Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G39.25 Capsicum annuum HOM05D003008 ORTHO05D003346 5.9e-85 317.4 148 100.0
Solyc02g022830.3 Solanum lycopersicum HOM05D003008 ORTHO05D003346 3.0e-65 251.9 116 99.1
Sopen02g006420 Solanum pennellii HOM05D003008 ORTHO05D003346 3.0e-65 251.9 116 99.1
Nitab4.5_0000076g0040 Nicotiana tabacum HOM05D003008 ORTHO05D003346 2.0e-64 249.2 116 97.4
QL03p057306 Quercus lobata HOM05D003008 ORTHO05D003346 1.2e-58 229.9 110 93.6
CSS0037242 Camellia sinensis var. sinensis HOM05D003008 ORTHO05D003346 2.7e-58 228.8 114 89.5
CiPaw.03G113700 Carya illinoinensis HOM05D003008 ORTHO05D003346 2.7e-58 228.8 110 90.0
Dinv08829 Davidia involucrata HOM05D003008 ORTHO05D003346 2.7e-58 228.8 109 93.6
Nn7g37799 Nelumbo nucifera HOM05D003008 ORTHO05D003346 2.7e-58 228.8 116 87.9
Thecc.06G011200 Theobroma cacao HOM05D003008 ORTHO05D003346 3.6e-58 228.4 114 90.4
Duzib235G1093 Durio zibethinus HOM05D003008 ORTHO05D003346 4.7e-58 228.0 114 89.5
TWI15G0228 Tripterygium wilfordii HOM05D003008 ORTHO05D003346 1.4e-57 226.5 114 88.6
Cc09_g07360 Coffea canephora HOM05D003008 ORTHO05D003346 5.2e-57 224.6 109 91.7
Eucgr.D01628 Eucalyptus grandis HOM05D003008 ORTHO05D003346 6.7e-57 224.2 114 87.7
Gorai.009G117100 Gossypium raimondii HOM05D003008 ORTHO05D003346 6.7e-57 224.2 114 88.6
COL.COLO4_22894 Corchorus olitorius HOM05D003008 ORTHO05D003346 8.8e-57 223.8 113 88.5
Gohir.A05G112501 Gossypium hirsutum HOM05D003008 ORTHO05D003346 8.8e-57 223.8 114 88.6
Gohir.D05G113000 Gossypium hirsutum HOM05D003008 ORTHO05D003346 8.8e-57 223.8 114 88.6
Cfa023567 Carpinus fangiana HOM05D003008 ORTHO05D003346 2.6e-56 222.2 108 90.7
Haze_13592 Corylus avellana HOM05D003008 ORTHO05D003346 2.6e-56 222.2 108 90.7
Lj2A336T37 Lonicera japonica HOM05D003008 ORTHO05D003346 7.5e-56 220.7 110 90.0
MD10G1243800 Malus domestica HOM05D003008 ORTHO05D003346 7.5e-56 220.7 114 87.7
Aqoxy1G01512 Aquilegia oxysepala HOM05D003008 ORTHO05D003346 9.7e-56 220.3 114 84.2
Rhsim13G0124600 Rhododendron simsii HOM05D003008 ORTHO05D003346 1.7e-55 219.5 108 88.0
vmacro03472 Vaccinium macrocarpon HOM05D003008 ORTHO05D003346 1.7e-55 219.5 108 88.9
Atru.chr10.699 Acer truncatum HOM05D003008 ORTHO05D003346 2.2e-55 219.2 109 89.9
MBI02_g32311_MAGBIO Magnolia biondii HOM05D003008 ORTHO05D003346 2.2e-55 219.2 113 86.7
RcHm_v2.0_Chr5g0018171 Rosa chinensis HOM05D003008 ORTHO05D003346 3.7e-55 218.4 115 84.3
SalBow8G1512 Salvia bowleyana HOM05D003008 ORTHO05D003346 6.3e-55 217.6 109 88.1
