Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G375.36 Capsicum annuum HOM05D002920 ORTHO05D003118 1.5e-278 962.2 482 100.0
CAN.G193.3 Capsicum annuum HOM05D002920 ORTHO05D003118 6.3e-229 797.3 742 61.6
Solyc04g076540.4 Solanum lycopersicum HOM05D002920 ORTHO05D003118 1.4e-220 769.6 742 59.2
Sopen04g030270 Solanum pennellii HOM05D002920 ORTHO05D003118 2.2e-218 762.3 742 58.8
Peaxi162Scf01112g00017 Petunia axillaris HOM05D002920 ORTHO05D003118 1.8e-204 716.1 742 55.8
Nitab4.5_0005345g0040 Nicotiana tabacum HOM05D002920 ORTHO05D003118 2.0e-203 712.6 773 54.3
Peaxi162Scf00160g01034 Petunia axillaris HOM05D002920 ORTHO05D003118 6.4e-165 584.7 743 46.8
Nitab4.5_0000131g0060 Nicotiana tabacum HOM05D002920 ORTHO05D003118 1.9e-164 583.2 600 55.3
Sopen12g030040 Solanum pennellii HOM05D002920 ORTHO05D003118 3.9e-162 575.5 743 46.3
Solyc12g088010.2 Solanum lycopersicum HOM05D002920 ORTHO05D003118 1.1e-161 573.9 743 46.3
CAN.G1104.5 Capsicum annuum HOM05D002920 ORTHO05D003118 4.3e-161 572.0 739 46.3
Nitab4.5_0005065g0010 Nicotiana tabacum HOM05D002920 ORTHO05D003118 2.6e-158 562.8 728 47.1
Dinv44873 Davidia involucrata HOM05D002920 ORTHO05D003118 1.7e-157 560.1 746 45.4
Cc10_g08510 Coffea canephora HOM05D002920 ORTHO05D003118 3.6e-152 542.3 744 43.8
MSTRG.24431 Avicennia marina HOM05D002920 ORTHO05D003118 1.4e-151 540.4 744 44.9
CSS0043684 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 2.9e-149 532.7 743 44.5
Migut.N02861 Erythranthe guttata HOM05D002920 ORTHO05D003118 3.2e-148 529.3 743 44.0
Actinidia19621 Actinidia chinensis HOM05D002920 ORTHO05D003118 5.4e-148 528.5 706 45.5
SalBow2G2368 Salvia bowleyana HOM05D002920 ORTHO05D003118 7.9e-147 524.6 742 43.7
vmacro04641 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 1.3e-144 517.3 746 42.5
Manes.18G056500 Manihot esculenta HOM05D002920 ORTHO05D003118 1.6e-144 516.9 742 43.3
SGA_v2.0_scaffold235G43665 Striga asiatica HOM05D002920 ORTHO05D003118 6.2e-144 515.0 745 43.4
Atru.chr13.989 Acer truncatum HOM05D002920 ORTHO05D003118 2.2e-141 506.5 744 41.9
Gohir.D05G221500 Gossypium hirsutum HOM05D002920 ORTHO05D003118 1.4e-140 503.8 743 43.1
Haze_22482 Corylus avellana HOM05D002920 ORTHO05D003118 7.1e-140 501.5 744 41.8
Gorai.009G228700 Gossypium raimondii HOM05D002920 ORTHO05D003118 1.6e-139 500.4 743 43.2
TWI12G0386 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 2.1e-139 500.0 738 42.4
Rhsim07G0212900 Rhododendron simsii HOM05D002920 ORTHO05D003118 3.5e-139 499.2 746 41.8
Ciclev10000004m.g Citrus clementina HOM05D002920 ORTHO05D003118 4.6e-139 498.8 743 41.6
Cfa013811 Carpinus fangiana HOM05D002920 ORTHO05D003118 7.9e-139 498.0 743 41.7
Gohir.A05G218800 Gossypium hirsutum HOM05D002920 ORTHO05D003118 3.9e-138 495.7 738 43.1
Hund26821 Selenicereus undatus HOM05D002920 ORTHO05D003118 4.3e-137 492.3 722 41.4
Duzib041G0528 Durio zibethinus HOM05D002920 ORTHO05D003118 7.4e-137 491.5 743 42.3
