D000812 ORTHO05D000672 1.7e-25 121.3 253 34.4
TAR625G1429 Trochodendron aralioides HOM05D000812 ORTHO05D000672 2.8e-25 120.6 247 33.6
Manes.18G053100 Manihot esculenta HOM05D000812 ORTHO05D000672 4.8e-25 119.8 249 33.3
Potri.002G112300 Populus trichocarpa HOM05D000812 ORTHO05D000672 4.8e-25 119.8 255 32.9
Atru.chr13.912 Acer truncatum HOM05D000812 ORTHO05D000672 1.1e-24 118.6 251 35.1
Oeu007814.1 Olea europaea HOM05D000812 ORTHO05D000672 1.1e-24 118.6 247 32.0
Sabra02G0088600 Salix brachista HOM05D000812 ORTHO05D000672 1.1e-24 118.6 251 33.1
QL12p040597 Quercus lobata HOM05D000812 ORTHO05D000672 1.8e-24 117.9 314 30.9
TAR625G0704 Trochodendron aralioides HOM05D000812 ORTHO05D000672 3.1e-24 117.1 247 33.6
Haze_19022 Corylus avellana HOM05D000812 ORTHO05D000672 4.1e-24 116.7 245 33.5
MELO3C011118.2 Cucumis melo HOM05D000812 ORTHO05D000672 4.1e-24 116.7 261 34.9
CsaV3_2G030570 Cucumis sativus L. HOM05D000812 ORTHO05D000672 2.7e-23 114.0 255 33.3
Nn6g32051 Nelumbo nucifera HOM05D000812 ORTHO05D000672 5.9e-23 112.8 249 30.9
MBI16_g26735_MAGBIO Magnolia biondii HOM05D000812 ORTHO05D000672 1.5e-21 108.2 249 30.1
PGR083G2401 Punica granatum HOM05D000812 ORTHO05D000672 7.2e-21 105.9 297 32.3
Sed0022028 Sechium edule HOM05D000812 ORTHO05D000672 9.4e-21 105.5 274 30.7
Duzib116G0392 Durio zibethinus HOM05D000812 ORTHO05D000672 3.6e-20 103.6 250 31.6
Sc02g0008320 Simmondsia chinensis HOM05D000812 ORTHO05D000672 3.6e-20 103.6 249 29.7
Hund05248 Selenicereus undatus HOM05D000812 ORTHO05D000672 2.0e-18 97.8 294 26.9
Duzib116G0943 Durio zibethinus HOM05D000812 ORTHO05D000672 4.4e-18 96.7 254 31.1
Duzib041G0205 Durio zibethinus HOM05D000812 ORTHO05D000672 5.7e-18 96.3 280 28.9
Cc10_g07950 Coffea canephora HOM05D000812 ORTHO05D000672 6.3e-17 92.8 201 34.8
HPP92_024956 Vanilla planifolia HOM05D000812 ORTHO05D000672 2.4e-16 90.9 236 27.5
Gohir.A05G214300 Gossypium hirsutum HOM05D000812 ORTHO05D000672 9.1e-16 89.0 254 28.3
Gohir.D05G217500 Gossypium hirsutum HOM05D000812 ORTHO05D000672 1.3e-14 85.1 254 28.3
Gorai.009G224400 Gossypium raimondii HOM05D000812 ORTHO05D000672 1.3e-14 85.1 254 28.3
CANSAT25G0250 Cannabis sativa HOM05D000812 ORTHO05D000672 1.1e-13 82.0 253 29.6
EL10Ac1g02322 Beta vulgaris HOM05D000812 ORTHO05D000672 6.1e-12 76.3 282 25.9
CDE05G0589 Ceratophyllum demersum HOM05D000812 ORTHO05D000672 1.4e-11 75.1 280 22.5
Medtr7g011550 Medicago truncatula HOM05D000812 ORTHO05D000672 1.4e-11 75.1 295 24.4
ATR0767G263 Amborella trichopoda HOM05D000812 ORTHO05D000672 5.2e-11 73.2 91 40.7
PGSC0003DMG400042652 Solanum tuberosum HOM05D000812 ORTHO05D000672 5.2e-11 73.2 143 37.1
