Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G399.7 Capsicum annuum HOM05D006744 ORTHO05D008730 2.1e-36 155.2 80 100.0
CAN.G141.11 Capsicum annuum HOM05D006744 ORTHO05D008730 7.4e-26 120.2 74 85.1
Solyc06g005710.3 Solanum lycopersicum HOM05D006744 ORTHO05D008730 1.3e-25 119.4 74 83.8
Sopen06g001690 Solanum pennellii HOM05D006744 ORTHO05D008730 1.3e-25 119.4 74 83.8
PGSC0003DMG400002146 Solanum tuberosum HOM05D006744 ORTHO05D008730 1.3e-25 119.4 74 83.8
CAN.G624.26 Capsicum annuum HOM05D006744 ORTHO05D008730 1.8e-24 115.5 74 81.1
CAN.G84.41 Capsicum annuum HOM05D002560 ORTHO05D000293 2.6e-23 111.7 74 79.7
Peaxi162Scf00265g00210 Petunia axillaris HOM05D006744 ORTHO05D008730 1.3e-22 109.4 72 77.8
CARHR154880 Cardamine hirsuta HOM05D006744 ORTHO05D008730 5.7e-18 94.0 74 64.9
Sed0004789 Sechium edule HOM05D006744 ORTHO05D008730 5.7e-18 94.0 72 68.1
DCAR_005941 Daucus carota HOM05D006744 ORTHO05D008730 7.4e-18 93.6 72 69.4
Thhalv10002484m.g Eutrema salsugineum HOM05D006744 ORTHO05D008730 7.4e-18 93.6 74 64.9
QL01p029218 Quercus lobata HOM05D006744 ORTHO05D008730 9.7e-18 93.2 72 66.7
GSVIVG01024905001 Vitis vinifera HOM05D006744 ORTHO05D008730 9.7e-18 93.2 74 68.9
MD03G1086000 Malus domestica HOM05D006744 ORTHO05D008730 1.7e-17 92.4 72 65.3
Aa31LG4G15710 Aethionema arabicum HOM05D006744 ORTHO05D008730 2.2e-17 92.0 74 63.5
MSTRG.21220 Avicennia marina HOM05D006744 ORTHO05D008730 2.2e-17 92.0 72 69.4
Oeu004177.1 Olea europaea HOM05D006744 ORTHO05D008730 2.2e-17 92.0 72 68.1
vmacro03026 Vaccinium macrocarpon HOM05D006744 ORTHO05D008730 2.2e-17 92.0 72 66.7
Potri.001G244800 Populus trichocarpa HOM05D006744 ORTHO05D008730 2.8e-17 91.7 72 65.3
A01p26030 Brassica napus HOM05D006744 ORTHO05D008730 3.7e-17 91.3 74 62.2
BolC1t03248H Brassica oleracea HOM05D006744 ORTHO05D008730 3.7e-17 91.3 74 62.2
BraA01t02520Z Brassica rapa HOM05D006744 ORTHO05D008730 3.7e-17 91.3 74 62.2
Ciclev10030042m.g Citrus clementina HOM05D006744 ORTHO05D008730 3.7e-17 91.3 74 63.5
Sp5g14930 Schrenkiella parvula HOM05D006744 ORTHO05D008730 3.7e-17 91.3 74 62.2
Actinidia08543 Actinidia chinensis HOM05D006744 ORTHO05D008730 4.8e-17 90.9 74 63.5
AT3G46780 Arabidopsis thaliana HOM05D006744 ORTHO05D008730 4.8e-17 90.9 74 62.2
BcaB05g23514 Brassica carinata HOM05D006744 ORTHO05D008730 4.8e-17 90.9 74 62.2
Eucgr.B02306 Eucalyptus grandis HOM05D006744 ORTHO05D008730 4.8e-17 90.9 72 65.3
Migut.D00876 Erythranthe guttata HOM05D006744 ORTHO05D008730 6.3e-17 90.5 73 64.4
VMungo1127G1123 Vigna mungo HOM05D006744 ORTHO05D008730 6.3e-17 90.5 75 65.3
Carub.0005s1303 Capsella rubella HOM05D006744 ORTHO05D008730 8.2e-17 90.1 74 62.2
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 1.1e-16 89.7 66 71.2
AL5G25790 Arabidopsis lyrata HOM05D006744 ORTHO05D008730 1.4e-16 89.4 72 62.5
Glyma.11G135900 Glycine max HOM05D006744 ORTHO05D008730 1.4e-16 89.4 75 64.0
CANSAT54G0933 Cannabis sativa HOM05D006744 ORTHO05D008730 1.8e-16 89.0 72 65.3
Lalb_Chr01g0003461 Lupinus albus HOM05D006744 ORTHO05D008730 1.8e-16 89.0 75 65.3
