Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G375.37 Capsicum annuum HOM05D002920 ORTHO05D003118 0.0e+00 1198.7 630 100.0
CAN.G193.3 Capsicum annuum HOM05D002920 ORTHO05D003118 1.3e-287 992.6 740 76.6
Solyc04g076540.4 Solanum lycopersicum HOM05D002920 ORTHO05D003118 2.7e-280 968.4 741 74.8
Nitab4.5_0000131g0060 Nicotiana tabacum HOM05D002920 ORTHO05D003118 6.9e-276 953.7 747 73.6
Sopen04g030270 Solanum pennellii HOM05D002920 ORTHO05D003118 2.0e-275 952.2 741 73.8
Peaxi162Scf01112g00017 Petunia axillaris HOM05D002920 ORTHO05D003118 1.5e-254 882.9 747 69.3
Nitab4.5_0005345g0040 Nicotiana tabacum HOM05D002920 ORTHO05D003118 2.8e-229 798.9 1092 49.5
Cc10_g08510 Coffea canephora HOM05D002920 ORTHO05D003118 2.2e-218 762.7 746 61.9
Dinv44873 Davidia involucrata HOM05D002920 ORTHO05D003118 7.2e-217 757.7 749 61.3
Migut.N02861 Erythranthe guttata HOM05D002920 ORTHO05D003118 8.8e-207 724.2 750 58.9
Rhsim07G0212900 Rhododendron simsii HOM05D002920 ORTHO05D003118 2.0e-206 723.0 773 57.7
Peaxi162Scf00160g01034 Petunia axillaris HOM05D002920 ORTHO05D003118 2.6e-206 722.6 752 59.0
TAR625G0757 Trochodendron aralioides HOM05D002920 ORTHO05D003118 2.8e-205 719.2 747 58.9
GSVIVG01009199001 Vitis vinifera HOM05D002920 ORTHO05D003118 2.0e-203 713.0 749 59.1
Nitab4.5_0000354g0140 Nicotiana tabacum HOM05D002920 ORTHO05D003118 1.7e-202 709.9 777 57.3
MSTRG.24431 Avicennia marina HOM05D002920 ORTHO05D003118 1.1e-201 707.2 743 57.9
Cfa013811 Carpinus fangiana HOM05D002920 ORTHO05D003118 1.9e-201 706.4 757 58.1
Nitab4.5_0005065g0010 Nicotiana tabacum HOM05D002920 ORTHO05D003118 1.9e-201 706.4 769 57.0
Thecc.08G073100 Theobroma cacao HOM05D002920 ORTHO05D003118 1.4e-199 700.3 743 58.4
Lj1g0004035 Lotus japonicus HOM05D002920 ORTHO05D003118 2.3e-199 699.5 740 57.2
SGA_v2.0_scaffold235G43665 Striga asiatica HOM05D002920 ORTHO05D003118 1.2e-198 697.2 773 56.0
TAR381G0245 Trochodendron aralioides HOM05D002920 ORTHO05D003118 7.5e-198 694.5 746 57.4
Aqoxy5G01357 Aquilegia oxysepala HOM05D002920 ORTHO05D003118 2.9e-197 692.6 746 57.4
Actinidia19621 Actinidia chinensis HOM05D002920 ORTHO05D003118 3.7e-197 692.2 756 55.8
TWI56G0278 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 6.4e-197 691.4 755 56.6
TPR.G6371 Trifolium pratense HOM05D002920 ORTHO05D003118 1.1e-196 690.6 740 56.6
CiPaw.07G163600 Carya illinoinensis HOM05D002920 ORTHO05D003118 1.8e-196 689.9 749 57.5
Atru.chr13.989 Acer truncatum HOM05D002920 ORTHO05D003118 2.4e-196 689.5 751 57.5
Nn1g05621 Nelumbo nucifera HOM05D002920 ORTHO05D003118 1.0e-194 684.1 755 56.4
arahy.Tifrunner.gnm1.ann1.3DHU48 Arachis hypogaea HOM05D002920 ORTHO05D003118 1.3e-194 683.7 740 56.9
