Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G388.49 Capsicum annuum HOM05D000435 ORTHO05D012716 4.2e-31 137.5 75 100.0
PGSC0003DMG400021343 Solanum tuberosum HOM05D000435 ORTHO05D000430 2.5e-23 111.7 71 90.1
Solyc01g006720.4 Solanum lycopersicum HOM05D000435 ORTHO05D000430 5.5e-23 110.5 70 88.6
Sopen01g002710 Solanum pennellii HOM05D000435 ORTHO05D000430 4.4e-20 100.9 70 82.9
Peaxi162Scf00210g01615 Petunia axillaris HOM05D000435 ORTHO05D000430 7.2e-15 83.6 67 74.6
Nitab4.5_0002599g0030 Nicotiana tabacum HOM05D000435 ORTHO05D000430 1.6e-14 82.4 69 76.8
Nitab4.5_0000429g0030 Nicotiana tabacum HOM05D000435 ORTHO05D000430 4.0e-13 77.8 54 85.2
FvH4_6g21010 Fragaria vesca HOM05D000435 ORTHO05D000430 2.0e-12 75.5 53 79.2
FAN02G3368 Fragaria x ananassa HOM05D000435 ORTHO05D000430 2.0e-12 75.5 53 79.2
FAN14G0489 Fragaria x ananassa HOM05D000435 ORTHO05D000430 2.0e-12 75.5 53 79.2
FAN05G2031 Fragaria x ananassa HOM05D000435 ORTHO05D000430 4.4e-12 74.3 53 77.4
FAN09G4773 Fragaria x ananassa HOM05D000435 ORTHO05D000430 5.7e-12 73.9 53 77.4
Prupe.7G089500 Prunus persica HOM05D000435 ORTHO05D000430 5.7e-12 73.9 65 70.8
Lj5g0020894 Lotus japonicus HOM05D000435 ORTHO05D000430 7.5e-12 73.6 64 68.8
BcaB05g21665 Brassica carinata HOM05D000435 ORTHO05D000430 1.7e-11 72.4 62 72.6
Potri.006G199500 Populus trichocarpa HOM05D000435 ORTHO05D000430 2.8e-11 71.6 65 70.8
Manes.08G037200 Manihot esculenta HOM05D000435 ORTHO05D000430 3.7e-11 71.2 65 63.1
FAN05G4339 Fragaria x ananassa HOM05D000435 ORTHO05D000430 4.8e-11 70.9 53 75.5
MD12G1045900 Malus domestica HOM05D000435 ORTHO05D000430 4.8e-11 70.9 62 69.4
CANSAT64G1430 Cannabis sativa HOM05D000435 ORTHO05D000430 6.3e-11 70.5 52 80.8
GSVIVG01022526001 Vitis vinifera HOM05D000435 ORTHO05D000430 1.1e-10 69.7 64 67.2
Ciclev10011143m.g Citrus clementina HOM05D000435 ORTHO05D000430 1.4e-10 69.3 65 67.7
Oeu020157.1 Olea europaea HOM05D000435 ORTHO05D000430 1.4e-10 69.3 67 65.7
CiPaw.11G082100 Carya illinoinensis HOM05D000435 ORTHO05D000430 1.8e-10 68.9 65 61.5
A10p29870 Brassica napus HOM05D000435 ORTHO05D000430 2.4e-10 68.6 62 67.7
BolC9t59768H Brassica oleracea HOM05D000435 ORTHO05D000430 2.4e-10 68.6 62 67.7
CSS0028515 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 2.4e-10 68.6 65 64.6
BcaC06g32563 Brassica carinata HOM05D000435 ORTHO05D000430 3.1e-10 68.2 62 67.7
COL.COLO4_29496 Corchorus olitorius HOM05D000435 ORTHO05D000430 3.1e-10 68.2 65 63.1
Potri.016G065900 Populus trichocarpa HOM05D000435 ORTHO05D000430 3.1e-10 68.2 59 72.9
Sp6g36340 Schrenkiella parvula HOM05D000435 ORTHO05D000430 3.1e-10 68.2 62 67.7
CSS0024033 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 5.3e-10 67.4 65 63.1