THA.LOC104810751 Tarenaya hassleriana HOM05D006744 ORTHO05D008730 2.4e-16 88.6 72 63.9
arahy.Tifrunner.gnm1.ann1.5LUI7K Arachis hypogaea HOM05D006744 ORTHO05D008730 4.1e-16 87.8 78 62.8
arahy.Tifrunner.gnm1.ann1.6RB142 Arachis hypogaea HOM05D006744 ORTHO05D008730 4.1e-16 87.8 78 62.8
BcaC09g49774 Brassica carinata HOM05D006744 ORTHO05D008730 4.1e-16 87.8 74 60.8
C01p33110 Brassica napus HOM05D006744 ORTHO05D008730 4.1e-16 87.8 74 60.8
Lj3g0003575 Lotus japonicus HOM05D006744 ORTHO05D008730 4.1e-16 87.8 74 60.8
MELO3C025888.2 Cucumis melo HOM05D006744 ORTHO05D008730 5.3e-16 87.4 72 65.3
Potri.009G037000 Populus trichocarpa HOM05D006744 ORTHO05D008730 5.3e-16 87.4 74 63.5
CsaV3_6G016590 Cucumis sativus L. HOM05D006744 ORTHO05D008730 7.0e-16 87.0 72 65.3
CsaV3_7G010020 Cucumis sativus L. HOM05D006744 ORTHO05D008730 7.0e-16 87.0 72 65.3
Gorai.001G112600 Gossypium raimondii HOM05D006744 ORTHO05D008730 7.0e-16 87.0 72 61.1
SGA_v2.0_scaffold20G09292 Striga asiatica HOM05D006744 ORTHO05D008730 7.0e-16 87.0 73 64.4
Nn2g11215 Nelumbo nucifera HOM05D006744 ORTHO05D008730 9.1e-16 86.7 72 62.5
Atru.chr3.3995 Acer truncatum HOM05D006744 ORTHO05D008730 1.2e-15 86.3 74 59.5
Gohir.A07G100500 Gossypium hirsutum HOM05D006744 ORTHO05D008730 1.2e-15 86.3 72 61.1
Lj2C1069T8 Lonicera japonica HOM05D006744 ORTHO05D008730 1.2e-15 86.3 76 64.5
ECA248G1499 Erigeron canadensis HOM05D006744 ORTHO05D008730 1.6e-15 85.9 76 64.5
Prupe.6G070200 Prunus persica HOM05D006744 ORTHO05D008730 1.6e-15 85.9 72 62.5
TAR636G2563 Trochodendron aralioides HOM05D006744 ORTHO05D008730 2.0e-15 85.5 74 60.8
TAR636G3279 Trochodendron aralioides HOM05D006744 ORTHO05D008730 2.0e-15 85.5 74 60.8
Phvul.011G061600 Phaseolus vulgaris HOM05D006744 ORTHO05D008730 2.6e-15 85.1 75 62.7
Actinidia01965 Actinidia chinensis HOM05D006744 ORTHO05D008730 3.5e-15 84.7 69 65.2
CiPaw.13G089100 Carya illinoinensis HOM05D006744 ORTHO05D008730 3.5e-15 84.7 72 61.1
Glyma.12G059600 Glycine max HOM05D006744 ORTHO05D008730 3.5e-15 84.7 73 63.0
PSO513G0104 Papaver somniferum HOM05D006744 ORTHO05D008730 3.5e-15 84.7 74 59.5
TWI79G0292 Tripterygium wilfordii HOM05D006744 ORTHO05D008730 3.5e-15 84.7 74 60.8
DCAR_007429 Daucus carota HOM05D006744 ORTHO05D008730 4.5e-15 84.3 72 63.9
Gohir.D07G104700 Gossypium hirsutum HOM05D006744 ORTHO05D008730 4.5e-15 84.3 72 59.7
Psat7g210440 Pisum sativum HOM05D006744 ORTHO05D008730 5.9e-15 84.0 76 61.8
ClCG02G019880 Citrullus lanatus HOM05D006744 ORTHO05D008730 7.7e-15 83.6 72 63.9
COL.COLO4_18579 Corchorus olitorius HOM05D006744 ORTHO05D008730 7.7e-15 83.6 72 59.7
CDE09G0068 Ceratophyllum demersum HOM05D006744 ORTHO05D008730 1.7e-14 82.4 72 56.9
Ca_20615_v3 Cicer arietinum L. HOM05D006744 ORTHO05D008730 1.7e-14 82.4 76 61.8
PGR102G0876 Punica granatum HOM05D006744 ORTHO05D008730 1.7e-14 82.4 74 60.8
TPR.G23627 Trifolium pratense HOM05D006744 ORTHO05D008730 1.7e-14 82.4 76 60.5
ATR0559G062 Amborella trichopoda HOM05D006744 ORTHO05D008730 2.2e-14 82.0 66 60.6
