Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 4.3e-138 494.6 240 100.0
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 1.2e-114 416.8 221 91.9
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 7.5e-114 414.1 229 87.8
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 2.7e-111 405.6 229 86.5
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 8.0e-100 367.5 208 85.1
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 9.8e-98 360.5 204 85.3
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.8e-91 339.7 206 78.6
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 3.2e-80 302.4 223 66.8
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 1.0e-78 297.4 217 65.4
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 1.8e-75 286.6 224 62.1
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 3.1e-75 285.8 221 59.7
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 5.2e-75 285.0 226 62.8
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 2.0e-74 283.1 224 62.1
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.3e-73 280.4 228 62.3
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 1.7e-73 280.0 228 62.3
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 2.2e-73 279.6 228 62.3
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 2.9e-73 279.3 225 61.8
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 2.9e-73 279.3 225 62.2
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 2.9e-73 279.3 228 62.7
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 6.4e-73 278.1 228 60.1
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 2.4e-72 276.2 229 59.8
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 2.4e-72 276.2 230 57.8
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 4.1e-72 275.4 231 58.9
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 7.1e-72 274.6 228 61.8
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 9.2e-72 274.2 228 62.7
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 9.2e-72 274.2 228 60.1
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.1e-71 273.1 228 59.6
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 2.1e-71 273.1 227 59.5
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 4.6e-71 271.9 228 61.4
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 4.6e-71 271.9 228 60.5
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 6.0e-71 271.6 232 58.6
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 1.0e-70 270.8 229 59.8
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 3.0e-70 269.2 228 60.5
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 3.0e-70 269.2 224 58.9
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 8.6e-70 267.7 228 61.4
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 8.6e-70 267.7 153 83.7
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 1.1e-69 267.3 229 59.8
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 1.1e-69 267.3 228 60.5
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 1.9e-69 266.5 229 57.6
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 4.3e-69 265.4 227 57.7
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.6e-69 265.0 228 58.8
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 7.3e-69 264.6 222 59.9
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 9.5e-69 264.2 227 59.0
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 2.1e-68 263.1 227 57.7
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 2.1e-68 263.1 228 59.6
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 4.7e-68 261.9 227 57.3
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.7e-68 261.9 232 58.6
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 6.2e-68 261.5 232 57.8
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 8.1e-68 261.2 222 56.3
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.3e-67 259.6 232 57.8
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.0e-67 258.8 227 57.7
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 6.8e-67 258.1 232 57.8
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 8.9e-67 257.7 222 57.2
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 2.0e-66 256.5 229 55.9
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.6e-66 256.1 222 56.8
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 3.4e-66 255.8 226 58.4
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 4.4e-66 255.4 229 55.5
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.8e-66 255.0 228 56.6
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 9.9e-66 254.2 225 55.6
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 2.9e-65 252.7 223 52.9
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 2.9e-65 252.7 228 57.9
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 3.8e-65 252.3 227 54.2
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 4.9e-65 251.9 223 53.4
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 6.4e-65 251.5 223 52.9
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 1.4e-64 250.4 228 55.3
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 1.4e-64 250.4 228 57.9
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 1.4e-64 250.4 227 55.9
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 1.9e-64 250.0 223 53.8
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 2.4e-64 249.6 232 55.6
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 4.1e-64 248.8 223 52.5
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 5.4e-64 248.4 223 52.5
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.2e-63 247.3 229 52.4
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 1.2e-63 247.3 227 55.9
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 2.1e-63 246.5 229 56.3
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 3.5e-63 245.7 223 52.0
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 4.6e-63 245.4 223 52.0
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 4.6e-63 245.4 227 55.9
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 6.0e-63 245.0 223 52.0
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 7.8e-63 244.6 228 56.6
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 2.3e-62 243.0 224 52.2
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 3.0e-62 242.7 227 53.7
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 3.9e-62 242.3 223 52.9
