Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 2.8e-157 558.5 274 100.0
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 3.1e-140 501.9 274 90.1
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 1.7e-138 496.1 274 89.8
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 7.4e-134 480.7 275 88.0
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 7.4e-118 427.6 250 83.2
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 7.4e-118 427.6 274 77.4
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 3.7e-117 425.2 279 76.0
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 4.8e-117 424.9 255 82.4
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 1.8e-116 422.9 278 76.6
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 8.5e-114 414.1 271 79.0
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 7.2e-113 411.0 284 73.9
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 3.6e-112 408.7 267 76.0
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 6.1e-112 407.9 271 75.3
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 6.1e-112 407.9 277 74.0
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 8.0e-112 407.5 277 74.4
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 1.0e-111 407.1 256 79.3
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 4.0e-111 405.2 256 79.7
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 6.7e-111 404.4 275 74.2
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 8.8e-111 404.1 280 72.1
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 8.8e-111 404.1 280 73.6
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 2.0e-110 402.9 267 76.4
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 3.3e-110 402.1 257 77.4
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 2.2e-109 399.4 268 75.7
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 2.8e-109 399.1 268 75.4
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 3.7e-109 398.7 264 75.4
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 3.7e-109 398.7 265 75.5
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 3.7e-109 398.7 265 75.5
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 3.7e-109 398.7 258 77.1
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 6.3e-109 397.9 257 77.0
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 8.2e-109 397.5 262 76.7
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 1.1e-108 397.1 281 71.5
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 1.1e-108 397.1 258 76.7
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 1.1e-108 397.1 254 77.2
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 1.4e-108 396.7 265 75.1
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 1.4e-108 396.7 268 75.0
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 1.8e-108 396.4 275 73.1
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 2.4e-108 396.0 284 70.8
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 5.3e-108 394.8 271 74.2
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 7.0e-108 394.4 265 74.3
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 7.0e-108 394.4 265 74.3
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 9.1e-108 394.0 290 69.3
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 9.1e-108 394.0 264 76.5
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 1.2e-107 393.7 278 70.9
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 1.6e-107 393.3 258 76.4
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 2.7e-107 392.5 278 70.5
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 4.5e-107 391.7 276 73.2
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 1.0e-106 390.6 277 72.6
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 1.0e-106 390.6 280 72.5
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 1.0e-106 390.6 270 72.2
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.2e-106 389.4 273 70.7
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.9e-106 389.0 274 72.3
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 5.0e-106 388.3 275 72.7
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 6.5e-106 387.9 257 73.9
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 8.5e-106 387.5 275 71.6
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 1.1e-105 387.1 309 67.3
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 1.5e-105 386.7 268 71.3
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 1.9e-105 386.3 284 70.8
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 7.2e-105 384.4 261 75.1
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 9.4e-105 384.0 260 74.2
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 4.7e-104 381.7 272 70.6
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 4.7e-104 381.7 256 74.6
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 1.0e-103 380.6 273 70.7
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 1.0e-103 380.6 272 70.6
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 1.8e-103 379.8 281 69.0
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 3.0e-103 379.0 210 84.8
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 4.0e-103 378.6 240 77.9
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 4.0e-103 378.6 308 64.9
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 8.8e-103 377.5 282 69.5
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 1.2e-102 377.1 263 74.9
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 1.2e-102 377.1 277 71.5
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 9.8e-102 374.0 265 72.1
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 6.3e-101 371.3 261 71.6
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 6.3e-101 371.3 210 82.9
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 3.1e-100 369.0 262 70.6
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 5.4e-100 368.2 273 70.3
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 9.1e-100 367.5 277 68.2
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 1.2e-99 367.1 264 71.2
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 1.2e-99 367.1 267 71.5
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 2.0e-99 366.3 283 66.4
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 2.0e-99 366.3 255 72.5
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 2.7e-99 365.9 266 69.5
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 2.7e-99 365.9 266 69.5
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 2.7e-99 365.9 270 69.6
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 4.5e-99 365.2 255 72.5
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 1.0e-98 364.0 262 70.2
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 1.0e-98 364.0 265 70.2
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 1.0e-98 364.0 265 70.2
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 1.0e-98 364.0 265 70.2
