Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G311.92 Capsicum annuum HOM05D005865 ORTHO05D006867 3.0e-276 954.5 475 100.0
PGSC0003DMG400009964 Solanum tuberosum HOM05D005865 ORTHO05D006867 1.6e-248 862.4 474 90.3
Solyc04g082130.4 Solanum lycopersicum HOM05D005865 ORTHO05D006867 2.5e-246 855.1 474 89.7
Sopen04g035760 Solanum pennellii HOM05D005865 ORTHO05D006867 1.2e-245 852.8 474 89.2
Peaxi162Scf00174g01413 Petunia axillaris HOM05D005865 ORTHO05D006867 6.0e-224 780.8 473 83.3
CSS0021595 Camellia sinensis var. sinensis HOM05D005865 ORTHO05D006867 7.0e-164 581.3 473 62.8
Actinidia37960 Actinidia chinensis HOM05D005865 ORTHO05D006867 8.5e-162 574.3 483 61.7
Nitab4.5_0000588g0310 Nicotiana tabacum HOM05D005865 ORTHO05D006867 2.3e-159 566.2 472 65.3
Lsat_1_v5_gn_2_5921 Lactuca sativa HOM05D005865 ORTHO05D006867 7.0e-156 554.7 462 59.7
Thecc.08G054600 Theobroma cacao HOM05D005865 ORTHO05D006867 9.1e-156 554.3 459 62.3
ECA238G0937 Erigeron canadensis HOM05D005865 ORTHO05D006867 1.6e-155 553.5 463 60.3
Hma1.2p1_1100F.1_g257160 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 2.0e-155 553.1 463 60.7
GSVIVG01008710001 Vitis vinifera HOM05D005865 ORTHO05D006867 3.8e-154 548.9 466 62.0
Migut.N03192 Erythranthe guttata HOM05D005865 ORTHO05D006867 7.2e-153 544.7 470 60.0
Cfa014029 Carpinus fangiana HOM05D005865 ORTHO05D006867 1.6e-152 543.5 475 59.8
Rhsim07G0252700 Rhododendron simsii HOM05D005865 ORTHO05D006867 3.6e-152 542.3 515 56.5
MSTRG.1133 Avicennia marina HOM05D005865 ORTHO05D006867 1.2e-150 537.3 470 59.6
Ciclev10000742m.g Citrus clementina HOM05D005865 ORTHO05D006867 1.5e-150 537.0 460 61.3
TAR381G0423 Trochodendron aralioides HOM05D005865 ORTHO05D006867 1.5e-150 537.0 465 60.4
vmacro04388 Vaccinium macrocarpon HOM05D005865 ORTHO05D006867 3.4e-150 535.8 520 55.8
CANSAT56G1424 Cannabis sativa HOM05D005865 ORTHO05D006867 5.7e-150 535.0 480 58.5
CiPaw.07G141800 Carya illinoinensis HOM05D005865 ORTHO05D006867 7.5e-150 534.6 454 61.9
Cc10_g00980 Coffea canephora HOM05D005865 ORTHO05D006867 9.8e-150 534.3 472 59.7
Gohir.A05G181600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 1.7e-149 533.5 454 61.2
Potri.005G247500 Populus trichocarpa HOM05D005865 ORTHO05D006867 2.8e-149 532.7 463 59.4
Atru.chr13.184 Acer truncatum HOM05D005865 ORTHO05D006867 4.9e-149 531.9 463 59.6
Gorai.009G190100 Gossypium raimondii HOM05D005865 ORTHO05D006867 2.4e-148 529.6 454 60.8
SGA_v2.0_scaffold25G11198 Striga asiatica HOM05D005865 ORTHO05D006867 2.0e-147 526.6 469 59.1
Gohir.D05G184600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 2.7e-147 526.2 451 60.5
Nn5g30889 Nelumbo nucifera HOM05D005865 ORTHO05D006867 4.5e-147 525.4 467 57.8
Lalb_Chr03g0033591 Lupinus albus HOM05D005865 ORTHO05D006867 7.8e-147 524.6 468 57.3