Glyma.06G098300 Glycine max HOM05D002920 ORTHO05D003118 2.9e-194 682.6 743 56.1
CSS0043684 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 3.9e-194 682.2 754 55.0
CAN.G1104.5 Capsicum annuum HOM05D002920 ORTHO05D003118 3.9e-194 682.2 734 56.1
Ca_16019_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 6.6e-194 681.4 735 56.9
Psat5g047200 Pisum sativum HOM05D002920 ORTHO05D003118 6.6e-194 681.4 735 56.7
Prupe.1G535700 Prunus persica HOM05D002920 ORTHO05D003118 6.6e-194 681.4 783 55.8
Glyma.04G096600 Glycine max HOM05D002920 ORTHO05D003118 1.5e-193 680.2 737 56.0
Lalb_Chr08g0242591 Lupinus albus HOM05D002920 ORTHO05D003118 2.5e-193 679.5 714 57.6
MELO3C011076.2 Cucumis melo HOM05D002920 ORTHO05D003118 3.6e-192 675.6 757 54.4
CsaV3_2G030160 Cucumis sativus L. HOM05D002920 ORTHO05D003118 2.0e-190 669.8 757 54.4
Eucgr.F00435 Eucalyptus grandis HOM05D002920 ORTHO05D003118 2.0e-190 669.8 745 55.2
Phvul.009G035200 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 1.7e-189 666.8 738 56.0
vmacro04641 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 4.9e-189 665.2 916 49.2
Ciclev10000004m.g Citrus clementina HOM05D002920 ORTHO05D003118 1.9e-188 663.3 750 56.8
Medtr3g099880 Medicago truncatula HOM05D002920 ORTHO05D003118 1.9e-188 663.3 741 55.3
ClCG08G011580 Citrullus lanatus HOM05D002920 ORTHO05D003118 2.4e-188 662.9 770 54.0
Manes.18G056500 Manihot esculenta HOM05D002920 ORTHO05D003118 3.2e-188 662.5 709 57.5
THA.LOC104823692 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 3.2e-188 662.5 724 55.2
Solyc12g088010.2 Solanum lycopersicum HOM05D002920 ORTHO05D003118 4.1e-188 662.1 717 57.3
Lj4C86G6 Lonicera japonica HOM05D002920 ORTHO05D003118 9.2e-188 661.0 741 55.5
EL10Ac1g00492 Beta vulgaris HOM05D002920 ORTHO05D003118 1.6e-187 660.2 770 54.7
Hund26821 Selenicereus undatus HOM05D002920 ORTHO05D003118 2.7e-187 659.4 732 55.5
MD08G1201800 Malus domestica HOM05D002920 ORTHO05D003118 3.5e-187 659.1 781 54.9
Sc26g0003000 Simmondsia chinensis HOM05D002920 ORTHO05D003118 4.6e-187 658.7 744 55.9
ECA247G2620 Erigeron canadensis HOM05D002920 ORTHO05D003118 1.0e-186 657.5 733 55.7
Duzib116G0095 Durio zibethinus HOM05D002920 ORTHO05D003118 2.3e-186 656.4 750 55.3
COL.COLO4_35270 Corchorus olitorius HOM05D002920 ORTHO05D003118 8.6e-186 654.4 746 55.2
TWI12G0386 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 2.5e-185 652.9 758 55.1
Sopen12g030040 Solanum pennellii HOM05D002920 ORTHO05D003118 1.2e-184 650.6 717 56.2
MBI16_g06013_MAGBIO Magnolia biondii HOM05D002920 ORTHO05D003118 1.6e-184 650.2 750 54.5
Sed0007128 Sechium edule HOM05D002920 ORTHO05D003118 4.7e-184 648.7 708 54.9