Sabra02G0087200 Salix brachista HOM05D002920 ORTHO05D003118 3.7e-136 489.2 740 41.8
AUR62019108 Chenopodium quinoa HOM05D002920 ORTHO05D003118 6.2e-136 488.4 730 41.1
COL.COLO4_35270 Corchorus olitorius HOM05D002920 ORTHO05D003118 6.2e-136 488.4 738 42.7
Duzib116G0095 Durio zibethinus HOM05D002920 ORTHO05D003118 6.2e-136 488.4 738 42.0
QL09p018218 Quercus lobata HOM05D002920 ORTHO05D003118 1.1e-135 487.6 741 41.3
DCAR_032088 Daucus carota HOM05D002920 ORTHO05D003118 1.8e-135 486.9 738 40.5
TWI56G0278 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 2.4e-135 486.5 738 41.3
Potri.002G110700 Populus trichocarpa HOM05D002920 ORTHO05D003118 3.1e-135 486.1 740 41.6
GSVIVG01009199001 Vitis vinifera HOM05D002920 ORTHO05D003118 5.3e-135 485.3 668 43.3
MD08G1201800 Malus domestica HOM05D002920 ORTHO05D003118 1.2e-134 484.2 740 40.4
Glyma.06G098300 Glycine max HOM05D002920 ORTHO05D003118 1.5e-134 483.8 744 41.7
Lj4C86G6 Lonicera japonica HOM05D002920 ORTHO05D003118 2.0e-134 483.4 737 41.5
Thecc.08G073100 Theobroma cacao HOM05D002920 ORTHO05D003118 2.6e-134 483.0 743 42.0
Rhsim06G0070200 Rhododendron simsii HOM05D002920 ORTHO05D003118 2.2e-133 479.9 740 40.5
RcHm_v2.0_Chr7g0235041 Rosa chinensis HOM05D002920 ORTHO05D003118 3.8e-133 479.2 741 40.6
AUR62014366 Chenopodium quinoa HOM05D002920 ORTHO05D003118 6.5e-133 478.4 730 40.7
DCAR_024958 Daucus carota HOM05D002920 ORTHO05D003118 1.1e-132 477.6 720 42.6
VMungo1309G0011 Vigna mungo HOM05D002920 ORTHO05D003118 1.1e-132 477.6 740 41.2
FAN04G1888 Fragaria x ananassa HOM05D002920 ORTHO05D003118 1.4e-132 477.2 742 39.9
FAN08G1437 Fragaria x ananassa HOM05D002920 ORTHO05D003118 1.4e-132 477.2 742 39.8
CiPaw.07G163600 Carya illinoinensis HOM05D002920 ORTHO05D003118 1.9e-132 476.9 739 41.0
FvH4_5g34390 Fragaria vesca HOM05D002920 ORTHO05D003118 1.9e-132 476.9 742 39.8
Prupe.1G535700 Prunus persica HOM05D002920 ORTHO05D003118 1.9e-132 476.9 742 40.3
PGR042G2097 Punica granatum HOM05D002920 ORTHO05D003118 2.5e-132 476.5 743 40.6
Medtr3g099880 Medicago truncatula HOM05D002920 ORTHO05D003118 3.2e-132 476.1 744 41.3
Phvul.009G035200 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 4.2e-132 475.7 736 41.0
Sc26g0003000 Simmondsia chinensis HOM05D002920 ORTHO05D003118 4.2e-132 475.7 714 41.6
TAR381G0245 Trochodendron aralioides HOM05D002920 ORTHO05D003118 4.2e-132 475.7 754 40.2
Ca_16019_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 5.5e-132 475.3 743 41.2
Eucgr.F00435 Eucalyptus grandis HOM05D002920 ORTHO05D003118 9.3e-132 474.6 742 40.2
Lalb_Chr08g0242591 Lupinus albus HOM05D002920 ORTHO05D003118 9.3e-132 474.6 743 40.8
CANSAT11G0038 Cannabis sativa HOM05D002920 ORTHO05D003118 1.6e-131 473.8 731 40.9
Glyma.04G096600 Glycine max HOM05D002920 ORTHO05D003118 2.1e-131 473.4 743 40.9
ECA247G2620 Erigeron canadensis HOM05D002920 ORTHO05D003118 3.5e-131 472.6 725 41.7
TPR.G6371 Trifolium pratense HOM05D002920 ORTHO05D003118 1.8e-130 470.3 739 40.9