Duzib093G0711 Durio zibethinus HOM05D005865 ORTHO05D006867 1.0e-146 524.2 469 59.5
Aqoxy6G01868 Aquilegia oxysepala HOM05D005865 ORTHO05D006867 5.0e-146 521.9 473 56.0
Lj4A15G44 Lonicera japonica HOM05D005865 ORTHO05D006867 5.0e-146 521.9 461 60.3
Manes.18G007801 Manihot esculenta HOM05D005865 ORTHO05D006867 6.6e-146 521.5 479 57.6
arahy.Tifrunner.gnm1.ann1.88Q24L Arachis hypogaea HOM05D005865 ORTHO05D006867 1.1e-145 520.8 461 58.6
ClCG05G015260 Citrullus lanatus HOM05D005865 ORTHO05D006867 7.3e-145 518.1 457 58.2
DCAR_013898 Daucus carota HOM05D005865 ORTHO05D006867 7.3e-145 518.1 489 55.4
HanXRQChr14g0428991 Helianthus annuus HOM05D005865 ORTHO05D006867 1.2e-144 517.3 471 56.5
MD08G1005300 Malus domestica HOM05D005865 ORTHO05D006867 2.1e-144 516.5 455 59.3
PGR031G3425 Punica granatum HOM05D005865 ORTHO05D006867 3.6e-144 515.8 476 57.1
Hund05136 Selenicereus undatus HOM05D005865 ORTHO05D006867 2.3e-143 513.1 453 58.1
Sed0014892 Sechium edule HOM05D005865 ORTHO05D006867 5.2e-143 511.9 459 57.5
Ah.00g000500 Amaranthus hybridus HOM05D005865 ORTHO05D006867 8.9e-143 511.1 473 55.4
RcHm_v2.0_Chr6g0303901 Rosa chinensis HOM05D005865 ORTHO05D006867 2.0e-142 510.0 460 57.8
PSO675G0073 Papaver somniferum HOM05D005865 ORTHO05D006867 1.3e-141 507.3 462 57.4
arahy.Tifrunner.gnm1.ann1.YCE7MW Arachis hypogaea HOM05D005865 ORTHO05D006867 2.2e-141 506.5 460 57.6
CsaV3_4G037060 Cucumis sativus L. HOM05D005865 ORTHO05D006867 2.9e-141 506.1 459 57.1
Prupe.1G357400 Prunus persica HOM05D005865 ORTHO05D006867 3.7e-141 505.8 422 61.4
SalBow6G0433 Salvia bowleyana HOM05D005865 ORTHO05D006867 7.0e-140 501.5 471 57.5
PSO541G4963 Papaver somniferum HOM05D005865 ORTHO05D006867 9.2e-140 501.1 459 56.4
VMungo0647G1107 Vigna mungo HOM05D005865 ORTHO05D006867 1.2e-139 500.7 454 57.5
Psat0s4771g0080 Pisum sativum HOM05D005865 ORTHO05D006867 8.6e-138 494.6 452 57.3
Lj5g0011422 Lotus japonicus HOM05D005865 ORTHO05D006867 1.5e-137 493.8 463 56.8
Phvul.001G001600 Phaseolus vulgaris HOM05D005865 ORTHO05D006867 3.3e-137 492.7 457 57.3
Eucgr.F03532 Eucalyptus grandis HOM05D005865 ORTHO05D006867 3.6e-136 489.2 477 55.3
Glyma.14G222900 Glycine max HOM05D005865 ORTHO05D006867 8.0e-136 488.0 460 55.4
Thhalv10007426m.g Eutrema salsugineum HOM05D005865 ORTHO05D006867 1.5e-134 483.8 471 53.7
CARHR020860 Cardamine hirsuta HOM05D005865 ORTHO05D006867 7.5e-134 481.5 466 54.1
THA.LOC104813767 Tarenaya hassleriana HOM05D005865 ORTHO05D006867 2.2e-133 479.9 472 53.2
BcaC05g25951 Brassica carinata HOM05D005865 ORTHO05D006867 2.9e-133 479.6 459 53.8
C05p19010 Brassica napus HOM05D005865 ORTHO05D006867 4.9e-133 478.8 459 53.8
Carub.0001s1989 Capsella rubella HOM05D005865 ORTHO05D006867 8.3e-133 478.0 463 53.6
Sp1g18130 Schrenkiella parvula HOM05D005865 ORTHO05D006867 1.4e-132 477.2 452 55.3
BraA06t24751Z Brassica rapa HOM05D005865 ORTHO05D006867 2.4e-132 476.5 449 53.9
