Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 0.0e+00 1197.6 573 100.0
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 5.1e-310 1067.0 573 88.3
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 5.2e-307 1057.0 573 87.6
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 4.4e-306 1053.9 573 87.4
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 4.9e-305 1050.4 573 87.1
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 6.4e-305 1050.0 573 87.3
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 9.2e-304 1046.2 573 86.6
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 1.3e-302 1042.3 573 86.2
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 3.0e-302 1041.2 573 86.7
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 3.6e-300 1034.2 573 85.9
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 3.0e-294 1014.6 551 87.1
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 6.6e-294 1013.4 551 86.9
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 7.4e-285 983.4 561 82.5
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 2.1e-284 981.9 558 83.0
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 2.1e-284 981.9 558 83.0
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 4.5e-282 974.2 550 83.3
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 1.1e-280 969.5 553 82.8
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 2.7e-279 964.9 562 81.5
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 6.0e-279 963.8 552 82.2
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 1.8e-278 962.2 552 82.4
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.3e-278 961.8 567 79.9
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 3.9e-278 961.1 556 80.8
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 6.7e-278 960.3 561 81.1
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.5e-277 959.1 552 82.2
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 1.9e-277 958.7 549 82.1
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 2.5e-277 958.4 567 79.5
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 5.6e-277 957.2 562 79.7
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 5.6e-277 957.2 552 80.4
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 9.6e-277 956.4 567 79.5
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 9.6e-277 956.4 567 80.2
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 1.3e-276 956.1 567 79.5
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.3e-276 956.1 569 79.8
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 2.8e-276 954.9 552 80.4
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 3.7e-276 954.5 567 79.5
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 3.7e-276 954.5 550 81.6
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 8.1e-276 953.4 551 80.4
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 1.1e-275 953.0 561 80.0
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 1.8e-275 952.2 549 81.2
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.8e-275 952.2 551 80.4
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 1.8e-275 952.2 549 81.1
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 3.1e-275 951.4 573 77.3
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 3.1e-275 951.4 574 79.1
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 4.0e-275 951.0 551 80.0
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 9.0e-275 949.9 551 80.0
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 1.5e-274 949.1 558 80.6
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 2.0e-274 948.7 556 79.9
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 2.6e-274 948.3 549 80.1
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 3.4e-274 948.0 551 81.1
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 4.5e-274 947.6 551 81.5
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 7.6e-274 946.8 564 79.6
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 1.7e-273 945.7 581 77.8
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 2.2e-273 945.3 569 77.9
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 2.2e-273 945.3 567 78.0
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 2.9e-273 944.9 549 80.5
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 2.9e-273 944.9 549 80.0
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 4.9e-273 944.1 569 78.4
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 1.1e-272 943.0 553 80.3
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 1.4e-272 942.6 568 78.2
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 5.5e-272 940.6 549 80.7
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 9.3e-272 939.9 548 80.8
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 1.2e-271 939.5 552 80.6
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 1.6e-271 939.1 569 77.2
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 2.7e-271 938.3 552 79.5
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 4.6e-271 937.6 569 77.0
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 1.3e-270 936.0 569 77.0
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 1.5e-269 932.6 567 76.9
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 1.5e-269 932.6 547 80.1
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 1.9e-269 932.2 569 77.2
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 1.9e-269 932.2 569 77.3
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 1.3e-268 929.5 569 77.2
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 3.7e-268 927.9 569 75.9
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 6.3e-268 927.2 569 76.3
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 8.2e-268 926.8 550 77.5
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 3.1e-267 924.9 543 79.4
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 6.9e-267 923.7 569 76.1
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 1.2e-266 922.9 550 78.7
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 2.0e-266 922.2 542 78.8
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 2.6e-266 921.8 552 77.4
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.9e-266 920.6 552 78.1
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.3e-265 919.5 570 76.8
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 1.1e-264 916.4 552 77.0
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 7.9e-263 910.2 541 78.0
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 1.0e-262 909.8 577 74.9
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 1.1e-261 906.4 542 78.2
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 1.5e-261 906.0 542 77.7
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 4.3e-261 904.4 542 77.7
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 2.8e-260 901.7 529 81.3
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 6.3e-260 900.6 541 77.4
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 5.3e-259 897.5 562 75.4
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 1.2e-258 896.3 552 76.4
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 2.5e-256 888.6 549 76.0
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 1.2e-255 886.3 544 76.8
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 5.7e-253 877.5 550 76.9
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 1.5e-250 869.4 544 73.3
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.9e-248 862.4 555 73.3
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.4e-246 856.3 550 75.3
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 2.6e-245 852.0 550 75.3
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 4.4e-245 851.3 561 72.7
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 2.2e-244 849.0 551 73.7
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 5.0e-241 837.8 549 71.4
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.1e-239 832.4 541 72.3
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.6e-239 831.6 541 72.1
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 4.7e-239 831.2 543 72.2
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 5.2e-238 827.8 494 78.5
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 6.7e-238 827.4 544 71.5
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 1.8e-230 802.7 547 70.2
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 2.2e-228 795.8 548 69.3
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 9.1e-227 790.4 541 70.6
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 1.2e-226 790.0 556 70.5
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 2.8e-223 778.9 455 81.5
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 4.4e-221 771.5 506 72.3
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 4.1e-219 765.0 553 68.7
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 1.2e-218 763.5 558 66.1
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 1.7e-217 759.6 557 65.4
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 9.8e-213 743.8 538 65.4
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 4.9e-212 741.5 424 82.1
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 5.0e-209 731.5 423 81.3
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 2.9e-204 715.7 532 64.1
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 3.9e-201 705.3 538 63.0
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.2e-199 698.0 534 64.2
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.2e-199 698.0 534 64.2
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 8.1e-199 697.6 537 62.0
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 2.6e-189 666.0 612 58.2
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 2.0e-157 560.1 552 56.5
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 7.6e-157 558.1 330 79.7
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.4e-155 553.9 334 77.5
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 7.2e-139 498.4 545 47.7
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 9.1e-134 481.5 292 77.1
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 3.7e-127 459.5 267 78.7
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 2.9e-124 449.9 309 69.9
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 3.3e-120 436.4 334 65.0
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.1e-94 351.7 199 81.9
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.8e-88 329.3 501 42.5
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 9.9e-72 275.4 338 47.0
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 2.1e-69 267.7 206 61.2
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 1.6e-58 231.5 133 84.2
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 6.4e-55 219.5 139 74.1
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 3.1e-49 200.7 129 71.3
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 4.0e-49 200.3 129 73.6
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 9.9e-48 195.7 123 72.4
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 3.8e-47 193.7 137 65.7
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 1.6e-45 188.3 109 73.4
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 3.0e-44 184.1 127 66.9
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 3.0e-44 184.1 127 66.9
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 5.6e-43 179.9 120 67.5
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 5.6e-43 179.9 120 67.5
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.2e-40 172.2 116 69.8
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 2.2e-39 167.9 119 64.7
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 2.2e-39 167.9 119 64.7
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 1.4e-38 165.2 95 74.7
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 4.8e-34 150.2 73 90.4
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 1.7e-26 125.2 79 73.4
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 1.3e-23 115.5 118 46.6
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.3e-23 115.5 86 66.3
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 3.2e-22 110.9 121 49.6
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 1.0e-20 105.9 187 38.0
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 1.3e-18 99.0 60 73.3
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 2.0e-16 91.7 63 69.8


User provided reference genes

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