Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 3.8e-109 398.3 215 100.0
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.6e-86 323.2 213 83.6
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 2.5e-84 315.8 211 83.9
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.7e-80 303.1 212 79.7
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 4.0e-74 282.0 212 73.6
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.7e-69 266.5 212 69.3
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 6.5e-69 264.6 212 71.7
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 4.7e-67 258.5 210 71.0
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 1.2e-65 253.8 193 74.1
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.2e-65 253.8 212 68.4
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 1.7e-64 250.0 214 68.7
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.8e-63 246.5 212 67.0
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 1.8e-63 246.5 212 67.0
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.6e-62 243.4 212 66.0
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 5.0e-61 238.4 214 65.9
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 1.9e-60 236.5 212 65.1
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 4.3e-60 235.3 213 66.7
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 5.6e-60 235.0 216 64.4
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 5.6e-60 235.0 212 63.7
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 7.3e-60 234.6 215 65.1
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 2.8e-59 232.6 215 64.7
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 3.6e-59 232.3 215 63.7
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 4.7e-59 231.9 217 62.2
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 4.0e-58 228.8 213 62.0
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.5e-57 226.9 215 62.8
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.5e-57 226.9 214 61.7
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 3.4e-57 225.7 215 62.8
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 4.4e-57 225.3 212 61.8
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 5.7e-57 224.9 227 61.2
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 5.7e-57 224.9 221 60.2
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 9.8e-57 224.2 214 64.0
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.9e-56 222.6 230 56.5
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 2.9e-56 222.6 212 61.8
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 6.4e-56 221.5 212 59.4
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 8.3e-56 221.1 216 62.5
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 1.4e-55 220.3 217 60.4
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 3.2e-55 219.2 214 63.1
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 3.2e-55 219.2 221 59.7
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 3.2e-55 219.2 221 59.7
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 7.0e-55 218.0 223 58.7
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 9.2e-55 217.6 230 58.3
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.2e-54 217.2 212 59.9
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 1.2e-54 217.2 212 61.8
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.0e-54 216.5 230 58.3
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 2.0e-54 216.5 212 59.4
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 2.7e-54 216.1 213 62.0
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 3.5e-54 215.7 231 59.3
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 4.6e-54 215.3 230 58.7
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 4.6e-54 215.3 230 58.7
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 5.9e-54 214.9 226 57.1
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 1.7e-53 213.4 236 57.2
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.3e-53 213.0 126 84.1
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.9e-53 212.2 230 58.3
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 5.0e-53 211.8 229 57.6
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 8.6e-53 211.1 214 56.5
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 1.1e-52 210.7 235 57.0
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.1e-52 210.7 235 57.0
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 1.5e-52 210.3 213 60.1
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.9e-52 209.9 169 72.2
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 2.5e-52 209.5 224 57.6
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 4.3e-52 208.8 209 59.8
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 7.3e-52 208.0 219 60.7
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 9.5e-52 207.6 227 57.7
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 9.5e-52 207.6 224 59.8
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 1.2e-51 207.2 204 61.3
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 2.8e-51 206.1 213 58.2
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 2.8e-51 206.1 234 55.6
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 3.6e-51 205.7 126 79.4
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 8.0e-51 204.5 212 59.4
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 8.0e-51 204.5 223 57.0
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 3.1e-50 202.6 126 81.7
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 4.0e-50 202.2 127 78.0
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 6.8e-50 201.4 126 78.6
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 8.9e-50 201.1 212 59.4
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 1.2e-49 200.7 264 52.3
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 1.5e-49 200.3 215 57.2
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 4.4e-49 198.7 211 58.8
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 5.8e-49 198.4 212 57.5
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 9.8e-49 197.6 218 55.5
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 1.3e-48 197.2 120 79.2
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 1.3e-48 197.2 127 75.6
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.7e-48 196.8 230 53.9