Aa31LG7G4730 Aethionema arabicum HOM05D005865 ORTHO05D006867 5.4e-132 475.3 449 55.5
BcaB07g32044 Brassica carinata HOM05D005865 ORTHO05D006867 5.4e-132 475.3 467 53.7
HPP92_014547 Vanilla planifolia HOM05D005865 ORTHO05D006867 7.0e-132 474.9 477 54.1
BcaNung03380 Brassica carinata HOM05D005865 ORTHO05D006867 9.2e-132 474.6 455 54.5
C07p23040 Brassica napus HOM05D005865 ORTHO05D006867 9.2e-132 474.6 455 54.5
BolC7t42845H Brassica oleracea HOM05D005865 ORTHO05D006867 9.2e-132 474.6 455 54.5
BolC5t30602H Brassica oleracea HOM05D005865 ORTHO05D006867 1.2e-131 474.2 449 53.9
BraA07t29307Z Brassica rapa HOM05D005865 ORTHO05D006867 1.2e-131 474.2 457 54.5
AT1G20410 Arabidopsis thaliana HOM05D005865 ORTHO05D006867 2.0e-131 473.4 463 53.3
AL1G33330 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 4.6e-131 472.2 452 53.3
TWI36G0296 Tripterygium wilfordii HOM05D005865 ORTHO05D006867 4.6e-131 472.2 452 56.6
COL.COLO4_26054 Corchorus olitorius HOM05D005865 ORTHO05D006867 1.1e-127 461.1 439 56.7
Sc15g0004650 Simmondsia chinensis HOM05D005865 ORTHO05D006867 5.8e-126 455.3 389 60.9
Sabra05G0191400 Salix brachista HOM05D005865 ORTHO05D006867 9.9e-126 454.5 493 51.7
FAN27G0680 Fragaria x ananassa HOM05D005865 ORTHO05D006867 1.3e-125 454.1 518 48.8
ATR0665G248 Amborella trichopoda HOM05D005865 ORTHO05D006867 2.2e-125 453.4 459 51.9
Os04g0561700 Oryza sativa ssp. japonica HOM05D005865 ORTHO05D006867 8.3e-125 451.4 461 51.2
Medtr1g026400 Medicago truncatula HOM05D005865 ORTHO05D006867 4.1e-124 449.1 458 52.6
A07p15800 Brassica napus HOM05D005865 ORTHO05D006867 5.4e-124 448.7 474 51.5
CDE02G0067 Ceratophyllum demersum HOM05D005865 ORTHO05D006867 9.2e-124 448.0 466 51.3
Zm00001eb074060 Zea mays HOM05D005865 ORTHO05D006867 9.2e-124 448.0 473 50.3
Dinv31911 Davidia involucrata HOM05D005865 ORTHO05D006867 1.0e-122 444.5 411 57.9
AL1G33260 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 9.5e-121 438.0 452 51.1
unitig_747.g21718 Utricularia gibba HOM05D005865 ORTHO05D006867 2.4e-116 423.3 472 50.8
A06p16480 Brassica napus HOM05D005865 ORTHO05D006867 1.2e-115 421.0 389 55.8
MELO3C017004.2 Cucumis melo HOM05D005865 ORTHO05D006867 7.8e-115 418.3 462 50.6
AUR62013839 Chenopodium quinoa HOM05D005865 ORTHO05D006867 2.8e-112 409.8 490 47.1
FvH4_2g37810 Fragaria vesca HOM05D005865 ORTHO05D006867 4.7e-112 409.1 415 51.8
Ca_13490_v3 Cicer arietinum L. HOM05D005865 ORTHO05D006867 6.2e-112 408.7 341 61.6
QL02p013522 Quercus lobata HOM05D005865 ORTHO05D006867 1.5e-110 404.1 418 52.9
Hma1.2p1_1100F.1_g257170 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 3.4e-110 402.9 254 73.6
Pp3c20_10980 Physcomitrium patens HOM05D005865 ORTHO05D006867 2.7e-107 393.3 466 47.4
BcaB03g14323 Brassica carinata HOM05D005865 ORTHO05D006867 6.9e-103 378.6 253 69.2
