Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 3.4e-278 961.1 492 100.0
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 7.9e-211 737.3 411 92.0
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 3.9e-210 734.9 411 91.7
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 4.9e-205 718.0 418 88.0
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 8.4e-205 717.2 411 89.3
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 5.0e-197 691.4 411 87.1
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 1.1e-180 637.1 391 88.7
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 9.4e-180 634.0 391 87.0
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 1.1e-177 627.1 414 76.3
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 1.5e-177 626.7 414 75.4
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 3.1e-175 619.0 414 77.5
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 9.1e-175 617.5 415 74.9
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 1.2e-174 617.1 415 75.7
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 2.0e-174 616.3 415 75.4
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 9.4e-172 607.4 416 74.0
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 1.6e-171 606.7 415 73.5
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 2.1e-171 606.3 414 73.2
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 3.3e-169 599.0 415 72.8
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 1.3e-168 597.0 424 72.4
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 3.7e-168 595.5 415 73.3
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 6.3e-168 594.7 415 72.3
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 1.8e-167 593.2 417 72.2
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 2.4e-167 592.8 415 71.3
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.4e-167 592.8 415 73.7
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 1.2e-166 590.5 415 73.0
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 1.6e-166 590.1 416 72.8
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 2.0e-166 589.7 415 72.3
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 2.7e-166 589.3 415 72.3
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 2.7e-166 589.3 430 70.5
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 3.5e-166 589.0 413 73.1
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 4.5e-166 588.6 415 72.0
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 4.5e-166 588.6 416 71.6
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 3.8e-165 585.5 415 70.8
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 8.5e-165 584.3 417 71.7
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 1.9e-164 583.2 416 71.9
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 1.9e-164 583.2 415 73.3
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 2.1e-163 579.7 413 71.2
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 1.8e-162 576.6 413 70.5
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 6.8e-162 574.7 424 69.8
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 1.5e-161 573.5 412 69.7
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 1.5e-161 573.5 411 70.3
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 5.7e-161 571.6 413 70.7
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 1.3e-160 570.5 415 71.3
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 3.7e-160 568.9 416 70.0
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 4.8e-160 568.5 415 68.2
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 6.3e-160 568.2 416 70.2
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 1.1e-159 567.4 452 64.8
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 1.4e-159 567.0 412 69.4
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 9.1e-159 564.3 415 70.6
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 2.0e-158 563.1 412 68.2
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.5e-158 562.4 422 69.9
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 4.5e-158 562.0 415 69.9
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.3e-157 560.5 422 70.1
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 1.9e-156 556.6 415 68.0
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 3.3e-156 555.8 421 67.7
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 5.5e-156 555.1 428 68.2
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 7.2e-156 554.7 420 66.7
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 1.2e-155 553.9 415 68.9
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 1.6e-155 553.5 415 68.0
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 2.8e-155 552.7 421 67.0
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 8.9e-154 547.7 415 68.0
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 1.5e-153 547.0 419 67.1
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 2.0e-153 546.6 404 67.8
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 2.6e-153 546.2 421 65.8
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 5.7e-153 545.0 421 66.3
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 1.3e-152 543.9 501 60.5
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 2.2e-152 543.1 417 67.1
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 2.2e-152 543.1 415 67.7
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 4.1e-151 538.9 414 66.2
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 5.4e-151 538.5 399 68.2
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 5.4e-151 538.5 428 67.1
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 2.0e-150 536.6 451 61.4
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 2.0e-150 536.6 415 66.3
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 2.7e-150 536.2 413 65.6
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 4.5e-150 535.4 415 66.5
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 3.3e-148 529.3 414 64.7
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 5.2e-146 521.9 375 71.2
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 4.4e-145 518.8 415 64.3
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 3.2e-143 512.7 395 66.3
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 6.0e-142 508.4 412 62.1
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 4.3e-140 502.3 414 63.0
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 1.1e-138 497.7 431 63.8
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 1.4e-138 497.3 382 67.5
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.4e-138 497.3 448 62.1
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 6.4e-136 488.4 510 56.1
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 8.3e-136 488.0 422 63.5
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 7.8e-134 481.5 420 60.0
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 2.3e-133 479.9 423 59.6
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 3.9e-133 479.2 420 60.0
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 3.9e-133 479.2 420 60.0
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 2.6e-129 466.5 422 59.5
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.9e-127 460.3 419 56.1
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 7.8e-126 454.9 421 54.6
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 6.8e-122 441.8 418 55.7
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 5.8e-121 438.7 416 58.4
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.1e-118 430.3 419 53.5
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.0e-117 427.9 411 54.0
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.4e-113 412.9 418 52.9
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 1.3e-112 411.0 299 71.2
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 1.7e-112 410.6 299 71.2
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 1.1e-106 391.3 293 67.9
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.2e-97 361.3 362 51.4
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.4e-95 354.4 231 78.8
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 1.0e-88 331.6 165 97.6
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 3.0e-85 320.1 341 51.0
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 6.3e-83 312.4 224 71.9
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 2.5e-79 300.4 239 68.2
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 5.0e-56 223.0 166 65.7
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 8.5e-56 222.2 172 64.5
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 3.0e-53 213.8 349 38.1
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.5e-47 194.9 211 50.2
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 5.0e-40 169.9 180 48.3
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 4.2e-39 166.8 117 74.4
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 6.8e-37 159.5 266 39.1
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 5.4e-34 149.8 106 73.6
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.3e-32 145.2 157 51.6
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 1.7e-32 144.8 292 32.5
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.9e-27 127.5 422 28.0
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 1.0e-24 119.0 114 59.6
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-24 117.5 352 29.0
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 3.3e-23 114.0 332 29.5
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 4.7e-22 110.2 388 26.3
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 1.4e-21 108.6 249 29.3
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 2.0e-20 104.8 368 27.7
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 2.0e-20 104.8 73 74.0
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.0e-20 104.8 234 34.2
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.9e-19 100.9 90 54.4
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.9e-18 98.2 284 29.2
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 4.1e-18 97.1 233 28.3
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 3.5e-17 94.0 264 26.1
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.6e-14 84.0 227 28.6
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.0e-12 78.2 67 58.2
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 8.4e-11 72.8 130 34.6
PGSC0003DMG400019390 Solanum tuberosum HOM05D000185 ORTHO05D000105 2.8e-06 57.8 41 61.0
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 4.7e-06 57.0 73 47.9


User provided reference genes

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