Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 1.5e-40 169.1 86 100.0
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 2.7e-34 148.3 96 84.4
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 1.1e-32 142.9 110 73.6
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 5.7e-32 140.6 107 72.0
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 1.7e-31 139.0 127 65.4
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 1.7e-31 139.0 127 65.4
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 4.8e-31 137.5 127 64.6
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 2.6e-29 131.7 124 60.5
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 1.0e-28 129.8 123 59.3
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 1.3e-28 129.4 123 57.7
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 1.3e-28 129.4 123 58.5
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 2.9e-28 128.3 127 59.8
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 3.8e-28 127.9 123 57.7
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 6.5e-28 127.1 123 57.7
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 8.5e-28 126.7 124 58.1
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 8.5e-28 126.7 121 59.5
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.1e-27 126.3 122 58.2
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 1.9e-27 125.6 121 58.7
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 1.9e-27 125.6 123 56.1
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 2.5e-27 125.2 123 57.7
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 2.5e-27 125.2 123 57.7
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 2.5e-27 125.2 123 57.7
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 2.5e-27 125.2 123 57.7
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 2.5e-27 125.2 123 57.7
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 2.5e-27 125.2 123 57.7
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 4.2e-27 124.4 123 56.9
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 4.2e-27 124.4 122 56.6
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 4.2e-27 124.4 123 56.1
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 4.2e-27 124.4 123 56.9
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 7.2e-27 123.6 126 55.6
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 7.2e-27 123.6 122 58.2
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 7.2e-27 123.6 127 58.3
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 9.4e-27 123.2 124 57.3
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 9.4e-27 123.2 124 57.3
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 9.4e-27 123.2 123 56.9
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 1.2e-26 122.9 124 56.5
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 1.2e-26 122.9 123 56.9
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.2e-26 122.9 123 55.3
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 1.2e-26 122.9 123 57.7
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 1.6e-26 122.5 122 54.9
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 1.6e-26 122.5 123 57.7
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 2.1e-26 122.1 127 55.9
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 2.1e-26 122.1 127 55.9
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 2.1e-26 122.1 124 56.5
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 2.1e-26 122.1 123 56.1
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 2.1e-26 122.1 123 56.1
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.1e-26 122.1 121 55.4
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 2.7e-26 121.7 123 56.1
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 2.7e-26 121.7 121 57.0
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.7e-26 121.7 123 55.3
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 2.7e-26 121.7 123 55.3
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 3.6e-26 121.3 123 55.3
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 3.6e-26 121.3 123 56.1
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 3.6e-26 121.3 120 55.8
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 3.6e-26 121.3 123 54.5
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 6.1e-26 120.6 122 54.9
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 6.1e-26 120.6 122 54.9
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 6.1e-26 120.6 123 54.5
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 6.1e-26 120.6 121 57.0
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 8.0e-26 120.2 123 55.3
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 8.0e-26 120.2 123 55.3
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 1.0e-25 119.8 124 54.8
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 1.0e-25 119.8 127 53.5
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 1.4e-25 119.4 123 55.3
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 1.8e-25 119.0 124 54.8
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 1.8e-25 119.0 123 54.5
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 2.3e-25 118.6 123 54.5
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 2.3e-25 118.6 124 54.8
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 3.0e-25 118.2 119 56.3
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 3.0e-25 118.2 123 55.3
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 4.0e-25 117.9 122 54.9
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 4.0e-25 117.9 127 51.2
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 4.0e-25 117.9 127 52.0
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 6.7e-25 117.1 123 54.5
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 6.7e-25 117.1 124 53.2
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 6.7e-25 117.1 121 55.4
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 8.8e-25 116.7 119 54.6
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 1.2e-24 116.3 137 51.8
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 1.5e-24 115.9 127 54.3
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 2.0e-24 115.5 157 45.9
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 2.6e-24 115.2 122 53.3
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 2.6e-24 115.2 124 52.4
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 2.6e-24 115.2 123 52.8
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 3.3e-24 114.8 116 55.2
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 4.4e-24 114.4 121 52.9
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 4.4e-24 114.4 122 53.3
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 4.4e-24 114.4 127 53.5
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 5.7e-24 114.0 120 53.3
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 5.7e-24 114.0 120 53.3
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 5.7e-24 114.0 124 53.2
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 7.5e-24 113.6 127 52.8
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 7.5e-24 113.6 123 52.0
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 7.5e-24 113.6 127 53.5
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 9.7e-24 113.2 123 53.7
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 9.7e-24 113.2 123 52.8
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 1.3e-23 112.8 123 52.8
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 1.3e-23 112.8 123 51.2
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 1.7e-23 112.5 127 48.8
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.7e-23 112.5 122 52.5
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 2.2e-23 112.1 120 51.7
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 2.8e-23 111.7 123 52.0
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 3.7e-23 111.3 123 52.8
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 6.3e-23 110.5 133 47.4
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 6.3e-23 110.5 121 51.2
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 6.3e-23 110.5 122 50.8
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 1.4e-22 109.4 127 49.6
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 1.4e-22 109.4 110 56.4
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 9.1e-22 106.7 124 47.6
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 1.2e-21 106.3 120 49.2
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 2.0e-21 105.5 123 49.6
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 2.0e-21 105.5 112 51.8
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 7.7e-21 103.6 101 56.4
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 1.0e-20 103.2 122 48.4
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 1.7e-20 102.4 120 47.5
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 1.7e-20 102.4 126 46.8
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 2.9e-20 101.7 125 47.2
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 3.8e-20 101.3 119 49.6
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.1e-19 99.8 84 63.1
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 1.1e-19 99.8 120 45.0
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 1.5e-19 99.4 123 46.3
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 4.2e-19 97.8 123 44.7
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 1.8e-17 92.4 123 44.7
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 2.3e-17 92.0 123 44.7
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.2e-16 89.7 121 45.5
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 2.2e-15 85.5 80 58.8
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 2.2e-15 85.5 121 43.8
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 3.7e-15 84.7 42 95.2
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 8.3e-15 83.6 45 93.3
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 8.3e-15 83.6 42 92.9
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 2.4e-14 82.0 119 37.0
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 4.1e-14 81.3 42 90.5
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 2.7e-13 78.6 83 55.4
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 3.5e-13 78.2 42 85.7
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 1.7e-12 75.9 40 85.0
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 2.9e-12 75.1 123 35.8
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 2.9e-12 75.1 110 41.8
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 3.8e-12 74.7 110 42.7
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 3.8e-12 74.7 73 54.8
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 5.0e-12 74.3 42 88.1
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 9.5e-11 70.1 95 46.3
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 4.7e-10 67.8 103 40.8
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 7.5e-08 60.5 37 78.4
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 1.4e-06 56.2 83 43.4


User provided reference genes

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