Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G338.38 Capsicum annuum HOM05D003366 ORTHO05D004045 3.1e-37 157.9 78 100.0
CAN.G126.88 Capsicum annuum HOM05D003366 ORTHO05D004045 1.5e-26 122.5 69 89.9
Solyc03g111850.3 Solanum lycopersicum HOM05D003366 ORTHO05D004045 1.2e-25 119.4 69 87.0
Sopen03g030970 Solanum pennellii HOM05D003366 ORTHO05D004045 1.2e-25 119.4 69 87.0
PGSC0003DMG400015153 Solanum tuberosum HOM05D003366 ORTHO05D004045 2.7e-25 118.2 69 85.5
Nitab4.5_0000510g0170 Nicotiana tabacum HOM05D003366 ORTHO05D004045 8.0e-25 116.7 69 85.5
Nitab4.5_0003542g0080 Nicotiana tabacum HOM05D003366 ORTHO05D004045 8.0e-25 116.7 69 85.5
Peaxi162Scf00089g01131 Petunia axillaris HOM05D003366 ORTHO05D004045 1.0e-24 116.3 69 84.1
Lsat_1_v5_gn_5_122300 Lactuca sativa HOM05D003366 ORTHO05D004045 2.0e-23 112.1 68 80.9
Lsat_1_v5_gn_7_97420 Lactuca sativa HOM05D003366 ORTHO05D004045 5.7e-23 110.5 69 78.3
Peaxi162Scf00801g00730 Petunia axillaris HOM05D003366 ORTHO05D004045 5.7e-23 110.5 69 79.7
Hma1.2p1_0629F.1_g192240 Hydrangea macrophylla HOM05D003366 ORTHO05D004045 7.5e-23 110.2 68 80.9
Nitab4.5_0000025g0230 Nicotiana tabacum HOM05D003366 ORTHO05D004045 1.7e-22 109.0 69 76.8
Migut.O00185 Erythranthe guttata HOM05D003366 ORTHO05D004045 2.8e-22 108.2 69 76.8
Oeu023461.1 Olea europaea HOM05D003366 ORTHO05D004045 2.8e-22 108.2 68 77.9
Migut.D02018 Erythranthe guttata HOM05D003366 ORTHO05D004045 4.9e-22 107.5 69 76.8
Oeu045495.1 Olea europaea HOM05D003366 ORTHO05D004045 4.9e-22 107.5 68 76.5
CsaV3_7G002440 Cucumis sativus L. HOM05D003366 ORTHO05D004045 6.3e-22 107.1 68 76.5
SalBow5G1323 Salvia bowleyana HOM05D003366 ORTHO05D004045 6.3e-22 107.1 68 77.9
SalBow5G5386 Salvia bowleyana HOM05D003366 ORTHO05D004045 6.3e-22 107.1 68 77.9
ECA234G0856 Erigeron canadensis HOM05D003366 ORTHO05D004045 8.3e-22 106.7 68 76.5
MELO3C024189.2 Cucumis melo HOM05D003366 ORTHO05D004045 1.1e-21 106.3 68 75.0
Hma1.2p1_0599F.1_g187060 Hydrangea macrophylla HOM05D003366 ORTHO05D004045 1.1e-21 106.3 68 79.4
Lj8A136T94 Lonicera japonica HOM05D003366 ORTHO05D004045 1.1e-21 106.3 68 76.5
PGR031G3285 Punica granatum HOM05D003366 ORTHO05D004045 1.1e-21 106.3 68 77.9
FAN10G3881 Fragaria x ananassa HOM05D003366 ORTHO05D004045 1.8e-21 105.5 68 77.9
FAN14G5851 Fragaria x ananassa HOM05D003366 ORTHO05D004045 1.8e-21 105.5 68 77.9
Cc04_g11110 Coffea canephora HOM05D003366 ORTHO05D004045 2.4e-21 105.1 68 76.5
HanXRQChr10g0306821 Helianthus annuus HOM05D003366 ORTHO05D004045 2.4e-21 105.1 68 75.0
TWI75G1649 Tripterygium wilfordii HOM05D003366 ORTHO05D004045 2.4e-21 105.1 68 75.0
BolC3t17760H Brassica oleracea HOM05D003366 ORTHO05D004045 3.1e-21 104.8 68 77.9
Sp3g23210 Schrenkiella parvula HOM05D003366 ORTHO05D004045 3.1e-21 104.8 68 76.5
DCAR_019671 Daucus carota HOM05D003366 ORTHO05D004045 4.1e-21 104.4 68 77.9