Haze_20126 Corylus avellana HOM05D000435 ORTHO05D000430 5.3e-10 67.4 64 70.3
Dinv25080 Davidia involucrata HOM05D000059 ORTHO05D000430 5.3e-10 67.4 63 63.5
Migut.L01842 Erythranthe guttata HOM05D000435 ORTHO05D000430 5.3e-10 67.4 74 59.5
Phvul.007G265300 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 5.3e-10 67.4 66 66.7
Lalb_Chr02g0154221 Lupinus albus HOM05D000435 ORTHO05D000430 7.0e-10 67.0 67 68.7
AT5G06530 Arabidopsis thaliana HOM05D000435 ORTHO05D000430 9.1e-10 66.6 62 69.4
Oeu045027.1 Olea europaea HOM05D000435 ORTHO05D000430 9.1e-10 66.6 67 64.2
C09p70240 Brassica napus HOM05D000435 ORTHO05D000430 1.2e-09 66.2 62 66.1
Ca_11654_v3 Cicer arietinum L. HOM05D000435 ORTHO05D000430 1.2e-09 66.2 64 65.6
Glyma.02G188300 Glycine max HOM05D000435 ORTHO05D000430 1.2e-09 66.2 66 65.2
Aa31sc336G20 Aethionema arabicum HOM05D000435 ORTHO05D000430 1.6e-09 65.9 51 78.4
C02p02740 Brassica napus HOM05D000435 ORTHO05D000430 2.0e-09 65.5 54 75.9
Cpa.g.sc222.15 Carica papaya HOM05D000435 ORTHO05D000430 2.0e-09 65.5 68 66.2
Duzib093G0068 Durio zibethinus HOM05D000435 ORTHO05D000430 2.0e-09 65.5 67 64.2
Medtr1g054935 Medicago truncatula HOM05D000435 ORTHO05D000430 2.7e-09 65.1 65 61.5
Sabra06G0153400 Salix brachista HOM05D000435 ORTHO05D000430 2.7e-09 65.1 65 63.1
VMungo0720G1776 Vigna mungo HOM05D000435 ORTHO05D000430 2.7e-09 65.1 68 64.7
AL6G16620 Arabidopsis lyrata HOM05D000435 ORTHO05D000430 3.5e-09 64.7 62 69.4
Carub.0006s0541 Capsella rubella HOM05D000435 ORTHO05D000430 3.5e-09 64.7 62 69.4
ECA248G3236 Erigeron canadensis HOM05D000435 ORTHO05D000430 3.5e-09 64.7 64 59.4
Cfa020069 Carpinus fangiana HOM05D000435 ORTHO05D000430 5.9e-09 63.9 64 70.3
Psat6g087200 Pisum sativum HOM05D000435 ORTHO05D000430 5.9e-09 63.9 65 63.1
TPR.G21233 Trifolium pratense HOM05D000435 ORTHO05D000430 5.9e-09 63.9 65 61.5
Atru.chr8.1286 Acer truncatum HOM05D000435 ORTHO05D000430 1.0e-08 63.2 57 73.7
MSTRG.10412 Avicennia marina HOM05D000435 ORTHO05D000430 1.0e-08 63.2 69 62.3
CARHR206670 Cardamine hirsuta HOM05D000435 ORTHO05D000430 1.0e-08 63.2 63 68.3
Lsat_1_v5_gn_1_56901 Lactuca sativa HOM05D000435 ORTHO05D000430 1.3e-08 62.8 48 72.9
BolC2t06239H Brassica oleracea HOM05D000435 ORTHO05D000430 1.7e-08 62.4 54 74.1
PGR142G3890 Punica granatum HOM05D000435 ORTHO05D000430 1.7e-08 62.4 52 71.2
HanXRQChr11g0347601 Helianthus annuus HOM05D000435 ORTHO05D000430 2.2e-08 62.0 49 69.4
SGA_v2.0_scaffold41G15770 Striga asiatica HOM05D000435 ORTHO05D000430 2.2e-08 62.0 50 68.0
Cc06_g06960 Coffea canephora HOM05D000435 ORTHO05D000430 2.9e-08 61.6 54 66.7
Gohir.A09G132100 Gossypium hirsutum HOM05D000435 ORTHO05D000430 5.0e-08 60.8 50 68.0