DCAR_020039 Daucus carota HOM05D000812 ORTHO05D000672 3.4e-10 70.5 138 33.3
Lalb_Chr09g0325491 Lupinus albus HOM05D000812 ORTHO05D000672 5.7e-10 69.7 98 32.7
MBI04_g07012_MAGBIO Magnolia biondii HOM05D000812 ORTHO05D000672 5.7e-10 69.7 155 31.6
Solyc06g066330.3 Solanum lycopersicum HOM05D000812 ORTHO05D000672 7.5e-10 69.3 114 34.2
Zm00001eb009570 Zea mays HOM05D000812 ORTHO05D000672 7.5e-10 69.3 244 26.6
PGSC0003DMG401016766 Solanum tuberosum HOM05D000812 ORTHO05D000672 1.7e-09 68.2 115 33.0
Nitab4.5_0001632g0040 Nicotiana tabacum HOM05D000812 ORTHO05D000672 2.2e-09 67.8 109 31.2
Nitab4.5_0002190g0010 Nicotiana tabacum HOM05D000812 ORTHO05D000672 2.2e-09 67.8 271 26.9
Peaxi162Scf00185g00108 Petunia axillaris HOM05D000812 ORTHO05D000672 2.2e-09 67.8 276 23.2
Lalb_Chr16g0381101 Lupinus albus HOM05D000812 ORTHO05D000672 3.7e-09 67.0 133 30.8
Ca_25186_v3 Cicer arietinum L. HOM05D000812 ORTHO05D000672 4.9e-09 66.6 91 35.2
Sopen06g021690 Solanum pennellii HOM05D000812 ORTHO05D000672 4.9e-09 66.6 266 22.2
Medtr1g112330 Medicago truncatula HOM05D000812 ORTHO05D000672 6.3e-09 66.2 103 33.0
Solyc08g076420.3 Solanum lycopersicum HOM05D000812 ORTHO05D000672 6.3e-09 66.2 115 31.3
Rhsim07G0131700 Rhododendron simsii HOM05D000812 ORTHO05D000672 8.3e-09 65.9 106 32.1
SGA_v2.0_scaffold36G14296 Striga asiatica HOM05D000812 ORTHO05D000672 8.3e-09 65.9 267 24.7
Zm00001eb194830 Zea mays HOM05D000812 ORTHO05D000672 8.3e-09 65.9 265 23.8
CSS0031991 Camellia sinensis var. sinensis HOM05D000812 ORTHO05D000672 1.4e-08 65.1 98 34.7
VMungo1215G2145 Vigna mungo HOM05D000812 ORTHO05D000672 1.4e-08 65.1 96 28.1
CAN.G726.21 Capsicum annuum HOM05D000812 ORTHO05D000672 1.8e-08 64.7 265 24.9
Nitab4.5_0000556g0260 Nicotiana tabacum HOM05D000812 ORTHO05D000672 1.8e-08 64.7 85 30.6
VMungo1215G0290 Vigna mungo HOM05D000812 ORTHO05D000672 1.8e-08 64.7 96 31.2
Zm00001eb210510 Zea mays HOM05D000812 ORTHO05D000672 1.8e-08 64.7 89 36.0
Psat2g083680 Pisum sativum HOM05D000812 ORTHO05D000672 2.4e-08 64.3 98 32.7
TPR.G19439 Trifolium pratense HOM05D000812 ORTHO05D000672 2.4e-08 64.3 136 31.6
ATR0829G078 Amborella trichopoda HOM05D000812 ORTHO05D000672 4.1e-08 63.5 96 31.2
vmacro14198 Vaccinium macrocarpon HOM05D000812 ORTHO05D000672 4.1e-08 63.5 90 35.6
Cfa012518 Carpinus fangiana HOM05D000812 ORTHO05D000672 5.4e-08 63.2 106 30.2
Nitab4.5_0003416g0010 Nicotiana tabacum HOM05D000812 ORTHO05D000672 5.4e-08 63.2 271 26.9
Phvul.002G137600 Phaseolus vulgaris HOM05D000812 ORTHO05D000672 5.4e-08 63.2 133 25.6
SEGI_40732 Sequoiadendron giganteum HOM05D000812 ORTHO05D000672 5.4e-08 63.2 138 29.7