BcaC01g03208 Brassica carinata HOM05D003366 ORTHO05D004045 5.4e-21 104.0 68 76.5
A03p44300 Brassica napus HOM05D003366 ORTHO05D004045 5.4e-21 104.0 68 76.5
BraA03t13559Z Brassica rapa HOM05D003366 ORTHO05D004045 5.4e-21 104.0 68 76.5
TWI18G0380 Tripterygium wilfordii HOM05D003366 ORTHO05D004045 5.4e-21 104.0 68 76.5
Aa31sc202G30 Aethionema arabicum HOM05D003366 ORTHO05D004045 7.0e-21 103.6 68 75.0
HanXRQChr11g0329411 Helianthus annuus HOM05D003366 ORTHO05D004045 7.0e-21 103.6 69 73.9
TWI36G0699 Tripterygium wilfordii HOM05D003366 ORTHO05D004045 7.0e-21 103.6 68 75.0
THA.LOC104808841 Tarenaya hassleriana HOM05D003366 ORTHO05D004045 9.1e-21 103.2 69 73.9
MSTRG.9698 Avicennia marina HOM05D003366 ORTHO05D004045 1.2e-20 102.8 69 72.5
Ciclev10015498m.g Citrus clementina HOM05D003366 ORTHO05D004045 1.2e-20 102.8 68 76.5
THA.LOC104819033 Tarenaya hassleriana HOM05D003366 ORTHO05D004045 1.2e-20 102.8 68 76.5
FAN05G5269 Fragaria x ananassa HOM05D003366 ORTHO05D004045 1.6e-20 102.4 68 76.5
FAN09G3658 Fragaria x ananassa HOM05D004224 ORTHO05D006437 1.6e-20 102.4 68 76.5
MBI14_g24035_MAGBIO Magnolia biondii HOM05D003366 ORTHO05D004045 1.6e-20 102.4 68 77.9
Carub.0003s2605 Capsella rubella HOM05D003366 ORTHO05D004045 2.0e-20 102.1 68 75.0
CARHR102260 Cardamine hirsuta HOM05D003366 ORTHO05D004045 2.0e-20 102.1 68 73.5
Lj1A799T34 Lonicera japonica HOM05D003366 ORTHO05D004045 2.0e-20 102.1 68 75.0
GSVIVG01030116001 Vitis vinifera HOM05D003366 ORTHO05D004045 2.0e-20 102.1 68 73.5
BcaB08g34466 Brassica carinata HOM05D003366 ORTHO05D004045 2.7e-20 101.7 68 75.0
C03p54710 Brassica napus HOM05D003366 ORTHO05D004045 2.7e-20 101.7 68 75.0
MD17G1118200 Malus domestica HOM05D003366 ORTHO05D004045 2.7e-20 101.7 68 76.5
Manes.12G063602 Manihot esculenta HOM05D003366 ORTHO05D004045 2.7e-20 101.7 68 73.5
PSO675G3120 Papaver somniferum HOM05D003366 ORTHO05D004045 2.7e-20 101.7 69 72.5
AT2G04400 Arabidopsis thaliana HOM05D003366 ORTHO05D004045 3.5e-20 101.3 68 73.5
CSS0040673 Camellia sinensis var. sinensis HOM05D003366 ORTHO05D004045 3.5e-20 101.3 68 73.5
Cpa.g.sc136.37 Carica papaya HOM05D003366 ORTHO05D004045 3.5e-20 101.3 68 73.5
COL.COLO4_19639 Corchorus olitorius HOM05D003366 ORTHO05D004045 3.5e-20 101.3 68 73.5
Gohir.A11G148200 Gossypium hirsutum HOM05D003366 ORTHO05D004045 3.5e-20 101.3 68 73.5
TAR626G1358 Trochodendron aralioides HOM05D003366 ORTHO05D004045 3.5e-20 101.3 68 75.0
FAN02G0729 Fragaria x ananassa HOM05D003366 ORTHO05D004045 4.5e-20 100.9 68 75.0
PSO210G3015 Papaver somniferum HOM05D003366 ORTHO05D004045 4.5e-20 100.9 68 75.0
Sed0016337 Sechium edule HOM05D003366 ORTHO05D004045 4.5e-20 100.9 68 72.1
ClCG02G002960 Citrullus lanatus HOM05D003366 ORTHO05D004045 5.9e-20 100.5 68 70.6
Duzib138G0143 Durio zibethinus HOM05D003366 ORTHO05D004045 5.9e-20 100.5 68 73.5