VMungo1309G0011 Vigna mungo HOM05D002920 ORTHO05D003118 4.7e-184 648.7 724 55.8
AL2G18260 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 8.1e-184 647.9 717 56.8
Gohir.A05G218800 Gossypium hirsutum HOM05D002920 ORTHO05D003118 8.1e-184 647.9 744 55.2
ATR0767G155 Amborella trichopoda HOM05D002920 ORTHO05D003118 6.8e-183 644.8 729 54.7
Carub.0002s0632 Capsella rubella HOM05D002920 ORTHO05D003118 8.9e-183 644.4 722 56.0
MD15G1388100 Malus domestica HOM05D002920 ORTHO05D003118 8.9e-183 644.4 781 53.4
CANSAT11G0038 Cannabis sativa HOM05D002920 ORTHO05D003118 1.5e-182 643.7 756 54.9
Gorai.009G228700 Gossypium raimondii HOM05D002920 ORTHO05D003118 2.0e-182 643.3 753 54.6
Thhalv10023209m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 3.4e-182 642.5 743 54.6
CARHR053740 Cardamine hirsuta HOM05D002920 ORTHO05D003118 7.5e-182 641.3 707 56.3
FvH4_5g34390 Fragaria vesca HOM05D002920 ORTHO05D003118 7.5e-182 641.3 758 55.1
arahy.Tifrunner.gnm1.ann1.WZJ2AS Arachis hypogaea HOM05D002920 ORTHO05D003118 1.3e-181 640.6 734 55.2
Gohir.D05G221500 Gossypium hirsutum HOM05D002920 ORTHO05D003118 2.9e-181 639.4 753 53.9
AT1G58250 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 3.7e-181 639.0 743 55.0
HanXRQChr02g0046051 Helianthus annuus HOM05D002920 ORTHO05D003118 1.1e-180 637.5 731 54.4
Potri.002G110700 Populus trichocarpa HOM05D002920 ORTHO05D003118 2.4e-180 636.3 719 55.8
Sabra02G0087200 Salix brachista HOM05D002920 ORTHO05D003118 5.4e-180 635.2 735 54.3
Sp2g05360 Schrenkiella parvula HOM05D002920 ORTHO05D003118 2.7e-179 632.9 743 53.8
Ah.05g171450 Amaranthus hybridus HOM05D002920 ORTHO05D003118 1.3e-178 630.6 744 53.8
FAN04G1888 Fragaria x ananassa HOM05D002920 ORTHO05D003118 2.3e-178 629.8 758 54.5
AUR62014366 Chenopodium quinoa HOM05D002920 ORTHO05D003118 3.0e-178 629.4 686 56.4
BraA09t37476Z Brassica rapa HOM05D002920 ORTHO05D003118 1.1e-177 627.5 741 53.8
Aa31LG2G10870 Aethionema arabicum HOM05D002920 ORTHO05D003118 1.9e-177 626.7 730 55.2
RcHm_v2.0_Chr7g0235041 Rosa chinensis HOM05D002920 ORTHO05D003118 1.9e-177 626.7 749 55.3
Duzib041G0528 Durio zibethinus HOM05D002920 ORTHO05D003118 2.5e-177 626.3 776 52.4
BcaC04g22122 Brassica carinata HOM05D002920 ORTHO05D003118 2.8e-176 622.9 744 53.8
C09p23100 Brassica napus HOM05D002920 ORTHO05D003118 2.8e-176 622.9 744 53.8
BolC9t55228H Brassica oleracea HOM05D002920 ORTHO05D003118 2.8e-176 622.9 744 53.8
PGR042G2097 Punica granatum HOM05D002920 ORTHO05D003118 3.6e-176 622.5 736 53.8
PSO170G4177 Papaver somniferum HOM05D002920 ORTHO05D003118 1.4e-175 620.5 735 53.9
FAN18G2688 Fragaria x ananassa HOM05D002920 ORTHO05D003118 5.2e-175 618.6 805 51.9