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 1.7e-48 196.8 211 58.8
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 3.7e-48 195.7 213 53.1
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.9e-47 193.4 239 51.0
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 1.9e-47 193.4 212 56.6
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 2.4e-47 193.0 228 53.1
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 2.4e-47 193.0 235 50.6
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 9.2e-47 191.0 218 56.9
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 2.0e-46 189.9 211 55.5
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 4.6e-46 188.7 212 57.1
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.6e-46 188.7 232 50.0
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 6.0e-46 188.3 235 49.8
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 6.0e-46 188.3 212 56.1
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 6.0e-46 188.3 127 74.8
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 7.8e-46 188.0 215 54.9
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 7.8e-46 188.0 214 54.7
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 3.9e-45 185.7 213 53.5
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 3.9e-45 185.7 212 54.2
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 5.0e-45 185.3 248 50.0
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 8.6e-45 184.5 212 54.2
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 2.5e-44 183.0 213 54.5
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 3.3e-44 182.6 213 54.0
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 3.3e-44 182.6 217 53.5
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 4.3e-44 182.2 199 57.3
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 4.3e-44 182.2 201 56.7
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 7.3e-44 181.4 211 53.1
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 7.3e-44 181.4 211 52.6
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 6.2e-43 178.3 222 51.4
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 4.0e-42 175.6 207 52.2
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 6.8e-42 174.9 106 84.0
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 8.9e-42 174.5 105 82.9
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.2e-41 174.1 196 57.7
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 5.8e-41 171.8 213 51.2
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 7.5e-41 171.4 218 49.5
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.3e-40 170.6 205 51.7
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.3e-40 170.6 222 50.5
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 1.7e-40 170.2 104 81.7
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 1.7e-40 170.2 219 52.1
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 3.9e-37 159.1 125 66.4
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 7.3e-36 154.8 95 75.8
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 9.5e-36 154.5 165 52.7
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.6e-35 153.7 136 66.9
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 4.7e-35 152.1 126 59.5
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 1.4e-34 150.6 201 49.8
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 1.8e-34 150.2 200 48.5
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 1.8e-34 150.2 200 48.5
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 3.1e-34 149.4 101 75.2
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 2.0e-33 146.7 196 53.1
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 2.6e-33 146.4 185 51.4
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 4.4e-33 145.6 131 61.8
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.4e-33 145.6 109 69.7
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 4.4e-33 145.6 170 57.6
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 7.6e-33 144.8 215 46.0
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 4.9e-32 142.1 108 64.8
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 5.4e-31 138.7 212 44.3
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 2.7e-30 136.3 133 57.9
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 4.6e-30 135.6 214 45.8
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.5e-28 130.6 204 43.6
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 1.9e-28 130.2 222 44.1
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 7.3e-28 128.3 224 43.8
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 2.1e-27 126.7 84 76.2
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 4.7e-27 125.6 125 55.2
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 4.7e-27 125.6 103 57.3
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 1.5e-25 120.6 137 55.5
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 4.2e-23 112.5 181 45.3
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 6.6e-21 105.1 79 69.6
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.1e-20 104.4 82 67.1
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 1.9e-20 103.6 146 49.3
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 8.1e-19 98.2 167 44.9
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 4.6e-14 82.4 48 77.1
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 6.7e-13 78.6 65 60.0
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 4.3e-12 75.9 99 40.4
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 2.8e-11 73.2 108 48.1
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 8.1e-11 71.6 104 37.5
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 5.3e-10 68.9 93 46.2
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 5.8e-09 65.5 107 45.8
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 2.9e-08 63.2 41 65.9
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 3.8e-08 62.8 150 38.0
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 2.4e-07 60.1 37 70.3
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 9.3e-07 58.2 45 66.7
Solyc05g016715.1 Solanum lycopersicum HOM05D001240 ORTHO05D037679 1.6e-06 57.4 107 43.9
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 2.7e-06 56.6 108 42.6


User provided reference genes

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