THA.LOC104823692 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 2.3e-130 469.9 740 41.6
TAR625G0757 Trochodendron aralioides HOM05D002920 ORTHO05D003118 2.3e-130 469.9 757 40.3
FAN18G2688 Fragaria x ananassa HOM05D002920 ORTHO05D003118 1.1e-129 467.6 767 38.5
ClCG08G011580 Citrullus lanatus HOM05D002920 ORTHO05D003118 1.5e-129 467.2 724 40.6
Aqoxy5G01357 Aquilegia oxysepala HOM05D002920 ORTHO05D003118 3.3e-129 466.1 746 40.2
MELO3C011076.2 Cucumis melo HOM05D002920 ORTHO05D003118 4.3e-129 465.7 724 40.7
MD15G1388100 Malus domestica HOM05D002920 ORTHO05D003118 5.7e-129 465.3 740 40.4
Lj1g0004035 Lotus japonicus HOM05D002920 ORTHO05D003118 1.6e-128 463.8 744 40.7
Ah.05g171450 Amaranthus hybridus HOM05D002920 ORTHO05D003118 2.2e-128 463.4 730 39.2
unitig_578.g16182 Utricularia gibba HOM05D002920 ORTHO05D003118 2.2e-128 463.4 733 41.3
arahy.Tifrunner.gnm1.ann1.WZJ2AS Arachis hypogaea HOM05D002920 ORTHO05D003118 2.8e-128 463.0 746 39.7
BcaC04g22122 Brassica carinata HOM05D002920 ORTHO05D003118 2.8e-128 463.0 731 41.2
Lalb_Chr10g0102771 Lupinus albus HOM05D002920 ORTHO05D003118 2.8e-128 463.0 745 39.9
CsaV3_2G030160 Cucumis sativus L. HOM05D002920 ORTHO05D003118 6.3e-128 461.8 724 39.9
HanXRQChr02g0046051 Helianthus annuus HOM05D002920 ORTHO05D003118 8.2e-128 461.5 729 40.5
arahy.Tifrunner.gnm1.ann1.3DHU48 Arachis hypogaea HOM05D002920 ORTHO05D003118 1.1e-127 461.1 746 39.8
Psat5g047200 Pisum sativum HOM05D002920 ORTHO05D003118 1.1e-127 461.1 743 39.7
C09p23100 Brassica napus HOM05D002920 ORTHO05D003118 6.9e-127 458.4 731 41.0
BolC9t55228H Brassica oleracea HOM05D002920 ORTHO05D003118 6.9e-127 458.4 731 41.0
CARHR053740 Cardamine hirsuta HOM05D002920 ORTHO05D003118 1.2e-126 457.6 740 40.4
A01p28350 Brassica napus HOM05D002920 ORTHO05D003118 1.5e-126 457.2 732 40.3
BraA01t02963Z Brassica rapa HOM05D002920 ORTHO05D003118 1.5e-126 457.2 732 40.3
BraA09t37476Z Brassica rapa HOM05D002920 ORTHO05D003118 1.5e-126 457.2 731 40.9
Cpa.g.sc21.37 Carica papaya HOM05D002920 ORTHO05D003118 2.6e-126 456.4 563 47.2
Aa31LG2G10870 Aethionema arabicum HOM05D002920 ORTHO05D003118 5.9e-126 455.3 739 39.9
EL10Ac1g00492 Beta vulgaris HOM05D002920 ORTHO05D003118 1.0e-125 454.5 736 39.1
MBI16_g06013_MAGBIO Magnolia biondii HOM05D002920 ORTHO05D003118 1.7e-125 453.8 745 39.3
Manes.05G189400 Manihot esculenta HOM05D002920 ORTHO05D003118 1.7e-125 453.8 729 40.1
BcaB04g20194 Brassica carinata HOM05D002920 ORTHO05D003118 2.9e-125 453.0 731 40.2
BcaC09g49498 Brassica carinata HOM05D002920 ORTHO05D003118 1.1e-124 451.1 732 40.3
Sed0007128 Sechium edule HOM05D002920 ORTHO05D003118 1.1e-124 451.1 723 39.4
BolC1t03549H Brassica oleracea HOM05D002920 ORTHO05D003118 1.9e-124 450.3 732 40.2
LjContig00408g0017356 Lotus japonicus HOM05D002920 ORTHO05D003118 1.9e-124 450.3 744 39.0
AL2G18260 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 3.2e-124 449.5 740 40.3
Thhalv10023209m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 4.2e-124 449.1 731 39.8