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 1.7e-98 363.2 264 69.3
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 2.3e-98 362.8 264 70.5
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 3.8e-98 362.1 266 68.4
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 3.8e-98 362.1 266 68.4
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 1.9e-97 359.8 251 70.9
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 5.5e-97 358.2 282 65.6
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 7.2e-97 357.8 249 72.3
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 1.6e-96 356.7 319 58.9
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 1.6e-96 356.7 279 67.7
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 1.8e-95 353.2 196 90.3
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 6.8e-95 351.3 276 66.3
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 2.0e-94 349.7 266 66.2
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 7.0e-92 341.3 210 77.1
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 9.2e-92 340.9 196 87.2
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 1.2e-91 340.5 206 77.7
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 1.9e-89 333.2 254 66.5
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 5.6e-89 331.6 296 59.5
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 8.0e-88 327.8 255 62.7
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 1.5e-86 323.6 283 61.1
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 9.8e-86 320.9 225 73.3
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 2.1e-80 303.1 253 64.8
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 2.1e-80 303.1 274 63.9
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 9.8e-78 294.3 253 63.2
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 1.4e-76 290.4 190 72.1
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 7.0e-76 288.1 265 60.4
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 1.6e-75 287.0 189 74.1
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 3.6e-72 275.8 282 53.5
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 1.4e-71 273.9 230 60.9
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 3.1e-71 272.7 189 70.9
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 7.5e-70 268.1 175 76.6
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 6.8e-63 245.0 181 71.8
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 2.2e-61 240.0 265 47.9
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 1.6e-59 233.8 216 51.9
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 5.1e-58 228.8 199 57.8
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 8.7e-50 201.4 170 58.2
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 4.5e-46 189.1 200 47.5
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.5e-41 173.3 233 45.5
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 1.9e-36 157.1 277 35.0
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 9.0e-31 138.3 84 82.1
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 2.1e-27 127.1 274 32.8
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 6.0e-27 125.6 80 78.8
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 1.3e-26 124.4 170 38.8
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 5.9e-22 109.0 57 86.0
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 7.6e-22 108.6 54 92.6
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 7.9e-19 98.6 52 86.5
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 5.1e-10 69.3 147 33.3
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 7.4e-09 65.5 180 30.0
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 1.7e-08 64.3 146 26.7
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 2.2e-08 63.9 169 27.8
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 3.7e-08 63.2 171 28.1
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 3.7e-08 63.2 176 28.4
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 4.8e-08 62.8 173 28.9
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.4e-07 61.2 173 28.9
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.4e-07 61.2 173 28.9
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.4e-07 61.2 177 27.7
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 1.4e-07 61.2 182 28.0
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 1.8e-07 60.8 178 28.1
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.8e-07 60.8 171 25.7
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 1.8e-07 60.8 154 29.2
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 1.8e-07 60.8 176 24.4
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 2.4e-07 60.5 169 27.2
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 3.1e-07 60.1 175 28.6
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 5.3e-07 59.3 174 28.2
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 6.9e-07 58.9 169 25.4
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 6.9e-07 58.9 175 29.1
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 6.9e-07 58.9 177 26.6
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 6.9e-07 58.9 174 29.3
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 9.1e-07 58.5 148 30.4
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 1.2e-06 58.2 176 27.3
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 2.0e-06 57.4 174 27.6
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.0e-06 57.4 174 27.6
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 2.0e-06 57.4 150 27.3
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 2.0e-06 57.4 182 28.6
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 2.0e-06 57.4 174 28.2
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 2.6e-06 57.0 146 26.7
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 2.6e-06 57.0 171 26.9
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 3.4e-06 56.6 174 27.6
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 3.4e-06 56.6 171 28.1
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 4.5e-06 56.2 150 27.3
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 4.5e-06 56.2 174 27.0
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 4.5e-06 56.2 169 29.0
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 4.5e-06 56.2 146 28.1
FvH4_5g19731 Fragaria vesca HOM05D005750 ORTHO05D035649 5.9e-06 55.8 56 58.9
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 5.9e-06 55.8 143 28.7
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 5.9e-06 55.8 169 28.4
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 7.7e-06 55.5 169 27.8
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 7.7e-06 55.5 146 26.0
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 7.7e-06 55.5 151 27.2


User provided reference genes

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