AagrBONN_evm.TU.Sc2ySwM_344.4811 Anthoceros agrestis HOM05D005865 ORTHO05D006867 4.5e-102 375.9 468 45.5
Mapoly0006s0010 Marchantia polymorpha HOM05D005865 ORTHO05D006867 1.8e-95 354.0 459 42.7
A07p15700 Brassica napus HOM05D005865 ORTHO05D006867 2.9e-85 320.1 211 70.1
EL10Ac1g02030 Beta vulgaris HOM05D005865 ORTHO05D006867 2.7e-83 313.5 375 47.5
Haze_22735 Corylus avellana HOM05D005865 ORTHO05D006867 7.9e-83 312.0 306 55.9
SMO364G0210 Selaginella moellendorffii HOM05D005865 ORTHO05D006867 1.3e-82 311.2 253 58.5
SEGI_14934 Sequoiadendron giganteum HOM05D005865 ORTHO05D006867 8.7e-82 308.5 212 68.4
CBR_g81579 Chara braunii HOM05D005865 ORTHO05D006867 5.0e-77 292.7 457 38.7
AUR62036767 Chenopodium quinoa HOM05D005865 ORTHO05D006867 1.4e-76 291.2 347 48.1
BcaC07g42576 Brassica carinata HOM05D005865 ORTHO05D006867 1.5e-65 254.6 246 55.3
PRCOL_00003715 Prasinoderma coloniale HOM05D005865 ORTHO05D006867 3.2e-52 210.3 493 29.4
MCO16G112 Micromonas commoda HOM05D005865 ORTHO05D006867 5.5e-52 209.5 246 42.7
Cpa.g.sc26.238 Carica papaya HOM05D005865 ORTHO05D006867 1.6e-46 191.4 167 58.1
Cpa.g.sc26.237 Carica papaya HOM05D005865 ORTHO05D006867 2.4e-31 141.0 158 47.5
MELO3C035627.2 Cucumis melo HOM05D005865 ORTHO05D006867 1.3e-29 135.2 126 54.0
Rhsim11G0079600 Rhododendron simsii HOM05D005865 ORTHO05D006867 1.2e-27 128.6 123 52.0
A07p15690 Brassica napus HOM05D005865 ORTHO05D006867 3.6e-27 127.1 155 47.1
MD15G1004800 Malus domestica HOM05D005865 ORTHO05D006867 4.7e-27 126.7 105 64.8
Cre12.g506900 Chlamydomonas reinhardtii HOM05D005865 ORTHO05D006867 9.2e-23 112.5 319 27.9
FAN15G0850 Fragaria x ananassa HOM05D005865 ORTHO05D006867 8.6e-21 105.9 126 42.1
Oeu025004.1 Olea europaea HOM05D005865 ORTHO05D006867 5.6e-20 103.2 118 42.4
SEGI_13350 Sequoiadendron giganteum HOM05D005865 ORTHO05D006867 2.8e-19 100.9 160 41.9
Hma1.2p1_1100F.1_g257120 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 1.2e-17 95.5 196 36.7
Cpa.g.sc26.239 Carica papaya HOM05D005865 ORTHO05D006867 2.9e-16 90.9 54 75.9
MELO3C032646.2 Cucumis melo HOM05D005865 ORTHO05D006867 1.6e-14 85.1 101 42.6
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 2.1e-14 84.7 90 47.8
SHI04100 Sapria himalayana HOM05D005865 ORTHO05D006867 3.5e-14 84.0 143 35.0
SHI04101 Sapria himalayana HOM05D005865 ORTHO05D006867 6.6e-13 79.7 159 37.1
MELO3C035121.2 Cucumis melo HOM05D005865 ORTHO05D000044 2.1e-11 74.7 65 56.9
EL10Ac1g02029 Beta vulgaris HOM05D056011 ORTHO05D006867 4.7e-11 73.6 39 82.1
BcaB03g14322 Brassica carinata HOM05D005865 ORTHO05D006867 8.3e-08 62.8 64 43.8
FAN20G0402 Fragaria x ananassa HOM05D005865 ORTHO05D006867 9.2e-07 59.3 68 41.2
Lj2A91G56 Lonicera japonica HOM05D005865 ORTHO05D006867 1.2e-06 58.9 39 66.7


User provided reference genes

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