GSVIVG01008778001 Vitis vinifera HOM05D003008 ORTHO05D003346 6.3e-55 217.6 110 88.2
PGR044G1782 Punica granatum HOM05D003008 ORTHO05D003346 8.2e-55 217.2 114 83.3
Os06g0671700 Oryza sativa ssp. japonica HOM05D003008 ORTHO05D003346 1.1e-54 216.9 114 86.0
GSVIVG01021728001 Vitis vinifera HOM05D003008 ORTHO05D003346 1.8e-54 216.1 110 88.2
Migut.M01920 Erythranthe guttata HOM05D003008 ORTHO05D003346 2.4e-54 215.7 109 89.9
FvH4_3g11220 Fragaria vesca HOM05D003008 ORTHO05D003346 2.4e-54 215.7 108 87.0
Sc10g0009650 Simmondsia chinensis HOM05D003008 ORTHO05D003346 3.1e-54 215.3 108 85.2
CDE01G0377 Ceratophyllum demersum HOM05D003008 ORTHO05D003346 4.1e-54 214.9 110 87.3
Prupe.4G099700 Prunus persica HOM05D003008 ORTHO05D003346 4.1e-54 214.9 108 88.0
Ciclev10014667m.g Citrus clementina HOM05D003008 ORTHO05D003346 5.3e-54 214.5 108 88.0
FAN21G3776 Fragaria x ananassa HOM05D003008 ORTHO05D003346 5.3e-54 214.5 108 86.1
arahy.Tifrunner.gnm1.ann1.WH7KDQ Arachis hypogaea HOM05D003008 ORTHO05D003346 2.0e-53 212.6 114 82.5
Manes.14G125700 Manihot esculenta HOM05D003008 ORTHO05D003346 2.7e-53 212.2 108 89.8
Lj6g0020929 Lotus japonicus HOM05D003008 ORTHO05D003346 4.5e-53 211.5 109 86.2
Ca_25498_v3 Cicer arietinum L. HOM05D003008 ORTHO05D003346 7.7e-53 210.7 109 86.2
Glyma.15G134500 Glycine max HOM05D003008 ORTHO05D003346 7.7e-53 210.7 111 84.7
Medtr2g031620 Medicago truncatula HOM05D003008 ORTHO05D003346 7.7e-53 210.7 109 87.2
PSO675G7488 Papaver somniferum HOM05D003008 ORTHO05D003346 7.7e-53 210.7 113 85.8
Phvul.006G124400 Phaseolus vulgaris HOM05D003008 ORTHO05D003346 7.7e-53 210.7 112 83.9
Actinidia33712 Actinidia chinensis HOM05D003008 ORTHO05D003346 1.7e-52 209.5 108 85.2
Zm00001eb274090 Zea mays HOM05D003008 ORTHO05D003346 1.7e-52 209.5 107 87.9
AUR62029886 Chenopodium quinoa HOM05D003008 ORTHO05D003346 2.2e-52 209.1 108 82.4
ECA248G0148 Erigeron canadensis HOM05D003008 ORTHO05D003346 2.2e-52 209.1 108 85.2
Glyma.09G028600 Glycine max HOM05D003008 ORTHO05D003346 2.2e-52 209.1 111 84.7
Lalb_Chr18g0058241 Lupinus albus HOM05D003008 ORTHO05D003346 2.2e-52 209.1 109 86.2
PSO541G5492 Papaver somniferum HOM05D003008 ORTHO05D003346 2.2e-52 209.1 113 85.0
Lsat_1_v5_gn_1_91720 Lactuca sativa HOM05D003008 ORTHO05D003346 3.8e-52 208.4 110 84.5
Lj1C1159T8 Lonicera japonica HOM05D003008 ORTHO05D003346 5.0e-52 208.0 114 83.3
Lalb_Chr15g0088941 Lupinus albus HOM05D003008 ORTHO05D003346 5.0e-52 208.0 111 83.8
DCAR_007820 Daucus carota HOM05D003008 ORTHO05D003346 6.5e-52 207.6 107 86.0
