Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G337.89 Capsicum annuum HOM05D003177 ORTHO05D003481 0.0e+00 1380.5 708 100.0
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 4.3e-242 841.6 482 91.7
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 1.7e-177 627.1 496 68.1
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 5.9e-175 618.6 460 71.5
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 1.9e-165 587.0 504 64.1
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 3.8e-158 562.8 521 60.5
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 3.0e-155 553.1 476 63.9
Dinv22304 Davidia involucrata HOM05D003177 ORTHO05D003481 3.9e-126 456.4 485 52.6
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 8.1e-116 422.2 546 46.0
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 2.3e-110 404.1 480 47.7
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 1.5e-109 401.4 473 46.1
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 9.6e-109 398.7 510 45.3
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 1.4e-107 394.8 498 46.0
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 1.3e-105 388.3 462 46.8
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 4.9e-105 386.3 437 49.4
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 1.1e-104 385.2 570 41.8
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 1.4e-104 384.8 542 41.9
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 3.2e-104 383.6 523 42.1
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 2.1e-103 380.9 534 41.0
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 1.7e-102 377.9 458 44.1
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 6.6e-102 375.9 526 42.0
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 8.7e-102 375.6 514 42.4
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 6.2e-100 369.4 527 41.6
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 3.1e-99 367.1 395 47.1
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 1.2e-98 365.2 658 35.0
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 3.4e-98 363.6 494 43.5
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 1.7e-97 361.3 455 45.7
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 3.8e-97 360.1 469 44.3
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 1.1e-96 358.6 500 43.0
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 4.2e-96 356.7 499 41.1
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 1.2e-95 355.1 462 44.2
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 1.2e-95 355.1 495 42.0
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 1.6e-95 354.8 354 52.8
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 4.6e-95 353.2 482 42.1
Lj3g0022760 Lotus japonicus HOM05D003177 ORTHO05D003481 3.0e-94 350.5 468 42.1
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 3.9e-94 350.1 470 42.3
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 1.5e-93 348.2 436 42.9
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 2.5e-93 347.4 507 38.9
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 3.3e-93 347.1 442 43.9
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 5.6e-93 346.3 422 43.6
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 7.4e-93 345.9 497 41.2
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 9.6e-93 345.5 506 40.9
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.1e-92 344.4 506 41.1
RcHm_v2.0_Chr5g0037541 Rosa chinensis HOM05D003177 ORTHO05D003481 2.8e-92 344.0 464 43.3
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 8.1e-92 342.4 422 43.8
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 8.1e-92 342.4 430 43.0
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.1e-91 340.5 470 42.1
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 9.0e-91 339.0 467 41.5
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 3.4e-90 337.0 435 43.0
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 5.8e-90 336.3 410 44.6
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 1.1e-88 332.0 448 41.3
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 1.9e-88 331.3 471 38.9
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 1.9e-88 331.3 528 40.2
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 1.9e-88 331.3 500 41.8
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 1.3e-86 325.1 435 42.1
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 1.3e-86 325.1 449 40.5
Lalb_Chr14g0366151 Lupinus albus HOM05D003177 ORTHO05D003481 3.9e-86 323.6 445 39.8
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 1.5e-85 321.6 407 41.3
VMungo1127G0088 Vigna mungo HOM05D003177 ORTHO05D003481 1.9e-85 321.2 475 40.0
Glyma.12G214200 Glycine max HOM05D003177 ORTHO05D003481 2.5e-85 320.9 408 40.7
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 4.3e-85 320.1 478 39.1
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 5.6e-85 319.7 453 40.4
