Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G338.64 Capsicum annuum HOM05D003504 ORTHO05D004006 2.6e-77 292.0 148 100.0
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 6.3e-55 217.6 155 75.5
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 3.5e-53 211.8 155 72.9
Peaxi162Scf01205g00167 Petunia axillaris HOM05D003504 ORTHO05D004006 5.0e-52 208.0 150 73.3
Nitab4.5_0001070g0090 Nicotiana tabacum HOM05D003504 ORTHO05D004006 6.5e-52 207.6 150 73.3
Nitab4.5_0000348g0150 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.6e-50 203.0 150 72.0
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 2.2e-47 192.6 155 65.8
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 4.8e-47 191.4 150 67.3
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 4.8e-47 191.4 155 64.5
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 1.1e-46 190.3 150 68.0
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 2.4e-46 189.1 150 66.7
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 3.1e-46 188.7 150 67.3
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 3.1e-46 188.7 155 63.9
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 3.1e-46 188.7 155 65.2
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 5.4e-46 188.0 155 63.2
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 7.0e-46 187.6 155 63.9
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 9.1e-46 187.2 155 63.9
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 1.2e-45 186.8 155 63.9
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 1.2e-45 186.8 150 65.3
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 1.2e-45 186.8 150 68.0
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 1.6e-45 186.4 155 63.2
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 1.6e-45 186.4 155 64.5
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 1.6e-45 186.4 155 63.2
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 2.0e-45 186.0 150 64.0
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 2.7e-45 185.7 150 64.7
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 2.7e-45 185.7 155 63.2
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 2.7e-45 185.7 155 63.2
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 3.5e-45 185.3 155 63.2
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 3.5e-45 185.3 155 65.2
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 4.5e-45 184.9 150 64.0
Cpa.g.sc34.42 Carica papaya HOM05D003504 ORTHO05D004006 4.5e-45 184.9 155 63.2
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 4.5e-45 184.9 155 63.2
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 4.5e-45 184.9 155 63.2
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 4.5e-45 184.9 150 65.3
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 5.9e-45 184.5 155 62.6
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 5.9e-45 184.5 155 62.6
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 5.9e-45 184.5 155 62.6
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 5.9e-45 184.5 155 63.2
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 7.7e-45 184.1 150 65.3
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 7.7e-45 184.1 155 62.6
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 1.0e-44 183.7 155 61.9
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 1.0e-44 183.7 150 64.7
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 1.0e-44 183.7 155 63.9
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 1.3e-44 183.3 155 62.6
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 1.3e-44 183.3 155 63.2
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 1.3e-44 183.3 155 63.9
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 1.3e-44 183.3 150 64.7
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 1.7e-44 183.0 155 63.9
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 1.7e-44 183.0 155 62.6
Ca_24183_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 2.3e-44 182.6 155 63.2
Gohir.A12G174150 Gossypium hirsutum HOM05D003504 ORTHO05D004006 2.3e-44 182.6 155 63.9
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 2.3e-44 182.6 151 64.9
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 2.3e-44 182.6 155 65.8
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 2.3e-44 182.6 150 65.3
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 2.3e-44 182.6 152 63.8
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 2.9e-44 182.2 150 63.3
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 2.9e-44 182.2 155 62.6
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 5.0e-44 181.4 155 63.2
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 6.5e-44 181.0 150 62.7
vmacro15992 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 8.6e-44 180.6 150 65.3
CSS0025770 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 1.1e-43 180.3 150 64.0
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 1.9e-43 179.5 150 64.0
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 1.9e-43 179.5 155 61.9
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 1.9e-43 179.5 155 62.6