Gohir.D07G170900 Gossypium hirsutum HOM05D003366 ORTHO05D004045 5.9e-20 100.5 68 73.5
Nn6g34363 Nelumbo nucifera HOM05D003366 ORTHO05D004045 5.9e-20 100.5 68 75.0
SGA_v2.0_scaffold25G10778 Striga asiatica HOM05D003366 ORTHO05D004045 5.9e-20 100.5 69 71.0
unitig_21.g20442 Utricularia gibba HOM05D003366 ORTHO05D004045 5.9e-20 100.5 69 71.0
AL3G42040 Arabidopsis lyrata HOM05D003366 ORTHO05D004045 1.0e-19 99.8 68 72.1
CiPaw.03G282800 Carya illinoinensis HOM05D003366 ORTHO05D004045 1.0e-19 99.8 68 73.5
PSO210G6970 Papaver somniferum HOM05D003366 ORTHO05D004045 1.0e-19 99.8 68 75.0
Sabra14G0128900 Salix brachista HOM05D003366 ORTHO05D004045 1.0e-19 99.8 68 73.5
Cfa014212 Carpinus fangiana HOM05D003366 ORTHO05D004045 1.3e-19 99.4 68 73.5
Thhalv10002557m.g Eutrema salsugineum HOM05D003366 ORTHO05D004045 1.3e-19 99.4 68 73.5
LjContig00357g0014369 Lotus japonicus HOM05D003366 ORTHO05D004045 1.3e-19 99.4 68 75.0
MD09G1129300 Malus domestica HOM05D003366 ORTHO05D004045 1.3e-19 99.4 68 73.5
Gorai.001G191000 Gossypium raimondii HOM05D003366 ORTHO05D004045 1.7e-19 99.0 68 72.1
PSO541G3149 Papaver somniferum HOM05D003366 ORTHO05D004045 1.7e-19 99.0 69 71.0
Nn1g03151 Nelumbo nucifera HOM05D003366 ORTHO05D004045 2.3e-19 98.6 68 73.5
Prupe.3G196200 Prunus persica HOM05D003366 ORTHO05D004045 2.3e-19 98.6 68 70.6
Actinidia18830 Actinidia chinensis HOM05D003366 ORTHO05D004045 2.9e-19 98.2 68 73.5
arahy.Tifrunner.gnm1.ann1.65EY62 Arachis hypogaea HOM05D003366 ORTHO05D004045 2.9e-19 98.2 68 70.6
arahy.Tifrunner.gnm1.ann1.SQZ1L0 Arachis hypogaea HOM05D003366 ORTHO05D004045 2.9e-19 98.2 68 70.6
arahy.Tifrunner.gnm1.ann1.0B41PU Arachis hypogaea HOM05D003366 ORTHO05D004045 3.8e-19 97.8 68 70.6
arahy.Tifrunner.gnm1.ann1.8VJ98X Arachis hypogaea HOM05D003366 ORTHO05D004045 3.8e-19 97.8 68 70.6
BolC3t17665H Brassica oleracea HOM05D003366 ORTHO05D004045 3.8e-19 97.8 68 72.1
Eucgr.A01368 Eucalyptus grandis HOM05D003366 ORTHO05D004045 3.8e-19 97.8 68 73.5
Gorai.007G165300 Gossypium raimondii HOM05D003366 ORTHO05D004045 3.8e-19 97.8 68 72.1
Potri.014G169100 Populus trichocarpa HOM05D003366 ORTHO05D004045 3.8e-19 97.8 68 73.5
Aqoxy3G01284 Aquilegia oxysepala HOM05D003366 ORTHO05D004045 5.0e-19 97.4 68 73.5
Gohir.A07G163900 Gossypium hirsutum HOM05D003366 ORTHO05D004045 5.0e-19 97.4 68 72.1
Rhsim04G0030100 Rhododendron simsii HOM05D003366 ORTHO05D004045 5.0e-19 97.4 68 70.6
Gohir.D11G155000 Gossypium hirsutum HOM05D003366 ORTHO05D004045 6.6e-19 97.1 68 72.1
HPP92_022822 Vanilla planifolia HOM05D003366 ORTHO05D004045 6.6e-19 97.1 68 69.1
EL10Ac2g04021 Beta vulgaris HOM05D003366 ORTHO05D004045 8.6e-19 96.7 68 72.1
CARHR184070 Cardamine hirsuta HOM05D003366 ORTHO05D004045 8.6e-19 96.7 68 70.6
CDE02G1598 Ceratophyllum demersum HOM05D003366 ORTHO05D004045 1.1e-18 96.3 69 69.6
Medtr5g084030 Medicago truncatula HOM05D003366 ORTHO05D004045 1.1e-18 96.3 68 70.6