HanXRQChr11g0340941 Helianthus annuus HOM05D003008 ORTHO05D003346 6.5e-52 207.6 109 85.3
Potri.001G461300 Populus trichocarpa HOM05D003008 ORTHO05D003346 6.5e-52 207.6 110 83.6
AUR62025821 Chenopodium quinoa HOM05D003008 ORTHO05D003346 8.5e-52 207.2 110 80.0
FAN25G1988 Fragaria x ananassa HOM05D003008 ORTHO05D003346 1.1e-51 206.8 108 83.3
Sed0021502 Sechium edule HOM05D003008 ORTHO05D003346 1.5e-51 206.5 110 82.7
Aqoxy7G01281 Aquilegia oxysepala HOM05D003008 ORTHO05D003346 2.5e-51 205.7 114 78.9
HanXRQChr01g0020641 Helianthus annuus HOM05D003008 ORTHO05D003346 2.5e-51 205.7 108 86.1
Sabra16G0313000 Salix brachista HOM05D003008 ORTHO05D003346 2.5e-51 205.7 109 83.5
VMungo0540G1323 Vigna mungo HOM05D003008 ORTHO05D003346 3.2e-51 205.3 105 87.6
ATR0763G210 Amborella trichopoda HOM05D003008 ORTHO05D003346 4.2e-51 204.9 110 82.7
SGA_v2.0_scaffold223G42877 Striga asiatica HOM05D003008 ORTHO05D003346 4.2e-51 204.9 103 87.4
THA.LOC104798583 Tarenaya hassleriana HOM05D003008 ORTHO05D003346 7.2e-51 204.1 110 83.6
MELO3C002865.2 Cucumis melo HOM05D003008 ORTHO05D003346 9.4e-51 203.8 107 83.2
Thhalv10006950m.g Eutrema salsugineum HOM05D003008 ORTHO05D003346 9.4e-51 203.8 114 80.7
Psat1g164800 Pisum sativum HOM05D003008 ORTHO05D003346 1.2e-50 203.4 109 83.5
BcaB07g32707 Brassica carinata HOM05D003008 ORTHO05D003346 1.6e-50 203.0 114 80.7
BcaC05g27092 Brassica carinata HOM05D003008 ORTHO05D003346 1.6e-50 203.0 114 80.7
A09p35720 Brassica napus HOM05D003008 ORTHO05D003346 1.6e-50 203.0 114 80.7
C05p29740 Brassica napus HOM05D003008 ORTHO05D003346 1.6e-50 203.0 114 80.7
BolC5t31702H Brassica oleracea HOM05D003008 ORTHO05D003346 1.6e-50 203.0 114 80.7
BraA09t39097Z Brassica rapa HOM05D003008 ORTHO05D003346 1.6e-50 203.0 114 80.7
Oeu060320.2 Olea europaea HOM05D003008 ORTHO05D003346 1.6e-50 203.0 103 88.3
TPR.G15179 Trifolium pratense HOM05D003008 ORTHO05D003346 2.7e-50 202.2 109 82.6
Sp1g26580 Schrenkiella parvula HOM05D003008 ORTHO05D003346 1.4e-49 199.9 114 79.8
Aa31LG6G11900 Aethionema arabicum HOM05D003008 ORTHO05D003346 2.3e-49 199.1 107 84.1
DCAR_000835 Daucus carota HOM05D003008 ORTHO05D003346 4.0e-49 198.4 99 88.9
CARHR030150 Cardamine hirsuta HOM05D003008 ORTHO05D003346 6.8e-49 197.6 107 82.2
arahy.Tifrunner.gnm1.ann1.7QV6JY Arachis hypogaea HOM05D003008 ORTHO05D003346 1.2e-48 196.8 102 86.3
arahy.Tifrunner.gnm1.ann1.447SJP Arachis hypogaea HOM05D003008 ORTHO05D003346 2.0e-48 196.1 100 87.0
EL10Ac8g19523 Beta vulgaris HOM05D003008 ORTHO05D003346 3.4e-48 195.3 104 81.7