PSO210G5781 Papaver somniferum HOM05D002920 ORTHO05D003118 5.2e-175 618.6 696 55.9
A01p28350 Brassica napus HOM05D002920 ORTHO05D003118 4.4e-174 615.5 747 53.3
Nn7g36727 Nelumbo nucifera HOM05D002920 ORTHO05D003118 4.4e-174 615.5 752 51.7
Rhsim06G0070200 Rhododendron simsii HOM05D002920 ORTHO05D003118 1.7e-173 613.6 741 52.9
BcaB04g20194 Brassica carinata HOM05D002920 ORTHO05D003118 2.9e-173 612.8 745 52.5
BcaC09g49498 Brassica carinata HOM05D002920 ORTHO05D003118 3.7e-173 612.5 747 53.1
C01p35900 Brassica napus HOM05D002920 ORTHO05D003118 3.7e-173 612.5 747 53.1
BolC1t03549H Brassica oleracea HOM05D002920 ORTHO05D003118 3.7e-173 612.5 747 53.1
Cpa.g.sc21.36 Carica papaya HOM05D002920 ORTHO05D003118 1.3e-170 604.0 749 53.4
CDE07G0298 Ceratophyllum demersum HOM05D002920 ORTHO05D003118 1.7e-170 603.6 723 51.6
BraA01t02963Z Brassica rapa HOM05D002920 ORTHO05D003118 3.9e-170 602.4 790 50.9
QL09p018218 Quercus lobata HOM05D002920 ORTHO05D003118 3.1e-167 592.8 608 59.9
Medtr5g066650 Medicago truncatula HOM05D002920 ORTHO05D003118 5.2e-167 592.0 744 49.5
LjContig00408g0017356 Lotus japonicus HOM05D002920 ORTHO05D003118 5.8e-166 588.6 772 49.4
FAN13G0555 Fragaria x ananassa HOM05D002920 ORTHO05D003118 4.9e-165 585.5 866 47.0
Lsat_1_v5_gn_1_1961 Lactuca sativa HOM05D002920 ORTHO05D003118 3.2e-164 582.8 734 51.8
SalBow2G2368 Salvia bowleyana HOM05D002920 ORTHO05D003118 5.4e-164 582.0 961 43.0
unitig_578.g16182 Utricularia gibba HOM05D002920 ORTHO05D003118 7.1e-164 581.6 711 53.0
Sed0001865 Sechium edule HOM05D002920 ORTHO05D003118 7.8e-163 578.2 768 49.2
Lalb_Chr10g0102771 Lupinus albus HOM05D002920 ORTHO05D003118 1.7e-162 577.0 796 47.4
Manes.05G189400 Manihot esculenta HOM05D002920 ORTHO05D003118 3.0e-154 549.7 707 49.9
CSS0008058 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 6.6e-154 548.5 505 63.4
Glyma.02G215800 Glycine max HOM05D002920 ORTHO05D003118 2.1e-152 543.5 789 46.1
VMungo0647G0360 Vigna mungo HOM05D002920 ORTHO05D003118 2.1e-152 543.5 744 47.0
Gorai.009G279000 Gossypium raimondii HOM05D002920 ORTHO05D003118 2.8e-152 543.1 736 48.9
Gohir.D05G266900 Gossypium hirsutum HOM05D002920 ORTHO05D003118 1.4e-151 540.8 736 48.5
Gohir.A05G264400 Gossypium hirsutum HOM05D002920 ORTHO05D003118 2.4e-151 540.0 736 48.6
CARHR259160 Cardamine hirsuta HOM05D002920 ORTHO05D003118 8.4e-149 531.6 744 46.5
DCAR_032088 Daucus carota HOM05D002920 ORTHO05D003118 8.4e-149 531.6 699 48.9
Phvul.008G183000 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 1.1e-148 531.2 806 43.9
THA.LOC104817630 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 1.6e-147 527.3 743 46.4