Cfa012520 Carpinus fangiana HOM05D000812 ORTHO05D000672 7.0e-08 62.8 242 26.4
CiPaw.11G098300 Carya illinoinensis HOM05D000812 ORTHO05D000672 7.0e-08 62.8 90 31.1
FAN04G2405 Fragaria x ananassa HOM05D000812 ORTHO05D000672 7.0e-08 62.8 90 32.2
FAN04G2983 Fragaria x ananassa HOM05D000812 ORTHO05D000672 9.2e-08 62.4 90 32.2
FAN08G0340 Fragaria x ananassa HOM05D000812 ORTHO05D000672 9.2e-08 62.4 90 32.2
Medtr5g032190 Medicago truncatula HOM05D000812 ORTHO05D000672 9.2e-08 62.4 91 30.8
PSO782G0693 Papaver somniferum HOM05D000812 ORTHO05D000672 9.2e-08 62.4 96 31.2
Lj8A309G35 Lonicera japonica HOM05D000812 ORTHO05D000672 1.2e-07 62.0 261 21.8
Sc09g0008190 Simmondsia chinensis HOM05D000812 ORTHO05D000672 1.2e-07 62.0 260 23.1
FvH4_5g23020 Fragaria vesca HOM05D000812 ORTHO05D000672 1.6e-07 61.6 90 32.2
FAN13G2070 Fragaria x ananassa HOM05D000812 ORTHO05D000672 1.6e-07 61.6 90 32.2
FAN18G3293 Fragaria x ananassa HOM05D000812 ORTHO05D000672 1.6e-07 61.6 90 32.2
FAN18G4384 Fragaria x ananassa HOM05D000812 ORTHO05D000672 1.6e-07 61.6 90 32.2
Sopen08g025000 Solanum pennellii HOM05D000812 ORTHO05D000672 1.6e-07 61.6 267 23.2
MELO3C003437.2 Cucumis melo HOM05D000812 ORTHO05D000672 2.0e-07 61.2 112 28.6
Gohir.D08G174700 Gossypium hirsutum HOM05D000812 ORTHO05D000672 2.0e-07 61.2 90 33.3
Gorai.004G182400 Gossypium raimondii HOM05D000812 ORTHO05D000672 2.0e-07 61.2 90 33.3
Lj4g0003508 Lotus japonicus HOM05D000812 ORTHO05D000672 2.0e-07 61.2 120 27.5
Phvul.002G137500 Phaseolus vulgaris HOM05D000812 ORTHO05D000672 2.0e-07 61.2 311 23.2
DCAR_004272 Daucus carota HOM05D000812 ORTHO05D000672 2.7e-07 60.8 84 33.3
FAN13G1341 Fragaria x ananassa HOM05D000812 ORTHO05D000672 2.7e-07 60.8 90 31.1
Lj2g0005786 Lotus japonicus HOM05D000812 ORTHO05D000672 2.7e-07 60.8 84 32.1
MD02G1259200 Malus domestica HOM05D000812 ORTHO05D000672 2.7e-07 60.8 301 22.6
Nitab4.5_0000109g0020 Nicotiana tabacum HOM05D000812 ORTHO05D000672 2.7e-07 60.8 262 22.5
PSO063G2255 Papaver somniferum HOM05D000812 ORTHO05D000672 2.7e-07 60.8 96 30.2
PGSC0003DMG400014804 Solanum tuberosum HOM05D000812 ORTHO05D000672 2.7e-07 60.8 264 23.9
Lj2A231T46 Lonicera japonica HOM05D000812 ORTHO05D000672 3.5e-07 60.5 83 33.7
ClCG09G011650 Citrullus lanatus HOM05D000812 ORTHO05D000672 4.5e-07 60.1 112 28.6
FvH4_5g23040 Fragaria vesca HOM05D000812 ORTHO05D000672 4.5e-07 60.1 91 30.8
Lj8A310G25 Lonicera japonica HOM05D000812 ORTHO05D000672 4.5e-07 60.1 252 23.4
Atru.chr6.1521 Acer truncatum HOM05D000812 ORTHO05D000672 5.9e-07 59.7 90 31.1
Lj4g0021393 Lotus japonicus HOM05D000812 ORTHO05D000672 5.9e-07 59.7 120 28.3
