Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 7.9e-65 250.4 133 100.0
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 8.8e-56 220.3 125 95.2
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 8.8e-56 220.3 125 95.2
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 1.1e-55 219.9 130 89.2
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 2.0e-55 219.2 125 94.4
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 3.3e-55 218.4 125 92.0
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 6.9e-53 210.7 125 89.6
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 1.2e-49 199.9 163 70.6
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 7.4e-47 190.7 130 76.2
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 2.8e-46 188.7 124 80.6
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 5.9e-44 181.0 122 77.9
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 5.0e-43 177.9 126 72.2
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 5.0e-43 177.9 124 73.4
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 6.5e-43 177.6 124 77.4
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 6.5e-43 177.6 124 74.2
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 8.5e-43 177.2 124 75.8
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 1.1e-42 176.8 124 71.8
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 1.4e-42 176.4 124 76.6
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 1.4e-42 176.4 124 75.8
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 1.4e-42 176.4 124 71.8
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 1.4e-42 176.4 128 72.7
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 1.9e-42 176.0 124 72.6
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 3.2e-42 175.3 124 75.8
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 4.2e-42 174.9 124 75.8
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 5.5e-42 174.5 118 77.1
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 7.2e-42 174.1 124 73.4
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 9.4e-42 173.7 124 75.0
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 9.4e-42 173.7 130 72.3
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 9.4e-42 173.7 122 75.4
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.1e-41 172.6 125 73.6
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 2.7e-41 172.2 124 72.6
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 4.7e-41 171.4 127 70.1
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 8.0e-41 170.6 124 71.0
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.0e-40 170.2 124 71.8
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.4e-40 169.9 124 72.6
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.4e-40 169.9 130 70.0
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.4e-40 169.9 124 71.8
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 1.4e-40 169.9 118 75.4
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.3e-40 169.1 127 72.4
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 3.0e-40 168.7 124 70.2
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 3.0e-40 168.7 124 70.2
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 3.0e-40 168.7 124 73.4
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 3.9e-40 168.3 124 74.2
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 3.9e-40 168.3 124 74.2
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 6.7e-40 167.5 131 68.7
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 6.7e-40 167.5 127 71.7
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 6.7e-40 167.5 121 70.2
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 8.8e-40 167.2 124 71.8
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 8.8e-40 167.2 124 69.4
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 1.1e-39 166.8 120 70.8
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 1.5e-39 166.4 124 67.7
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 1.5e-39 166.4 124 70.2
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 1.5e-39 166.4 121 70.2
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 1.5e-39 166.4 124 71.0
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 2.6e-39 165.6 124 69.4
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.3e-39 165.2 127 70.1
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 4.4e-39 164.9 124 70.2
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 4.4e-39 164.9 126 71.4
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 4.4e-39 164.9 118 74.6
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 5.7e-39 164.5 124 69.4
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 5.7e-39 164.5 124 71.0
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 5.7e-39 164.5 122 69.7
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 7.4e-39 164.1 124 66.9
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 9.7e-39 163.7 121 66.1
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 9.7e-39 163.7 121 66.1
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 1.3e-38 163.3 124 70.2
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.3e-38 163.3 124 66.9
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.3e-38 163.3 124 66.9
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 1.7e-38 162.9 124 68.5
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 1.7e-38 162.9 124 70.2
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 2.2e-38 162.5 131 64.1
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 2.8e-38 162.2 121 70.2
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 8.2e-38 160.6 124 66.9
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 4.1e-37 158.3 120 70.0
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 7.0e-37 157.5 124 68.5
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 1.6e-36 156.4 121 67.8
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 1.6e-36 156.4 122 68.9
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 4.5e-36 154.8 124 68.5
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 2.2e-35 152.5 121 66.1
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 2.9e-35 152.1 133 60.9
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 3.8e-35 151.8 122 65.6
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 8.5e-35 150.6 121 63.6
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 8.5e-35 150.6 121 66.9
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 1.1e-34 150.2 124 62.1
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 1.5e-34 149.8 124 65.3
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 1.5e-34 149.8 124 62.9
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 3.2e-34 148.7 120 64.2
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 5.5e-34 147.9 125 64.0
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 4.7e-33 144.8 106 67.9
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 4.0e-32 141.7 124 61.3
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 4.0e-32 141.7 127 62.2
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 8.8e-32 140.6 124 60.5
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 3.4e-31 138.7 90 77.8
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 3.4e-31 138.7 124 60.5
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 1.7e-30 136.3 124 58.9
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 6.3e-30 134.4 113 64.6
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 1.4e-29 133.3 95 66.3
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 1.4e-29 133.3 124 58.9
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 4.1e-29 131.7 95 66.3
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 7.0e-29 131.0 100 62.0
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 1.2e-28 130.2 124 58.9
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 1.0e-27 127.1 122 59.0
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.7e-27 126.3 97 69.1
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 2.5e-26 122.5 129 55.0
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 2.5e-26 122.5 124 55.6
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 3.2e-26 122.1 124 54.8
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 4.2e-26 121.7 97 66.0
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 4.2e-26 121.7 97 66.0
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 4.2e-26 121.7 97 66.0
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 5.5e-26 121.3 124 54.8
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 1.2e-25 120.2 93 66.7
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 2.1e-25 119.4 89 68.5
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 2.7e-25 119.0 124 50.0
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 4.7e-25 118.2 115 60.9
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 4.7e-25 118.2 115 60.9
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.0e-24 117.1 97 67.0
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 1.2e-23 113.6 95 64.2
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 1.2e-23 113.6 95 64.2
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 1.2e-23 113.6 124 49.2
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 1.7e-22 109.8 118 50.0
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 2.2e-22 109.4 125 51.2
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 1.8e-21 106.3 127 43.3
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 2.6e-15 85.9 113 48.7
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 2.4e-13 79.3 50 76.0
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 1.2e-12 77.0 121 38.0
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 1.0e-11 73.9 120 40.8
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 2.3e-08 62.8 71 50.7
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 5.8e-07 58.2 53 58.5
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 2.9e-06 55.8 55 58.2
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 8.3e-06 54.3 55 56.4
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 8.3e-06 54.3 55 56.4


User provided reference genes

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