Zm00001eb051870 Zea mays HOM05D002920 ORTHO05D003118 6.0e-147 525.4 723 47.7
ECA232G1296 Erigeron canadensis HOM05D002920 ORTHO05D003118 5.1e-146 522.3 725 46.1
Thhalv10000004m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 5.6e-145 518.8 731 46.1
TPR.G26343 Trifolium pratense HOM05D002920 ORTHO05D003118 7.4e-145 518.5 809 44.3
AL8G23560 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 2.8e-144 516.5 743 44.7
AT5G49680 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 2.8e-144 516.5 743 44.4
Aa31LG4G11400 Aethionema arabicum HOM05D002920 ORTHO05D003118 6.2e-144 515.4 733 45.4
Sp1g33860 Schrenkiella parvula HOM05D002920 ORTHO05D003118 1.1e-143 514.6 692 49.6
CARHR053650 Cardamine hirsuta HOM05D002920 ORTHO05D003118 4.0e-143 512.7 671 50.5
Carub.0008s0955 Capsella rubella HOM05D002920 ORTHO05D003118 2.0e-142 510.4 749 44.5
TPR.G30876 Trifolium pratense HOM05D002920 ORTHO05D003118 2.6e-142 510.0 778 45.0
Sp4g01560 Schrenkiella parvula HOM05D002920 ORTHO05D003118 2.2e-141 506.9 735 45.4
HPP92_018503 Vanilla planifolia HOM05D002920 ORTHO05D003118 7.1e-140 501.9 726 44.5
A04p17040 Brassica napus HOM05D002920 ORTHO05D003118 4.3e-137 492.7 723 45.8
BraA04t17332Z Brassica rapa HOM05D002920 ORTHO05D003118 9.6e-137 491.5 723 45.8
C04p51730 Brassica napus HOM05D002920 ORTHO05D003118 2.1e-136 490.3 723 45.4
BolC4t26752H Brassica oleracea HOM05D002920 ORTHO05D003118 2.1e-136 490.3 723 45.5
Lsat_1_v5_gn_9_80681 Lactuca sativa HOM05D002920 ORTHO05D003118 3.4e-134 483.0 718 44.6
arahy.Tifrunner.gnm1.ann1.LW385E Arachis hypogaea HOM05D002920 ORTHO05D003118 2.2e-133 480.3 785 43.7
arahy.Tifrunner.gnm1.ann1.GN9VME Arachis hypogaea HOM05D002920 ORTHO05D003118 2.9e-133 479.9 785 44.3
Zm00001eb394580 Zea mays HOM05D002920 ORTHO05D003118 2.7e-131 473.4 688 44.8
DCAR_024958 Daucus carota HOM05D002920 ORTHO05D003118 1.3e-130 471.1 557 54.6
Psat2g064120 Pisum sativum HOM05D002920 ORTHO05D003118 1.3e-130 471.1 507 55.6
FAN08G1437 Fragaria x ananassa HOM05D002920 ORTHO05D003118 4.3e-129 466.1 750 46.3
BraA08t32630Z Brassica rapa HOM05D002920 ORTHO05D003118 4.2e-116 422.9 651 45.0
Lsat_1_v5_gn_7_70960 Lactuca sativa HOM05D002920 ORTHO05D003118 5.5e-116 422.5 724 41.9
HanXRQChr14g0447811 Helianthus annuus HOM05D002920 ORTHO05D003118 4.7e-115 419.5 690 42.6
BcaC07g37279 Brassica carinata HOM05D002920 ORTHO05D003118 3.9e-114 416.4 647 45.1
C08p07060 Brassica napus HOM05D002920 ORTHO05D003118 6.7e-114 415.6 703 43.1
BolC8t47550H Brassica oleracea HOM05D002920 ORTHO05D003118 6.7e-114 415.6 703 43.1
A08p06260 Brassica napus HOM05D002920 ORTHO05D003118 9.1e-111 405.2 573 47.5
vmacro21353 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 3.2e-108 396.7 607 44.8