Nn1g05621 Nelumbo nucifera HOM05D002920 ORTHO05D003118 5.5e-124 448.7 756 38.1
Psat2g064080 Pisum sativum HOM05D002920 ORTHO05D003118 7.2e-124 448.4 745 39.2
Glyma.02G215800 Glycine max HOM05D002920 ORTHO05D003118 9.4e-124 448.0 738 40.0
Nitab4.5_0000354g0140 Nicotiana tabacum HOM05D002920 ORTHO05D003118 9.4e-124 448.0 676 43.8
PSO210G5781 Papaver somniferum HOM05D002920 ORTHO05D003118 9.4e-124 448.0 736 36.8
Ca_05461_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 1.2e-123 447.6 763 38.7
Carub.0002s0632 Capsella rubella HOM05D002920 ORTHO05D003118 1.6e-123 447.2 740 39.9
Medtr5g066650 Medicago truncatula HOM05D002920 ORTHO05D003118 2.7e-123 446.4 735 39.7
AT1G58250 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 4.6e-123 445.7 739 39.8
PSO170G4177 Papaver somniferum HOM05D002920 ORTHO05D003118 4.6e-123 445.7 736 37.0
Lsat_1_v5_gn_1_1961 Lactuca sativa HOM05D002920 ORTHO05D003118 1.8e-122 443.7 724 39.5
Sed0001865 Sechium edule HOM05D002920 ORTHO05D003118 3.0e-122 443.0 722 39.1
HanXRQChr14g0447811 Helianthus annuus HOM05D002920 ORTHO05D003118 1.3e-120 437.6 696 40.9
TPR.G26343 Trifolium pratense HOM05D002920 ORTHO05D003118 6.3e-120 435.3 730 38.9
Sp2g05360 Schrenkiella parvula HOM05D002920 ORTHO05D003118 8.2e-120 434.9 732 39.5
Sp4g01560 Schrenkiella parvula HOM05D002920 ORTHO05D003118 4.1e-119 432.6 721 39.4
Nn7g36727 Nelumbo nucifera HOM05D002920 ORTHO05D003118 9.1e-119 431.4 757 37.0
TPR.G30876 Trifolium pratense HOM05D002920 ORTHO05D003118 1.2e-118 431.0 731 38.6
Hund17268 Selenicereus undatus HOM05D002920 ORTHO05D003118 2.5e-116 423.3 761 35.6
ECA232G1296 Erigeron canadensis HOM05D002920 ORTHO05D003118 4.2e-116 422.5 708 38.0
Thhalv10000004m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 1.8e-114 417.2 705 39.0
VMungo0647G0360 Vigna mungo HOM05D002920 ORTHO05D003118 5.1e-114 415.6 728 37.5
Phvul.008G183000 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 3.3e-113 412.9 726 37.5
AT5G49680 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 7.4e-113 411.8 730 37.9
A04p17040 Brassica napus HOM05D002920 ORTHO05D003118 9.7e-113 411.4 712 38.5
BraA04t17332Z Brassica rapa HOM05D002920 ORTHO05D003118 9.7e-113 411.4 712 38.3
AL8G23560 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 1.7e-112 410.6 725 38.2
Carub.0008s0955 Capsella rubella HOM05D002920 ORTHO05D003118 2.8e-112 409.8 728 38.5
C04p51730 Brassica napus HOM05D002920 ORTHO05D003118 4.8e-112 409.1 714 37.8
THA.LOC104817630 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 4.8e-112 409.1 562 44.1
arahy.Tifrunner.gnm1.ann1.GN9VME Arachis hypogaea HOM05D002920 ORTHO05D003118 3.1e-111 406.4 730 37.0
Lsat_1_v5_gn_7_70960 Lactuca sativa HOM05D002920 ORTHO05D003118 4.1e-111 406.0 708 38.6
Gohir.A05G264400 Gossypium hirsutum HOM05D002920 ORTHO05D003118 1.5e-110 404.1 564 42.7
BolC4t26752H Brassica oleracea HOM05D002920 ORTHO05D003118 2.0e-110 403.7 553 43.9