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 6.6e-62 241.5 223 52.9
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 1.5e-61 240.4 225 53.3
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 3.3e-61 239.2 223 53.8
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 4.3e-61 238.8 224 50.9
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.8e-60 236.1 227 54.6
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.7e-60 235.3 226 52.2
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 6.2e-60 235.0 227 52.4
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 8.1e-60 234.6 226 51.8
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 1.8e-59 233.4 227 53.7
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 9.9e-58 227.6 205 55.1
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 4.9e-57 225.3 232 52.6
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.5e-55 219.2 213 53.1
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 4.6e-55 218.8 221 50.2
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 3.9e-54 215.7 116 89.7
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 2.9e-49 199.5 222 46.8
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 7.1e-48 194.9 229 45.0
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 2.1e-47 193.4 221 48.0
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 1.8e-46 190.3 224 45.1
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 3.9e-46 189.1 249 42.2
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 3.9e-46 189.1 218 48.2
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 4.8e-44 182.2 238 43.7
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 5.3e-43 178.7 238 42.4
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 3.4e-42 176.0 124 65.3
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 2.2e-41 173.3 236 40.7
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 5.5e-40 168.7 221 40.7
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 7.9e-39 164.9 222 41.0
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.3e-38 164.1 222 43.2
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 3.9e-38 162.5 238 38.2
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 8.7e-38 161.4 175 45.1
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 8.7e-38 161.4 175 45.1
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 5.6e-37 158.7 232 37.1
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.7e-36 156.0 224 43.3
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 8.2e-36 154.8 251 35.9
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.4e-35 153.3 251 38.2
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.3e-35 152.1 250 39.6
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 1.2e-34 151.0 234 38.5
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.2e-34 151.0 204 41.7
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.5e-34 150.6 224 42.4
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 2.6e-34 149.8 261 34.9
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 2.6e-34 149.8 229 36.7
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.6e-34 149.8 234 38.5
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.7e-33 147.1 229 37.1
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 2.2e-33 146.7 261 33.3
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 8.4e-33 144.8 232 33.2
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.2e-32 142.9 225 35.6
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 5.1e-30 135.6 233 37.3
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 6.7e-30 135.2 227 34.4
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 1.9e-29 133.7 226 34.5
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 5.7e-29 132.1 260 31.9
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 7.4e-29 131.7 223 33.6
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 9.7e-29 131.3 195 39.0
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 8.2e-28 128.3 210 35.7
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.8e-27 127.1 260 31.5
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 3.1e-27 126.3 247 32.0
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 5.3e-27 125.6 226 31.4
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 3.4e-26 122.9 152 41.4
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 1.0e-25 121.3 216 36.6
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.4e-24 117.5 227 30.8
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 1.9e-24 117.1 144 42.4
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.5e-24 116.7 252 30.2
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 7.2e-24 115.2 265 31.3
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 1.2e-23 114.4 149 40.3
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.1e-23 113.6 271 31.7
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.6e-23 112.5 269 30.1
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 1.0e-22 111.3 143 40.6
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 2.3e-22 110.2 160 38.8
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 1.3e-20 104.4 101 50.5
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.7e-20 104.0 236 30.1
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 8.2e-20 101.7 128 46.1
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.6e-18 96.7 213 34.3
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 2.6e-18 96.7 164 33.5
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 3.4e-18 96.3 169 30.8
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 2.9e-17 93.2 169 31.4
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 5.0e-17 92.4 143 37.8
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.1e-13 81.3 77 50.6
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 9.7e-13 78.2 199 25.1
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.7e-12 77.4 122 32.8
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 9.1e-11 71.6 255 26.7
Cfa026731 Carpinus fangiana HOM05D004427 ORTHO05D005381 9.4e-08 61.6 111 32.4
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 1.6e-07 60.8 76 40.8
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.0e-06 58.2 88 34.1


User provided reference genes

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