Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1650.2 870 100.0
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1503.8 876 88.7
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1499.2 900 87.1
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1496.1 876 88.2
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1491.5 900 87.2
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1442.9 824 89.1
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1425.2 1026 75.6
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1398.6 877 82.7
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1364.0 879 80.2
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1348.6 879 80.5
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1308.9 834 81.1
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1305.0 883 77.5
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1256.9 881 74.8
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1255.0 887 72.8
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1248.4 885 73.7
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1246.1 877 73.7
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1238.4 889 73.1
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1233.4 883 73.2
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1230.3 863 73.7
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1213.0 886 71.2
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1211.1 882 71.5
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1210.3 915 70.3
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1209.9 874 73.0
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1207.6 885 71.4
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1198.7 881 71.9
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1198.0 880 70.7
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1196.0 884 71.5
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1193.7 898 70.8
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1191.8 880 70.3
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1190.6 884 71.4
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1190.6 876 74.9
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1190.6 881 71.6
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1187.2 883 70.2
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1185.6 843 72.0
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1185.2 880 69.8
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1183.3 881 70.0
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1182.2 877 70.5
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1179.9 879 70.9
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1178.3 890 69.7
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1177.5 878 69.5
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1177.2 876 72.1
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1176.0 881 70.9
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1175.6 901 68.9
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1175.2 885 69.5
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1174.8 877 69.3
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1174.5 884 69.2
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1171.0 893 69.5
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1170.2 898 70.6
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1166.4 891 68.8
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1164.8 869 69.7
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1162.5 901 68.5
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1162.5 879 68.5
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1162.1 897 68.8
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1161.4 877 71.2
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1161.0 882 69.0
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1159.4 884 68.6
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1159.1 907 67.3
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1157.9 936 67.0
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1157.9 877 69.9
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1157.1 922 66.2
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1156.7 899 67.2
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1154.8 877 70.2
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1153.7 891 68.4
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1151.3 899 67.7
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1151.3 895 68.7
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1151.3 878 69.4
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1150.6 878 70.5
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1150.2 914 67.1
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1149.4 892 67.0
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1146.0 887 68.8
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1145.2 858 71.0
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1144.8 887 68.8
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1143.3 920 66.2
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1143.3 916 66.0
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1141.7 917 66.2
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1141.7 891 69.1
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1140.6 916 68.6
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1136.3 899 67.3
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1130.2 909 66.7
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1128.2 903 66.7
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1125.5 924 65.4
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1125.2 970 64.2
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1121.7 907 66.3
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1121.3 884 65.6
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1121.3 887 67.8
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1120.9 724 78.6
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1120.9 872 67.2
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1119.4 902 66.2
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1112.8 915 65.7
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1111.7 922 65.0
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1110.9 922 65.0
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1110.9 884 66.6
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1110.5 907 65.7
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1109.7 922 64.9
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1109.7 824 70.0
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1102.8 865 67.4
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1099.7 930 63.0
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1097.4 873 65.9
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1095.1 907 65.3
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1093.2 937 63.0
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1088.2 907 64.6
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1085.5 842 70.0
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1083.9 906 66.4
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1082.8 906 66.4
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1082.4 838 67.8
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1077.4 875 64.8
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.8e-306 1055.8 823 68.8
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 1.5e-305 1052.7 860 65.1
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 1.6e-302 1042.7 881 64.1
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 2.0e-302 1042.3 876 63.0
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 2.4e-295 1018.8 770 68.6
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 2.0e-294 1015.8 873 60.5
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 3.4e-289 998.4 584 84.1
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 2.7e-278 962.2 704 72.4
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 3.6e-275 951.8 902 59.0
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 2.2e-272 942.6 715 67.0
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 1.5e-257 893.3 881 53.5
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 5.8e-257 891.3 746 64.7
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 1.3e-256 890.2 896 53.6
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 1.7e-256 889.8 875 60.6
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 8.3e-256 887.5 958 54.8
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 6.4e-248 861.3 504 81.2
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 1.8e-242 843.2 851 54.2
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 2.2e-232 809.7 700 62.0
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 3.2e-183 646.4 643 57.4
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 1.5e-175 620.9 369 78.9
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.5e-175 620.2 384 77.1
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.2e-166 591.3 341 80.6
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.6e-166 590.9 352 81.0
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 4.9e-163 579.3 361 75.9
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 5.9e-161 572.4 552 59.6
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.6e-153 547.7 460 63.7
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.9e-146 524.2 538 58.6
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 1.7e-136 491.1 697 42.9
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 8.9e-133 478.8 879 36.5
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 3.9e-128 463.4 987 36.3
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 1.9e-122 444.5 305 70.5
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 1.8e-109 401.4 297 68.0
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.4e-106 391.0 438 55.7
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 3.7e-102 377.1 512 47.3
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 1.0e-99 369.0 1026 31.8
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 1.3e-83 315.5 620 36.6
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 4.7e-73 280.4 363 54.5
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 7.0e-69 266.5 165 75.8
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 7.2e-50 203.4 327 40.1
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 1.2e-44 186.0 147 75.5
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 1.9e-42 178.7 104 80.8
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.3e-35 156.0 107 67.3
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 5.0e-35 154.1 106 70.8
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 1.6e-33 149.1 91 80.2
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 6.6e-19 100.5 81 61.7
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 8.1e-17 93.6 77 64.9
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 8.4e-14 83.6 73 69.9
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 5.4e-13 80.9 61 65.6
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.6e-12 77.8 87 49.4
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 2.3e-11 75.5 89 48.3
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 6.6e-11 73.9 69 49.3
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.5e-10 72.0 52 73.1
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.2e-07 63.2 57 57.9
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 7.6e-07 60.5 52 59.6
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 9.9e-07 60.1 53 60.4
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.7e-06 59.3 45 64.4


User provided reference genes

Program Settings