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 7.4e-85 319.3 402 42.3
AUR62020553 Chenopodium quinoa HOM05D003177 ORTHO05D003481 9.6e-85 318.9 509 38.9
Potri.011G133100 Populus trichocarpa HOM05D003177 ORTHO05D003481 4.8e-84 316.6 443 41.1
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 6.2e-84 316.2 504 37.3
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 1.8e-83 314.7 401 44.4
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 1.8e-83 314.7 448 40.8
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.4e-82 310.5 446 38.6
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.4e-82 310.5 446 38.6
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 4.5e-82 310.1 412 42.5
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.3e-81 308.5 446 38.6
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 1.3e-81 308.5 449 39.6
Lj4g0006066 Lotus japonicus HOM05D003177 ORTHO05D003481 4.9e-81 306.6 406 41.4
Phvul.003G295700 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 1.4e-80 305.1 437 38.9
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 1.2e-79 302.0 446 37.9
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 1.3e-78 298.5 470 39.1
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 2.3e-78 297.7 306 50.7
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 6.7e-78 296.2 452 39.8
Sabra16G0283700 Salix brachista HOM05D003177 ORTHO05D003481 1.1e-77 295.4 430 39.1
Duzib213G0184 Durio zibethinus HOM05D003177 ORTHO05D003481 1.5e-77 295.0 408 40.9
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 3.3e-77 293.9 446 38.6
arahy.Tifrunner.gnm1.ann1.LTHE3G Arachis hypogaea HOM05D003177 ORTHO05D003481 7.4e-77 292.7 448 36.8
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.6e-76 291.6 541 34.4
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 4.8e-76 290.0 419 38.9
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 4.1e-75 287.0 423 39.2
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 1.5e-74 285.0 399 39.6
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 1.5e-74 285.0 399 39.6
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 3.4e-74 283.9 439 38.0
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 5.9e-74 283.1 399 39.3
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 5.9e-74 283.1 399 39.3
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 1.7e-73 281.6 365 40.5
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 3.8e-73 280.4 324 45.1
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 5.0e-73 280.0 527 35.3
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 8.5e-73 279.3 404 39.1
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 5.5e-72 276.6 509 35.0
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 9.3e-72 275.8 451 36.6
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 6.1e-71 273.1 491 32.6
QL08p013313 Quercus lobata HOM05D003177 ORTHO05D003481 1.8e-70 271.6 420 40.0
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 3.0e-70 270.8 443 36.6
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 3.9e-70 270.4 506 35.2
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 5.1e-70 270.0 509 35.0
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 5.1e-70 270.0 509 35.0
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 6.7e-70 269.6 503 34.2
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 1.1e-69 268.9 495 36.0
arahy.Tifrunner.gnm1.ann1.JSI4TH Arachis hypogaea HOM05D003177 ORTHO05D003481 3.3e-69 267.3 316 44.9
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 4.3e-69 266.9 503 35.2
VMungo1080G1398 Vigna mungo HOM05D003177 ORTHO05D003481 5.7e-69 266.5 418 37.3
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 1.3e-68 265.4 503 34.6
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 3.7e-68 263.8 445 36.2
arahy.Tifrunner.gnm1.ann1.2UU78P Arachis hypogaea HOM05D003177 ORTHO05D003481 3.1e-67 260.8 317 44.5
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 4.1e-67 260.4 411 36.7
Ca_01752_v3 Cicer arietinum L. HOM05D003177 ORTHO05D003481 6.9e-67 259.6 352 40.6
CsaV3_UNG228980 Cucumis sativus L. HOM05D003177 ORTHO05D003481 2.0e-66 258.1 363 41.0
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 3.4e-66 257.3 481 34.9
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 1.0e-65 255.8 539 33.2
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 1.7e-65 255.0 401 36.9
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 2.2e-65 254.6 357 40.3
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 3.8e-65 253.8 408 36.8
Psat5g251840 Pisum sativum HOM05D003177 ORTHO05D003481 3.8e-65 253.8 370 37.8
Ciclev10008319m.g Citrus clementina HOM05D003177 ORTHO05D003481 1.1e-64 252.3 281 47.3
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 1.4e-64 251.9 448 33.7
TPR.G36746 Trifolium pratense HOM05D003177 ORTHO05D003481 3.6e-63 247.3 389 38.0
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 1.0e-62 245.7 453 35.8