ATR0751G192 Amborella trichopoda HOM05D003366 ORTHO05D004045 1.5e-18 95.9 69 66.7
Thhalv10004384m.g Eutrema salsugineum HOM05D003366 ORTHO05D004045 1.5e-18 95.9 68 72.1
RcHm_v2.0_Chr2g0155751 Rosa chinensis HOM05D003366 ORTHO05D004045 1.5e-18 95.9 68 70.6
TPR.G20196 Trifolium pratense HOM05D003366 ORTHO05D004045 1.5e-18 95.9 68 69.1
Ah.16g105750 Amaranthus hybridus HOM05D003366 ORTHO05D004045 1.9e-18 95.5 68 72.1
AUR62039696 Chenopodium quinoa HOM05D003366 ORTHO05D004045 1.9e-18 95.5 68 72.1
Ca_06031_v3 Cicer arietinum L. HOM05D003366 ORTHO05D004045 1.9e-18 95.5 68 72.1
Psat2g028840 Pisum sativum HOM05D003366 ORTHO05D004045 1.9e-18 95.5 68 70.6
TAR629G0562 Trochodendron aralioides HOM05D003366 ORTHO05D004045 1.9e-18 95.5 68 72.1
Psat1g185040 Pisum sativum HOM05D003366 ORTHO05D004045 2.5e-18 95.1 68 69.1
QL04p067730 Quercus lobata HOM05D003366 ORTHO05D004045 2.5e-18 95.1 68 67.6
BcaC06g30818 Brassica carinata HOM05D003366 ORTHO05D004045 3.3e-18 94.7 68 70.6
Glyma.14G053300 Glycine max HOM05D003366 ORTHO05D004045 3.3e-18 94.7 68 69.1
Sp2g18590 Schrenkiella parvula HOM05D003366 ORTHO05D004045 3.3e-18 94.7 68 70.6
Aqoxy1G04276 Aquilegia oxysepala HOM05D003366 ORTHO05D004045 4.2e-18 94.4 68 70.6
Phvul.008G218200 Phaseolus vulgaris HOM05D003366 ORTHO05D004045 4.2e-18 94.4 68 70.6
AUR62009285 Chenopodium quinoa HOM05D003366 ORTHO05D004045 5.5e-18 94.0 68 72.1
RcHm_v2.0_Chr5g0011911 Rosa chinensis HOM05D003366 ORTHO05D004045 5.5e-18 94.0 68 72.1
Sc21g0000490 Simmondsia chinensis HOM05D003366 ORTHO05D004045 5.5e-18 94.0 68 73.5
CANSAT64G2473 Cannabis sativa HOM05D003366 ORTHO05D004045 7.2e-18 93.6 68 70.6
CDE02G1466 Ceratophyllum demersum HOM05D003366 ORTHO05D004045 7.2e-18 93.6 68 72.1
Os04g0467700 Oryza sativa ssp. japonica HOM05D003366 ORTHO05D004045 7.2e-18 93.6 68 69.1
C07p38950 Brassica napus HOM05D003366 ORTHO05D004045 9.5e-18 93.2 68 69.1
Glyma.02G259000 Glycine max HOM05D003366 ORTHO05D004045 9.5e-18 93.2 68 67.6
VMungo0647G1799 Vigna mungo HOM05D003366 ORTHO05D004045 1.2e-17 92.8 68 69.1
AL8G20910 Arabidopsis lyrata HOM05D003366 ORTHO05D004045 1.6e-17 92.4 68 69.1
AT5G48220 Arabidopsis thaliana HOM05D003366 ORTHO05D004045 1.6e-17 92.4 68 69.1
Carub.0008s0779 Capsella rubella HOM05D003366 ORTHO05D004045 1.6e-17 92.4 68 69.1
Hund03398 Selenicereus undatus HOM05D003366 ORTHO05D004045 1.6e-17 92.4 68 70.6
Hund13735 Selenicereus undatus HOM05D003366 ORTHO05D004045 1.6e-17 92.4 68 70.6
A06p39320 Brassica napus HOM05D003366 ORTHO05D004045 2.8e-17 91.7 68 67.6
BraA06t26847Z Brassica rapa HOM05D003366 ORTHO05D004045 2.8e-17 91.7 68 67.6
Thecc.01G197700 Theobroma cacao HOM05D003366 ORTHO05D004045 2.8e-17 91.7 68 67.6
Thecc.01G198100 Theobroma cacao HOM05D003366 ORTHO05D004045 2.8e-17 91.7 68 67.6