Lj4g0023939 Lotus japonicus HOM05D000812 ORTHO05D000672 7.7e-07 59.3 117 28.2
Actinidia14781 Actinidia chinensis HOM05D000812 ORTHO05D000672 1.0e-06 58.9 84 33.3
FAN18G1679 Fragaria x ananassa HOM05D000812 ORTHO05D000672 1.0e-06 58.9 91 30.8
Haze_08144 Corylus avellana HOM05D000812 ORTHO05D000672 1.3e-06 58.5 89 29.2
CAN.G137.9 Capsicum annuum HOM05D000812 ORTHO05D000672 1.7e-06 58.2 155 25.2
Lj2g0027449 Lotus japonicus HOM05D000812 ORTHO05D000672 1.7e-06 58.2 153 29.4
QL12p001583 Quercus lobata HOM05D000812 ORTHO05D000672 1.7e-06 58.2 276 22.8
TPR.G29299 Trifolium pratense HOM05D000812 ORTHO05D000672 1.7e-06 58.2 144 27.8
arahy.Tifrunner.gnm1.ann1.FGQF31 Arachis hypogaea HOM05D000812 ORTHO05D000672 2.3e-06 57.8 132 26.5
arahy.Tifrunner.gnm1.ann1.HIE0E0 Arachis hypogaea HOM05D000812 ORTHO05D000672 2.3e-06 57.8 132 26.5
AUR62020715 Chenopodium quinoa HOM05D000812 ORTHO05D000672 2.3e-06 57.8 84 32.1
AUR62028007 Chenopodium quinoa HOM05D000812 ORTHO05D000672 2.3e-06 57.8 84 32.1
Glyma.01G015000 Glycine max HOM05D000812 ORTHO05D000672 2.3e-06 57.8 308 22.7
PGR031G1634 Punica granatum HOM05D000812 ORTHO05D000672 2.3e-06 57.8 147 27.2
Aqoxy1G03562 Aquilegia oxysepala HOM05D000812 ORTHO05D000672 2.9e-06 57.4 164 29.3
Aqoxy3G02185 Aquilegia oxysepala HOM05D000812 ORTHO05D000672 2.9e-06 57.4 302 23.2
CsaV3_3G048860 Cucumis sativus L. HOM05D000812 ORTHO05D000672 2.9e-06 57.4 129 26.4
Peaxi162Scf00045g00222 Petunia axillaris HOM05D000812 ORTHO05D000672 2.9e-06 57.4 297 22.2
Ca_04535_v3 Cicer arietinum L. HOM05D000812 ORTHO05D000672 3.8e-06 57.0 138 27.5
Haze_08143 Corylus avellana HOM05D000812 ORTHO05D000672 3.8e-06 57.0 274 22.3
Glyma.01G015200 Glycine max HOM05D000812 ORTHO05D000672 3.8e-06 57.0 300 22.7
Sopen08g001290 Solanum pennellii HOM05D000812 ORTHO05D000672 3.8e-06 57.0 151 24.5
Lalb_Chr05g0216311 Lupinus albus HOM05D000812 ORTHO05D000672 5.0e-06 56.6 143 27.3
Solyc08g005270.3 Solanum lycopersicum HOM05D000812 ORTHO05D000672 5.0e-06 56.6 151 23.8
Gohir.A08G153800 Gossypium hirsutum HOM05D000812 ORTHO05D000672 6.6e-06 56.2 269 21.9
Lj1g0010161 Lotus japonicus HOM05D000812 ORTHO05D000672 6.6e-06 56.2 237 23.2
Lj5g0002999 Lotus japonicus HOM05D000812 ORTHO05D000672 6.6e-06 56.2 155 28.4
Potri.001G137200 Populus trichocarpa HOM05D000812 ORTHO05D000672 6.6e-06 56.2 90 28.9
TWI81G0168 Tripterygium wilfordii HOM05D000812 ORTHO05D000672 8.6e-06 55.8 232 22.8
HPP92_020899 Vanilla planifolia HOM05D000812 ORTHO05D000672 8.6e-06 55.8 294 24.1


User provided reference genes

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