Nn6g34589 Nelumbo nucifera HOM05D000435 ORTHO05D000430 6.5e-08 60.5 57 64.9
Gohir.A01G199700 Gossypium hirsutum HOM05D000435 ORTHO05D000430 1.1e-07 59.7 68 58.8
Gohir.D01G123000 Gossypium hirsutum HOM05D000435 ORTHO05D000430 1.1e-07 59.7 58 67.2
Gorai.002G153900 Gossypium raimondii HOM05D000435 ORTHO05D000430 1.1e-07 59.7 58 67.2
DCAR_020679 Daucus carota HOM05D000435 ORTHO05D000430 1.5e-07 59.3 64 60.9
Thhalv10012760m.g Eutrema salsugineum HOM05D000435 ORTHO05D000430 1.5e-07 59.3 63 63.5
Gohir.D01G189700 Gossypium hirsutum HOM05D000435 ORTHO05D000430 1.9e-07 58.9 68 58.8
Gorai.002G233500 Gossypium raimondii HOM05D000435 ORTHO05D000430 1.9e-07 58.9 68 58.8
TAR633G2167 Trochodendron aralioides HOM05D000435 ORTHO05D012716 1.9e-07 58.9 63 61.9
Actinidia03854 Actinidia chinensis HOM05D000435 ORTHO05D000430 2.5e-07 58.5 67 62.7
Actinidia03964 Actinidia chinensis HOM05D000435 ORTHO05D000430 2.5e-07 58.5 67 62.7
Actinidia37777 Actinidia chinensis HOM05D000435 ORTHO05D000430 2.5e-07 58.5 61 62.3
Eucgr.K01911 Eucalyptus grandis HOM05D000435 ORTHO05D000430 2.5e-07 58.5 69 60.9
Gohir.A01G135900 Gossypium hirsutum HOM05D000435 ORTHO05D000430 2.5e-07 58.5 58 65.5
Gohir.D09G128400 Gossypium hirsutum HOM05D000435 ORTHO05D000430 3.2e-07 58.2 70 57.1
Gorai.006G147000 Gossypium raimondii HOM05D000435 ORTHO05D000430 3.2e-07 58.2 70 57.1
HanXRQChr01g0026181 Helianthus annuus HOM05D000435 ORTHO05D000430 4.2e-07 57.8 62 58.1
CiPaw.09G024000 Carya illinoinensis HOM05D000435 ORTHO05D000430 5.5e-07 57.4 56 60.7
Duzib128G1358 Durio zibethinus HOM05D000435 ORTHO05D000430 7.2e-07 57.0 65 60.0
Lsat_1_v5_gn_6_34200 Lactuca sativa HOM05D000435 ORTHO05D000430 7.2e-07 57.0 69 52.2
ECA233G6042 Erigeron canadensis HOM05D000435 ORTHO05D000430 1.2e-06 56.2 68 50.0
Sed0023924 Sechium edule HOM05D000435 ORTHO05D000430 1.2e-06 56.2 65 60.0
THA.LOC104826788 Tarenaya hassleriana HOM05D000435 ORTHO05D000430 1.6e-06 55.8 58 60.3
TWI74G0089 Tripterygium wilfordii HOM05D000435 ORTHO05D000430 1.6e-06 55.8 64 59.4
TWI53G1860 Tripterygium wilfordii HOM05D000435 ORTHO05D000430 2.7e-06 55.1 49 67.3
EL10Ac5g11808 Beta vulgaris HOM05D000435 ORTHO05D000430 3.6e-06 54.7 66 54.5
RcHm_v2.0_Chr3g0477391 Rosa chinensis HOM05D000435 ORTHO05D000430 3.6e-06 54.7 42 66.7
Glyma.10G086800 Glycine max HOM05D000435 ORTHO05D000430 4.7e-06 54.3 72 58.3
COL.COLO4_02846 Corchorus olitorius HOM05D000435 ORTHO05D012716 6.1e-06 53.9 36 72.2
AUR62038429 Chenopodium quinoa HOM05D000435 ORTHO05D000430 8.0e-06 53.5 65 53.8
Sc01g0005640 Simmondsia chinensis HOM05D000435 ORTHO05D000430 8.0e-06 53.5 51 62.7


User provided reference genes

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