vmacro09477 Vaccinium macrocarpon HOM05D003366 ORTHO05D004045 2.8e-17 91.7 68 66.2
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 3.6e-17 91.3 65 70.8
Zm00001eb424560 Zea mays HOM05D003366 ORTHO05D004045 3.6e-17 91.3 68 66.2
BolC7t44416H Brassica oleracea HOM05D003366 ORTHO05D004045 4.7e-17 90.9 67 68.7
CBR_g10789 Chara braunii HOM05D003366 ORTHO05D004045 4.7e-17 90.9 69 65.2
AUR62008962 Chenopodium quinoa HOM05D003366 ORTHO05D004045 6.1e-17 90.5 68 67.6
AUR62014541 Chenopodium quinoa HOM05D003366 ORTHO05D004045 8.0e-17 90.1 68 67.6
Lalb_Chr04g0250271 Lupinus albus HOM05D003366 ORTHO05D004045 8.0e-17 90.1 70 64.3
Mapoly0007s0091 Marchantia polymorpha HOM05D003366 ORTHO05D004045 8.0e-17 90.1 68 64.7
Lalb_Chr10g0105441 Lupinus albus HOM05D003366 ORTHO05D004045 1.8e-16 89.0 68 67.6
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 2.3e-16 88.6 61 72.1
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 2.3e-16 88.6 61 72.1
Zm00001eb414460 Zea mays HOM05D003366 ORTHO05D004045 2.3e-16 88.6 68 70.6
Ah.16g101920 Amaranthus hybridus HOM05D003366 ORTHO05D004045 3.0e-16 88.2 69 63.8
EL10Ac2g04609 Beta vulgaris HOM05D003366 ORTHO05D004045 3.0e-16 88.2 68 67.6
Os09g0255400 Oryza sativa ssp. japonica HOM05D003366 ORTHO05D004045 3.0e-16 88.2 68 67.6
SGA_v2.0_scaffold7G04167 Striga asiatica HOM05D000527 ORTHO05D000559 4.0e-16 87.8 48 83.3
Aa31LG5G13060 Aethionema arabicum HOM05D003366 ORTHO05D004045 5.2e-16 87.4 63 69.8
Pp3c10_25830 Physcomitrium patens HOM05D003366 ORTHO05D004045 8.9e-16 86.7 68 64.7
AagrBONN_evm.TU.Sc2ySwM_344.1836 Anthoceros agrestis HOM05D003366 ORTHO05D004045 3.4e-15 84.7 66 63.6
SEGI_01884 Sequoiadendron giganteum HOM05D003366 ORTHO05D004045 5.7e-15 84.0 68 60.3
Cre13.g602350 Chlamydomonas reinhardtii HOM05D003366 ORTHO05D004045 7.5e-15 83.6 73 49.3
Nitab4.5_0000774g0060 Nicotiana tabacum HOM05D003366 ORTHO05D004045 2.2e-14 82.0 48 77.1
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 3.7e-14 81.3 54 75.9
Cc00_g28210 Coffea canephora HOM05D003366 ORTHO05D004045 1.8e-13 79.0 47 78.7
SMO143G0312 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 7.0e-13 77.0 67 61.2
MCO11G068 Micromonas commoda HOM05D003366 ORTHO05D004045 2.0e-12 75.5 70 54.3
Dinv26592 Davidia involucrata HOM05D003366 ORTHO05D004045 2.7e-12 75.1 66 60.6
Zm00001eb309260 Zea mays HOM05D003366 ORTHO05D004045 3.5e-12 74.7 69 59.4
BcaB06g26784 Brassica carinata HOM05D003366 ORTHO05D004045 5.9e-12 73.9 55 69.1
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 9.5e-10 66.6 62 59.7
PRCOL_00002196 Prasinoderma coloniale HOM05D003366 ORTHO05D004045 1.6e-09 65.9 72 41.7
Actinidia35201 Actinidia chinensis HOM05D003366 ORTHO05D004045 3.7e-06 54.7 52 55.8
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 4.9e-06 54.3 47 57.4


User provided reference genes

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