Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 2.3e-196 688.7 347 100.0
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 1.4e-185 652.9 338 96.7
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 3.1e-185 651.7 338 96.4
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 6.8e-185 650.6 338 96.2
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 6.4e-183 644.0 338 95.3
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 7.8e-181 637.1 338 94.4
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 3.4e-176 621.7 338 89.9
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 5.8e-176 620.9 337 91.1
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 3.8e-175 618.2 338 89.1
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 3.8e-175 618.2 338 90.2
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 8.4e-175 617.1 338 89.6
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 1.4e-174 616.3 338 90.5
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 1.4e-174 616.3 338 90.5
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 1.9e-174 615.9 338 89.9
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 2.4e-174 615.5 338 89.6
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 5.4e-174 614.4 338 89.9
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 7.1e-174 614.0 338 89.1
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 7.1e-174 614.0 334 89.8
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 1.2e-173 613.2 338 89.1
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 1.2e-173 613.2 338 89.3
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 2.1e-173 612.5 338 89.1
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 4.6e-173 611.3 338 89.9
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 4.6e-173 611.3 338 89.6
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 6.0e-173 610.9 338 89.1
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 1.0e-172 610.1 338 89.1
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.0e-172 610.1 333 89.8
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.0e-172 610.1 333 89.8
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.0e-172 610.1 333 89.8
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 3.9e-172 608.2 333 89.5
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 5.1e-172 607.8 339 88.8
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 1.1e-171 606.7 338 89.1
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.9e-171 605.9 338 88.8
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 2.5e-171 605.5 338 87.6
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 3.3e-171 605.1 341 88.0
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 3.3e-171 605.1 338 89.1
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 3.3e-171 605.1 331 89.7
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 5.6e-171 604.4 338 88.5
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 7.3e-171 604.0 340 88.2
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 9.6e-171 603.6 338 87.9
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 9.6e-171 603.6 361 84.2
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 1.3e-170 603.2 331 89.4
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 1.3e-170 603.2 338 88.8
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 1.6e-170 602.8 340 87.9
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 2.1e-170 602.4 375 81.6
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 3.6e-170 601.7 338 87.9
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 6.2e-170 600.9 340 87.9
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 6.2e-170 600.9 333 88.3
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 6.2e-170 600.9 334 88.0
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 6.2e-170 600.9 334 88.0
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 6.2e-170 600.9 338 87.3
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 6.2e-170 600.9 338 87.6
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 6.2e-170 600.9 338 87.6
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 2.4e-169 599.0 338 87.9
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 2.4e-169 599.0 338 87.0
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 3.1e-169 598.6 334 88.6
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 3.1e-169 598.6 338 87.9
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 3.1e-169 598.6 338 87.3
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 6.9e-169 597.4 338 87.0
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 1.2e-168 596.7 341 86.8
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 1.5e-168 596.3 337 87.5
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 1.5e-168 596.3 328 88.4
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 2.0e-168 595.9 334 87.7
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 4.5e-168 594.7 339 86.1
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 5.8e-168 594.3 340 87.1
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 1.3e-167 593.2 338 83.7
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 2.2e-167 592.4 337 87.5
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 4.9e-167 591.3 328 88.7
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 6.4e-167 590.9 340 86.5
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 8.4e-167 590.5 338 85.5
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 8.4e-167 590.5 338 85.5
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 1.1e-166 590.1 338 85.5
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 1.9e-166 589.3 337 86.6
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 1.9e-166 589.3 341 85.9
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 3.2e-166 588.6 337 86.6
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 4.2e-166 588.2 341 85.6
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 5.4e-166 587.8 327 87.8
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 9.3e-166 587.0 341 85.6
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 1.2e-165 586.6 337 87.2
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 1.6e-165 586.3 338 87.0
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 2.7e-165 585.5 338 82.5
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 3.5e-165 585.1 338 84.9
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 3.5e-165 585.1 338 84.9
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 1.0e-164 583.6 334 85.6
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 1.8e-164 582.8 336 85.7
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 2.3e-164 582.4 328 87.2