AT1G30680 Arabidopsis thaliana HOM05D003008 ORTHO05D003346 5.7e-48 194.5 107 79.4
CsaV3_1G037560 Cucumis sativus L. HOM05D003008 ORTHO05D003346 7.5e-48 194.1 107 78.5
AL1G44740 Arabidopsis lyrata HOM05D003008 ORTHO05D003346 1.7e-47 193.0 107 79.4
HPP92_013208 Vanilla planifolia HOM05D003008 ORTHO05D003346 1.7e-47 193.0 107 83.2
AagrBONN_evm.TU.Sc2ySwM_117.1205 Anthoceros agrestis HOM05D003008 ORTHO05D003346 2.8e-47 192.2 109 78.0
Carub.0001s2896 Capsella rubella HOM05D003008 ORTHO05D003346 2.8e-47 192.2 107 81.3
SEGI_26502 Sequoiadendron giganteum HOM05D003008 ORTHO05D003346 6.3e-47 191.0 109 77.1
Ah.09g232330 Amaranthus hybridus HOM05D000070 ORTHO05D003346 8.3e-47 190.7 107 81.3
CDE02G0274 Ceratophyllum demersum HOM05D003008 ORTHO05D003346 1.1e-46 190.3 108 75.0
Mapoly0003s0305 Marchantia polymorpha HOM05D003008 ORTHO05D003346 1.4e-46 189.9 108 77.8
HPP92_005928 Vanilla planifolia HOM05D003008 ORTHO05D003346 2.4e-46 189.1 108 79.6
Pp3c12_26070 Physcomitrium patens HOM05D003008 ORTHO05D003346 9.1e-46 187.2 108 78.7
SMO364G0389 Selaginella moellendorffii HOM05D003008 ORTHO05D003346 6.5e-44 181.0 108 73.1
SEGI_40021 Sequoiadendron giganteum HOM05D003008 ORTHO05D003346 2.8e-42 175.6 114 67.5
MCO14G370 Micromonas commoda HOM05D003008 ORTHO05D003346 1.8e-38 162.9 108 68.5
CBR_g16946 Chara braunii HOM05D003008 ORTHO05D003346 4.1e-38 161.8 116 65.5
Oeu058493.2 Olea europaea HOM05D003008 ORTHO05D003346 5.9e-37 157.9 79 88.6
MD05G1265800 Malus domestica HOM05D003008 ORTHO05D003346 4.3e-35 151.8 78 85.9
SHI24823 Sapria himalayana HOM05D003008 ORTHO05D003346 4.7e-34 148.3 77 84.4
PRCOL_00000580 Prasinoderma coloniale HOM05D003008 ORTHO05D003346 6.1e-34 147.9 107 63.6
FAN16G0127 Fragaria x ananassa HOM05D003008 ORTHO05D003346 3.2e-30 135.6 68 86.8
Cre12.g514950 Chlamydomonas reinhardtii HOM05D003008 ORTHO05D003346 3.3e-27 125.6 133 47.4
CBR_g38556 Chara braunii HOM05D003008 ORTHO05D003346 4.3e-27 125.2 87 67.8
ClCG03G008470 Citrullus lanatus HOM05D003008 ORTHO05D003346 9.5e-27 124.0 93 69.9
Cre12.g503150 Chlamydomonas reinhardtii HOM05D003008 ORTHO05D003346 3.5e-21 105.5 139 38.1
CANSAT35G1991 Cannabis sativa HOM05D003008 ORTHO05D003346 8.6e-20 100.9 110 49.1
unitig_92.g28176 Utricularia gibba HOM05D003008 ORTHO05D003346 8.3e-15 84.3 51 70.6
Atru.chr2.1568 Acer truncatum HOM05D003008 ORTHO05D003346 5.2e-09 65.1 33 87.9
BcaB03g13821 Brassica carinata HOM05D003008 ORTHO05D003346 1.5e-08 63.5 60 50.0


User provided reference genes

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