Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 2.3e-134 482.3 245 100.0
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.4e-115 419.9 230 93.0
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 5.5e-112 407.9 231 90.9
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 2.5e-109 399.1 230 89.6
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 2.1e-108 396.0 230 89.1
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 7.1e-104 380.9 231 86.1
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 3.5e-103 378.6 234 85.5
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 5.3e-91 338.2 232 78.4
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 4.4e-85 318.5 241 70.5
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 1.3e-84 317.0 233 71.2
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.4e-83 313.5 219 74.4
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.2e-81 306.2 242 68.6
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 6.5e-81 304.7 242 69.4
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 6.5e-81 304.7 238 66.8
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 4.2e-80 302.0 234 69.7
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 6.1e-79 298.1 261 62.8
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 7.9e-79 297.7 260 63.5
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 8.8e-78 294.3 233 67.4
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 3.3e-77 292.4 234 67.5
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 5.7e-77 291.6 229 67.7
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 3.7e-76 288.9 238 67.2
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 2.4e-75 286.2 213 68.5
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 5.3e-75 285.0 239 66.9
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 3.5e-74 282.3 246 63.4
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 1.0e-73 280.8 221 67.4
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 1.3e-73 280.4 239 63.2
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 1.7e-73 280.0 235 63.8
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 1.7e-73 280.0 216 67.1
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 3.8e-73 278.9 219 66.7
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 5.0e-73 278.5 223 68.2
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 1.1e-72 277.3 241 63.1
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 1.9e-72 276.6 239 62.3
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 2.5e-72 276.2 244 62.3
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 2.5e-72 276.2 241 61.8
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 4.2e-72 275.4 242 63.2
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 4.2e-72 275.4 242 63.2
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 7.2e-72 274.6 238 63.9
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 9.4e-72 274.2 242 62.8
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 9.4e-72 274.2 224 66.5
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 9.4e-72 274.2 241 61.4
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 2.1e-71 273.1 212 67.5
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 2.7e-71 272.7 241 64.3
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 2.7e-71 272.7 224 65.2
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 2.7e-71 272.7 240 63.3
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 3.6e-71 272.3 212 68.9
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.7e-71 271.9 224 65.6
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 8.0e-71 271.2 242 61.6
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.8e-70 270.0 221 64.7
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.8e-70 270.0 221 64.7
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 2.3e-70 269.6 242 60.7
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 4.0e-70 268.9 236 63.1
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 5.2e-70 268.5 262 59.9
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 6.7e-70 268.1 234 63.2
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 6.7e-70 268.1 238 63.0
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.2e-69 267.3 232 60.8
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 1.5e-69 266.9 243 61.3
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 2.0e-69 266.5 241 61.4
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 3.3e-69 265.8 242 61.2
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 3.3e-69 265.8 240 60.4
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 4.4e-69 265.4 241 61.4
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 9.7e-69 264.2 230 60.9
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.7e-68 263.5 241 62.7
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.7e-68 263.5 241 62.2
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 1.7e-68 263.5 219 63.9
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 2.2e-68 263.1 213 64.3
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 2.2e-68 263.1 221 64.3
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.1e-67 260.8 240 59.6
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 1.4e-67 260.4 234 61.1
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 1.8e-67 260.0 213 63.8
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 1.8e-67 260.0 241 60.2
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 9.1e-67 257.7 235 60.0
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 1.6e-66 256.9 235 59.6
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 2.0e-66 256.5 241 58.9
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 4.5e-66 255.4 216 62.0
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 4.5e-66 255.4 234 60.7
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 7.7e-66 254.6 219 61.6
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 1.0e-65 254.2 241 58.9
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 2.9e-65 252.7 238 59.2
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 5.0e-65 251.9 214 62.1
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 6.5e-65 251.5 225 59.6
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 1.5e-64 250.4 236 60.2
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.9e-64 250.0 289 52.9
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 5.5e-64 248.4 236 61.0
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 7.2e-64 248.1 220 62.7
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.6e-63 246.9 214 61.7
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.6e-63 246.9 253 55.7
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 4.7e-63 245.4 243 55.1
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 6.1e-63 245.0 241 56.8
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 1.8e-62 243.4 232 58.2
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 1.2e-61 240.7 240 56.2
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 3.4e-61 239.2 222 57.2
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 2.8e-60 236.1 309 47.6
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 6.3e-60 235.0 220 57.7
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 2.0e-58 229.9 240 56.7
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 1.7e-57 226.9 218 59.2
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 5.0e-57 225.3 245 54.3
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 6.5e-57 224.9 240 53.3
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 1.1e-56 224.2 244 52.9
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 1.1e-56 224.2 244 52.9
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 1.1e-56 224.2 241 55.2
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.9e-56 223.4 205 62.0
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 4.2e-56 222.2 243 52.7
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 5.5e-56 221.9 205 61.0
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 9.5e-56 221.1 243 52.3
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 2.8e-55 219.5 252 51.2
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 3.0e-54 216.1 219 53.0
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 6.8e-54 214.9 236 53.4
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 6.8e-54 214.9 236 53.4
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 1.5e-53 213.8 252 52.0
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 1.5e-53 213.8 236 53.0
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.5e-53 213.8 158 74.1
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 2.0e-53 213.4 236 53.0
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 1.7e-52 210.3 241 51.0
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 6.3e-52 208.4 232 52.6
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 5.4e-51 205.3 195 54.9
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 4.5e-50 202.2 237 52.7
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 3.0e-46 189.5 169 61.5
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 9.2e-43 177.9 239 43.9
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 2.3e-41 173.3 167 56.3
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 1.6e-31 140.6 161 48.4
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 4.0e-30 136.0 131 55.7
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 8.9e-30 134.8 125 60.0
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 6.6e-25 118.6 296 32.4
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 5.6e-24 115.5 203 37.4
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 7.1e-19 98.6 114 49.1
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 9.2e-19 98.2 103 53.4
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 2.3e-17 93.6 55 83.6
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 1.1e-16 91.3 62 67.7
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 4.7e-15 85.9 55 72.7
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.1e-11 74.7 47 72.3
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 1.0e-09 68.2 211 28.4
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 3.6e-07 59.7 311 23.8
Sopen06g016500 Solanum pennellii HOM05D002744 ORTHO05D006546 4.0e-06 56.2 45 71.1


User provided reference genes

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