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 1.9e-43 179.5 155 61.9
Phvul.009G114325 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 1.9e-43 179.5 155 61.9
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 1.9e-43 179.5 150 62.7
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 2.5e-43 179.1 150 63.3
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 3.3e-43 178.7 150 64.7
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 4.2e-43 178.3 150 65.3
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 4.2e-43 178.3 155 61.3
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 7.2e-43 177.6 155 60.0
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 1.2e-42 176.8 155 60.0
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 1.6e-42 176.4 150 62.7
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 4.7e-42 174.9 150 61.3
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 1.0e-41 173.7 150 61.3
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 1.0e-41 173.7 150 61.3
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 1.4e-41 173.3 155 60.0
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 4.0e-41 171.8 155 59.4
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 5.2e-41 171.4 155 59.4
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 5.2e-41 171.4 191 52.4
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 5.2e-41 171.4 155 60.6
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 5.2e-41 171.4 155 59.4
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 6.8e-41 171.0 155 59.4
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 6.8e-41 171.0 155 59.4
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 2.6e-40 169.1 150 58.7
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 2.6e-40 169.1 155 58.7
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 2.6e-40 169.1 155 58.7
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 2.6e-40 169.1 155 58.7
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 2.6e-40 169.1 155 58.7
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 2.6e-40 169.1 181 51.9
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 2.6e-40 169.1 155 56.8
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 3.4e-40 168.7 155 56.8
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 3.4e-40 168.7 150 60.7
Nn1g07198 Nelumbo nucifera HOM05D003504 ORTHO05D004006 4.4e-40 168.3 150 60.7
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 7.5e-40 167.5 151 60.3
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 1.7e-39 166.4 155 58.1
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 1.7e-39 166.4 155 58.1
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 2.2e-39 166.0 150 58.0
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 6.3e-39 164.5 150 58.7
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 8.3e-39 164.1 155 57.4
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 1.6e-37 159.8 155 55.5
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 2.0e-37 159.5 151 60.9
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 2.3e-36 156.0 150 53.3
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 9.5e-35 150.6 150 53.3
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 4.0e-33 145.2 150 53.3
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 3.4e-32 142.1 150 50.0
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 3.5e-29 132.1 151 49.0
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 5.0e-28 128.3 150 47.3
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.1e-27 127.1 151 47.7
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.1e-27 127.1 151 47.0
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 6.8e-25 117.9 160 41.2
Cc03_g11030 Coffea canephora HOM05D003504 ORTHO05D004006 2.0e-24 116.3 140 50.0
CAN.G151.23 Capsicum annuum HOM05D003504 ORTHO05D004006 2.2e-23 112.8 137 52.6
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 2.2e-23 112.8 150 44.7
CAN.G578.10 Capsicum annuum HOM05D003504 ORTHO05D001487 4.1e-22 108.6 93 63.4
MD05G1233200 Malus domestica HOM05D003504 ORTHO05D004006 6.0e-21 104.8 59 83.1
RcHm_v2.0_Chr5g0024371 Rosa chinensis HOM05D003504 ORTHO05D004006 6.0e-21 104.8 58 84.5
QL04p085812 Quercus lobata HOM05D003504 ORTHO05D004006 3.9e-20 102.1 53 90.6
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 7.3e-19 97.8 142 44.4
CAN.G307.30 Capsicum annuum HOM05D002685 ORTHO05D001487 2.1e-18 96.3 57 80.7
CAN.G861.1 Capsicum annuum HOM05D003504 ORTHO05D004006 1.8e-17 93.2 57 75.4
CAN.G83.9 Capsicum annuum HOM05D003504 ORTHO05D004006 1.3e-15 87.0 71 70.4
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 2.2e-15 86.3 88 54.5
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 1.3e-12 77.0 41 87.8
TPR.G38062 Trifolium pratense HOM05D003504 ORTHO05D004006 1.2e-10 70.5 69 53.6
TPR.G35990 Trifolium pratense HOM05D003504 ORTHO05D004006 1.6e-10 70.1 69 52.2
CAN.G103.4 Capsicum annuum HOM05D002685 ORTHO05D001487 4.0e-09 65.5 35 82.9


User provided reference genes

Program Settings