Haze_24171 Corylus avellana HOM05D006744 ORTHO05D008730 2.2e-14 82.0 72 63.9
Haze_24176 Corylus avellana HOM05D006744 ORTHO05D008730 2.2e-14 82.0 72 63.9
HanXRQChr01g0010651 Helianthus annuus HOM05D006744 ORTHO05D008730 2.2e-14 82.0 74 63.5
Thecc.09G315400 Theobroma cacao HOM05D006744 ORTHO05D008730 2.2e-14 82.0 72 56.9
Actinidia33767 Actinidia chinensis HOM05D006744 ORTHO05D008730 2.9e-14 81.6 74 59.5
CSS0019879 Camellia sinensis var. sinensis HOM05D006744 ORTHO05D008730 3.8e-14 81.3 73 63.0
CSS0020219 Camellia sinensis var. sinensis HOM05D006744 ORTHO05D008730 3.8e-14 81.3 73 63.0
Manes.02G128600 Manihot esculenta HOM05D006744 ORTHO05D008730 3.8e-14 81.3 72 63.9
Medtr4g064750 Medicago truncatula HOM05D006744 ORTHO05D008730 5.0e-14 80.9 77 61.0
CDE02G4503 Ceratophyllum demersum HOM05D006744 ORTHO05D008730 6.5e-14 80.5 72 56.9
Duzib168G0134 Durio zibethinus HOM05D006744 ORTHO05D008730 6.5e-14 80.5 72 55.6
Dinv34288 Davidia involucrata HOM05D006744 ORTHO05D008730 8.5e-14 80.1 74 64.9
FvH4_3g36950 Fragaria vesca HOM05D006744 ORTHO05D008730 8.5e-14 80.1 72 61.1
Lsat_1_v5_gn_5_169660 Lactuca sativa HOM05D006744 ORTHO05D008730 1.1e-13 79.7 75 62.7
Cc01_g13360 Coffea canephora HOM05D006744 ORTHO05D008730 1.9e-13 79.0 72 61.1
MBI14_g11597_MAGBIO Magnolia biondii HOM05D006744 ORTHO05D008730 5.5e-13 77.4 74 54.1
Cpa.g.sc81.95 Carica papaya HOM05D006744 ORTHO05D008730 7.2e-13 77.0 62 64.5
EL10Ac7g16071 Beta vulgaris HOM05D006744 ORTHO05D008730 1.6e-12 75.9 72 59.7
Ah.08g220080 Amaranthus hybridus HOM05D006744 ORTHO05D008730 2.1e-12 75.5 72 59.7
RcHm_v2.0_Chr5g0066371 Rosa chinensis HOM05D006744 ORTHO05D008730 2.1e-12 75.5 72 56.9
HanXRQChr11g0340641 Helianthus annuus HOM05D006744 ORTHO05D008730 3.6e-12 74.7 73 61.6
Os05g0291700 Oryza sativa ssp. japonica HOM05D006744 ORTHO05D008730 4.7e-12 74.3 73 56.2
AUR62020042 Chenopodium quinoa HOM05D006744 ORTHO05D008730 1.0e-11 73.2 72 59.7
Duzib170G1039 Durio zibethinus HOM05D006744 ORTHO05D008730 1.0e-11 73.2 74 51.4
unitig_746.g26716 Utricularia gibba HOM05D006744 ORTHO05D008730 1.0e-11 73.2 59 64.4
Manes.01G169200 Manihot esculenta HOM05D006744 ORTHO05D008730 5.2e-11 70.9 72 59.7
Nitab4.5_0000102g0310 Nicotiana tabacum HOM05D006744 ORTHO05D008730 8.8e-11 70.1 47 74.5
Aqoxy2G02327 Aquilegia oxysepala HOM05D006744 ORTHO05D008730 5.7e-10 67.4 72 54.2
Hund04920 Selenicereus undatus HOM05D006744 ORTHO05D008730 2.8e-09 65.1 73 54.8
Sc21g0006010 Simmondsia chinensis HOM05D006744 ORTHO05D008730 3.7e-09 64.7 72 51.4
HPP92_012610 Vanilla planifolia HOM05D006744 ORTHO05D008730 4.8e-09 64.3 72 51.4
SEGI_15287 Sequoiadendron giganteum HOM05D006744 ORTHO05D008730 1.2e-07 59.7 65 46.2
Mapoly0154s0018 Marchantia polymorpha HOM05D006744 ORTHO05D008730 2.0e-07 58.9 60 53.3
Pp3c1_14800 Physcomitrium patens HOM05D006744 ORTHO05D008730 1.3e-06 56.2 60 50.0
CBR_g39489 Chara braunii HOM05D006744 ORTHO05D008730 2.2e-06 55.5 62 45.2


User provided reference genes

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