Hund17268 Selenicereus undatus HOM05D002920 ORTHO05D003118 2.3e-106 390.6 564 45.2
Ca_05459_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 1.3e-104 384.8 365 59.5
SMO116G0207 Selaginella moellendorffii HOM05D002920 ORTHO05D003118 2.5e-100 370.5 731 39.4
Pp3c12_12980 Physcomitrium patens HOM05D002920 ORTHO05D003118 7.2e-100 369.0 730 40.0
Os03g0353600 Oryza sativa ssp. japonica HOM05D002920 ORTHO05D003118 5.2e-90 336.3 531 43.3
Mapoly0099s0021 Marchantia polymorpha HOM05D002920 ORTHO05D003118 5.0e-85 319.7 726 36.8
AagrBONN_evm.TU.Sc2ySwM_344.1562 Anthoceros agrestis HOM05D002920 ORTHO05D003118 1.6e-78 298.1 622 38.1
Haze_22482 Corylus avellana HOM05D002920 ORTHO05D003118 1.0e-77 295.4 720 35.6
PGSC0003DMG400002051 Solanum tuberosum HOM05D002920 ORTHO05D003118 1.7e-72 278.1 200 73.0
AUR62019108 Chenopodium quinoa HOM05D002920 ORTHO05D003118 2.8e-67 260.8 401 46.1
HPP92_024863 Vanilla planifolia HOM05D002920 ORTHO05D003118 3.2e-63 247.3 376 44.1
SHI00996 Sapria himalayana HOM05D002920 ORTHO05D000014 3.5e-62 243.8 389 44.2
SEGI_17287 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 7.3e-52 209.5 407 38.6
Psat5g293160 Pisum sativum HOM05D001876 ORTHO05D002002 1.5e-44 185.3 129 76.0
Psat5g293120 Pisum sativum HOM05D001876 ORTHO05D002002 2.1e-43 181.4 129 75.2
Oeu038175.1 Olea europaea HOM05D002920 ORTHO05D010194 1.1e-42 179.1 231 51.9
SEGI_04147 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 2.4e-42 177.9 181 58.6
Hund17269 Selenicereus undatus HOM05D002920 ORTHO05D003118 2.9e-32 144.4 140 57.9
QL09p018203 Quercus lobata HOM05D002920 ORTHO05D003118 4.6e-30 137.1 117 69.2
MD08G1208300 Malus domestica HOM05D002920 ORTHO05D003118 1.3e-29 135.6 203 47.8
Psat2g064080 Pisum sativum HOM05D002920 ORTHO05D003118 2.9e-24 117.9 163 45.4
Ca_05461_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 2.5e-23 114.8 148 46.6
Oeu038176.1 Olea europaea HOM05D002920 ORTHO05D003118 3.9e-21 107.5 100 66.0
MD08G1208200 Malus domestica HOM05D002920 ORTHO05D003118 4.3e-20 104.0 158 44.9
Haze_22479 Corylus avellana HOM05D002920 ORTHO05D003118 5.7e-20 103.6 119 55.5
CANSAT80G1718 Cannabis sativa HOM05D002920 ORTHO05D003118 8.2e-19 99.8 54 83.3
CBR_g40338 Chara braunii HOM05D002920 ORTHO05D003118 2.1e-14 85.1 379 28.2
Psat7g143040 Pisum sativum HOM05D002920 ORTHO05D003118 1.0e-13 82.8 48 77.1
CBR_g40341 Chara braunii HOM05D002920 ORTHO05D003118 9.7e-12 76.3 205 29.8
SEGI_38853 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 6.3e-11 73.6 47 70.2
Actinidia28430 Actinidia chinensis HOM05D002920 ORTHO05D003118 6.1e-06 57.0 55 60.0


User provided reference genes

Program Settings