Gohir.D05G266900 Gossypium hirsutum HOM05D002920 ORTHO05D003118 4.5e-110 402.5 564 42.6
arahy.Tifrunner.gnm1.ann1.LW385E Arachis hypogaea HOM05D002920 ORTHO05D003118 7.7e-110 401.7 730 36.7
Gorai.009G279000 Gossypium raimondii HOM05D002920 ORTHO05D003118 1.0e-109 401.4 564 42.4
Zm00001eb051870 Zea mays HOM05D002920 ORTHO05D003118 1.1e-105 387.9 739 34.6
ATR0767G155 Amborella trichopoda HOM05D002920 ORTHO05D003118 7.4e-105 385.2 744 34.9
CARHR259160 Cardamine hirsuta HOM05D002920 ORTHO05D003118 7.4e-105 385.2 686 37.2
Aa31LG4G11400 Aethionema arabicum HOM05D002920 ORTHO05D003118 1.1e-103 381.3 714 37.1
HPP92_018503 Vanilla planifolia HOM05D002920 ORTHO05D003118 2.3e-98 363.6 749 34.3
Sp1g33860 Schrenkiella parvula HOM05D002920 ORTHO05D003118 1.1e-95 354.8 687 37.0
HPP92_024863 Vanilla planifolia HOM05D002920 ORTHO05D003118 3.1e-95 353.2 752 33.0
SEGI_17287 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 5.4e-87 325.9 787 30.0
BraA08t32630Z Brassica rapa HOM05D002920 ORTHO05D003118 3.5e-86 323.2 640 36.6
C01p35910 Brassica napus HOM05D002920 ORTHO05D003118 2.5e-84 317.0 329 52.9
Zm00001eb394580 Zea mays HOM05D002920 ORTHO05D003118 1.2e-83 314.7 564 36.3
Lsat_1_v5_gn_9_80701 Lactuca sativa HOM05D002920 ORTHO05D003118 1.5e-81 307.8 330 51.8
CARHR053650 Cardamine hirsuta HOM05D002920 ORTHO05D003118 3.4e-73 280.0 636 33.8
A08p06260 Brassica napus HOM05D002920 ORTHO05D003118 2.9e-72 276.9 617 34.8
BcaC07g37279 Brassica carinata HOM05D002920 ORTHO05D003118 3.0e-69 266.9 608 34.4
SHI00997 Sapria himalayana HOM05D002920 ORTHO05D003118 1.3e-64 251.5 343 42.3
SMO116G0207 Selaginella moellendorffii HOM05D002920 ORTHO05D003118 3.2e-55 220.3 728 26.8
Pp3c12_12980 Physcomitrium patens HOM05D002920 ORTHO05D003118 2.4e-50 204.1 582 27.0
C08p07060 Brassica napus HOM05D002920 ORTHO05D003118 2.3e-45 187.6 541 31.2
BolC8t47550H Brassica oleracea HOM05D002920 ORTHO05D003118 2.3e-45 187.6 541 31.2
AagrBONN_evm.TU.Sc2ySwM_344.1562 Anthoceros agrestis HOM05D002920 ORTHO05D003118 1.5e-44 184.9 568 25.9
FAN13G0555 Fragaria x ananassa HOM05D002920 ORTHO05D003118 3.1e-42 177.2 302 35.8
vmacro21353 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 3.8e-40 170.2 303 35.3
Lsat_1_v5_gn_9_80681 Lactuca sativa HOM05D002920 ORTHO05D003118 7.1e-39 166.0 277 38.6
C01p35900 Brassica napus HOM05D002920 ORTHO05D003118 1.6e-38 164.9 293 38.6
Mapoly0099s0021 Marchantia polymorpha HOM05D002920 ORTHO05D003118 1.1e-34 152.1 450 28.0
SHI00996 Sapria himalayana HOM05D002920 ORTHO05D000014 6.9e-34 149.4 289 33.2
CDE07G0298 Ceratophyllum demersum HOM05D002920 ORTHO05D003118 9.9e-33 145.6 278 34.2
CBR_g40338 Chara braunii HOM05D002920 ORTHO05D003118 3.4e-25 120.6 588 23.1
MD08G1202300 Malus domestica HOM05D002531 ORTHO05D003118 9.3e-23 112.5 154 41.6
A09p18500 Brassica napus HOM05D002920 ORTHO05D003118 4.6e-22 110.2 159 45.9


User provided reference genes

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