Ciclev10008519m.g Citrus clementina HOM05D003177 ORTHO05D003481 3.3e-61 240.7 345 42.0
Medtr2g082940 Medicago truncatula HOM05D003177 ORTHO05D003481 7.4e-61 239.6 432 35.6
FvH4_3g43180 Fragaria vesca HOM05D003177 ORTHO05D003481 2.4e-59 234.6 340 39.4
FAN21G1934 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.9e-59 233.0 340 38.8
FvH4_3g43110 Fragaria vesca HOM05D003177 ORTHO05D003481 9.1e-59 232.6 340 39.1
SHI50408 Sapria himalayana HOM05D003177 ORTHO05D003481 1.7e-57 228.4 269 45.0
Sc19g0005960 Simmondsia chinensis HOM05D003177 ORTHO05D003481 7.9e-55 219.5 309 44.0
Os02g0132600 Oryza sativa ssp. japonica HOM05D003177 ORTHO05D003481 3.0e-54 217.6 286 38.8
Medtr7g007510 Medicago truncatula HOM05D003177 ORTHO05D003481 1.1e-51 209.1 385 35.3
Phvul.005G091800 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 9.1e-51 206.1 495 31.5
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 2.6e-50 204.5 226 47.3
Cpa.g.sc97.66 Carica papaya HOM05D003177 ORTHO05D003481 7.7e-50 203.0 284 40.8
PSO478G2228 Papaver somniferum HOM05D003177 ORTHO05D003481 2.9e-49 201.1 264 43.9
FAN11G0113 Fragaria x ananassa HOM05D003177 ORTHO05D003481 7.2e-48 196.4 353 36.5
Hma1.2p1_1546F.1_g289980 Hydrangea macrophylla HOM05D003177 ORTHO05D003481 2.1e-47 194.9 217 49.3
FvH4_3g42340 Fragaria vesca HOM05D003177 ORTHO05D003481 1.0e-46 192.6 347 36.0
Medtr4g081210 Medicago truncatula HOM05D003177 ORTHO05D003481 5.2e-46 190.3 407 32.2
FvH4_3g42560 Fragaria vesca HOM05D003177 ORTHO05D003481 1.5e-45 188.7 347 35.4
CDE12G0466 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 2.4e-43 181.4 172 50.6
FAN28G1104 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.5e-42 177.2 388 33.0
Glyma.U031131 Glycine max HOM05D003177 ORTHO05D003481 1.0e-41 176.0 251 40.6
FAN21G2694 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.9e-41 174.5 199 43.7
AL1G67350 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 2.1e-39 168.3 316 32.6
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 1.0e-38 166.0 313 34.8
FAN11G2904 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.4e-37 160.6 384 30.7
AL1G67370 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 9.8e-37 159.5 344 30.8
Glyma.U031231 Glycine max HOM05D003177 ORTHO05D003481 3.5e-34 151.0 184 41.8
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 1.0e-33 149.4 154 53.9
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 1.0e-33 149.4 317 34.4
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 5.5e-32 143.7 231 39.4
Glyma.13G287400 Glycine max HOM05D003177 ORTHO05D003481 6.1e-31 140.2 221 38.9
CsaV3_UNG228990 Cucumis sativus L. HOM05D003177 ORTHO05D003481 1.2e-29 136.0 172 44.2
BcaC09g51195 Brassica carinata HOM05D003177 ORTHO05D003481 1.5e-29 135.6 233 37.3
SEGI_03301 Sequoiadendron giganteum HOM05D003177 ORTHO05D003481 2.7e-26 124.8 240 31.7
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 1.4e-22 112.5 163 42.3
Nitab4.5_0000743g0080 Nicotiana tabacum HOM05D003177 ORTHO05D003481 5.2e-22 110.5 209 34.4
Lju3590A0T11 Lonicera japonica HOM05D003177 ORTHO05D003481 8.3e-20 103.2 191 34.0
QL08p013320 Quercus lobata HOM05D003177 ORTHO05D003481 7.0e-19 100.1 119 46.2
FAN16G1316 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.0e-18 98.6 172 34.9
PGSC0003DMG400019225 Solanum tuberosum HOM05D003177 ORTHO05D003481 6.6e-17 93.6 93 54.8
FAN11G0078 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.8e-15 88.2 219 29.7
Lj1A863T65 Lonicera japonica HOM05D003177 ORTHO05D003481 4.7e-15 87.4 76 53.9
FvH4_3g41772 Fragaria vesca HOM05D003177 ORTHO05D003481 6.2e-15 87.0 126 38.1
PGSC0003DMG400046683 Solanum tuberosum HOM05D008032 ORTHO05D006370 2.3e-14 85.1 67 55.2
PGSC0003DMG400046742 Solanum tuberosum HOM05D008032 ORTHO05D011642 2.3e-14 85.1 67 55.2
PGSC0003DMG400025637 Solanum tuberosum HOM05D008032 ORTHO05D006370 2.0e-13 82.0 98 45.9
PGSC0003DMG400023090 Solanum tuberosum HOM05D008032 ORTHO05D011642 2.6e-13 81.6 70 52.9
Actinidia35317 Actinidia chinensis HOM05D003177 ORTHO05D003481 3.4e-13 81.3 77 49.4
PGSC0003DMG400037946 Solanum tuberosum HOM05D008032 ORTHO05D006370 1.7e-12 79.0 170 33.5
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 3.7e-12 77.8 49 69.4
Sc19g0005940 Simmondsia chinensis HOM05D003177 ORTHO05D003481 4.9e-12 77.4 91 37.4
unitig_26.g9968 Utricularia gibba HOM05D003177 ORTHO05D003481 1.9e-11 75.5 120 39.2
Glyma.12G135400 Glycine max HOM05D003177 ORTHO05D003481 7.8e-10 70.1 103 39.8
CDE12G0546 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 2.3e-09 68.6 94 35.1
CARHR228590 Cardamine hirsuta HOM05D003177 ORTHO05D003481 6.6e-09 67.0 88 37.5
Pp3c10_3690 Physcomitrium patens HOM05D015612 ORTHO05D003481 1.1e-08 66.2 337 22.6
Medtr4g133410 Medicago truncatula HOM05D003177 ORTHO05D003481 1.4e-06 59.3 147 30.6
PGSC0003DMG400014669 Solanum tuberosum HOM05D031342 ORTHO05D011642 8.9e-06 56.6 75 37.3


User provided reference genes

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