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 3.9e-164 581.6 338 85.5
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 6.7e-164 580.9 311 92.0
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 3.3e-163 578.6 338 83.4
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 7.4e-163 577.4 338 83.7
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 9.6e-163 577.0 338 85.8
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 1.1e-161 573.5 338 83.1
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 1.4e-161 573.2 338 83.1
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 2.4e-161 572.4 338 82.5
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 9.9e-160 567.0 338 81.4
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 3.8e-159 565.1 344 80.5
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 3.8e-159 565.1 365 79.2
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 4.2e-158 561.6 338 82.0
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 9.3e-158 560.5 333 83.2
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 3.0e-156 555.4 333 82.0
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 1.1e-155 553.5 394 73.6
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 1.1e-155 553.5 338 79.6
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 1.5e-155 553.1 344 78.5
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 1.9e-155 552.7 328 82.6
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 1.9e-155 552.7 356 79.2
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 3.4e-152 542.0 338 76.9
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 1.4e-150 536.6 321 79.8
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 1.9e-150 536.2 338 81.4
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 1.2e-149 533.5 338 75.7
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 1.8e-148 529.6 338 76.0
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 4.8e-146 521.5 311 81.4
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 1.1e-145 520.4 338 74.3
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 3.1e-145 518.8 338 72.8
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 3.8e-143 511.9 338 73.1
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 3.6e-141 505.4 342 71.9
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 1.2e-136 490.3 313 75.4
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 1.7e-135 486.5 334 71.3
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 3.0e-132 475.7 312 74.4
Dinv43690 Davidia involucrata HOM05D004324 ORTHO05D004840 3.0e-124 449.1 338 70.4
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 1.4e-121 440.3 331 67.7
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 4.1e-121 438.7 319 65.8
Sed0023731 Sechium edule HOM05D004324 ORTHO05D004840 1.7e-119 433.3 252 84.1
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 1.4e-116 423.7 238 86.1
Atru.chr5.284 Acer truncatum HOM05D004324 ORTHO05D004840 4.8e-114 415.2 245 83.7
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 9.1e-113 411.0 245 84.5
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 2.0e-112 409.8 249 80.7
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 5.7e-107 391.7 327 63.6
MBI04_g35670_MAGBIO Magnolia biondii HOM05D004324 ORTHO05D004840 1.8e-105 386.7 220 86.8
FvH4_7g11450 Fragaria vesca HOM05D004324 ORTHO05D004840 7.0e-105 384.8 214 87.9
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 5.9e-104 381.7 207 90.8
Medtr4g024940 Medicago truncatula HOM05D004324 ORTHO05D004840 1.9e-102 376.7 231 79.2
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 1.9e-94 350.1 193 87.6
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 5.6e-94 348.6 325 56.0
Gohir.A05G252532 Gossypium hirsutum HOM05D004324 ORTHO05D004840 3.1e-92 342.8 195 87.2
AagrBONN_evm.TU.Sc2ySwM_368.1743 Anthoceros agrestis HOM05D004324 ORTHO05D004840 9.2e-89 331.3 200 79.5
Medtr0088s0100 Medicago truncatula HOM05D004324 ORTHO05D004840 1.1e-84 317.8 321 52.6
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 1.0e-79 301.2 241 63.1
Sc26g0001270 Simmondsia chinensis HOM05D004324 ORTHO05D004840 4.0e-76 289.3 171 84.8
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 6.4e-74 282.0 194 67.5
RcHm_v2.0_Chr1g0349761 Rosa chinensis HOM05D004324 ORTHO05D004840 1.1e-62 244.6 145 82.8
Gohir.A05G252466 Gossypium hirsutum HOM05D004324 ORTHO05D004840 4.3e-62 242.7 134 88.8
AL6G42730 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 1.6e-53 214.2 151 68.9
Psat6g217960 Pisum sativum HOM05D004324 ORTHO05D004840 1.7e-50 204.1 154 63.0
CDE02G4314 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 1.3e-45 188.0 147 68.0
arahy.Tifrunner.gnm1.ann1.V33WN8 Arachis hypogaea HOM05D004324 ORTHO05D004840 3.0e-39 166.8 86 90.7
Actinidia02863 Actinidia chinensis HOM05D004324 ORTHO05D004840 8.7e-39 165.2 102 79.4
MD02G1206600 Malus domestica HOM05D004324 ORTHO05D004840 4.5e-35 152.9 82 87.8
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 6.5e-34 149.1 86 86.0
Duzib177G0443 Durio zibethinus HOM05D004324 ORTHO05D004840 4.2e-33 146.4 100 76.0
MD02G1206500 Malus domestica HOM05D004324 ORTHO05D004840 1.2e-32 144.8 74 91.9
SEGI_10460 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 2.1e-32 144.1 104 67.3
CAN.G23.23 Capsicum annuum HOM05D004324 ORTHO05D004840 1.3e-31 141.4 78 87.2
Duzib106G1980 Durio zibethinus HOM05D004324 ORTHO05D004840 9.4e-25 118.6 88 67.0
Actinidia02867 Actinidia chinensis HOM05D004324 ORTHO05D004840 7.9e-24 115.5 108 59.3
Sc26g0001260 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.8e-23 114.4 126 54.0
Prupe.7G087800 Prunus persica HOM05D004324 ORTHO05D004840 5.7e-22 109.4 123 56.9
Actinidia31395 Actinidia chinensis HOM05D004324 ORTHO05D004840 8.2e-21 105.5 77 70.1
MCO07G634 Micromonas commoda HOM05D004324 ORTHO05D004840 8.5e-18 95.5 285 30.2
Pp3s30_709 Physcomitrium patens HOM05D004324 ORTHO05D004840 1.9e-17 94.4 234 29.9
Psat0s13993g0040 Pisum sativum HOM05D004324 ORTHO05D004840 9.4e-17 92.0 74 62.2
Cfa025533 Carpinus fangiana HOM05D000146 ORTHO05D004840 2.1e-16 90.9 319 25.4
Ca_28979_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 2.3e-15 87.4 281 29.5
Cfa023222 Carpinus fangiana HOM05D004324 ORTHO05D004840 7.4e-14 82.4 268 30.2
Prupe.2G076400 Prunus persica HOM05D004324 ORTHO05D004840 1.0e-10 72.0 53 69.8
Actinidia02866 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.7e-10 71.2 103 45.6
Cfa024978 Carpinus fangiana HOM05D004324 ORTHO05D034102 6.1e-08 62.8 247 26.3
Aa31sc49G50 Aethionema arabicum HOM05D004324 ORTHO05D004840 1.0e-07 62.0 45 66.7
Medtr4g019730 Medicago truncatula HOM05D000814 ORTHO05D004840 1.4e-07 61.6 42 69.0


User provided reference genes

Program Settings