Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 4.4e-250 867.5 428 100.0
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.2e-228 796.2 433 90.5
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.8e-227 792.3 433 90.5
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 2.6e-226 788.5 433 90.1
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 1.1e-221 773.1 432 88.7
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.9e-205 719.2 409 86.8
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.3e-185 653.3 434 77.4
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 2.9e-169 599.0 428 68.0
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 4.8e-164 581.6 413 68.5
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 8.2e-164 580.9 406 69.5
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 1.8e-163 579.7 409 68.7
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 2.0e-162 576.2 419 67.5
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 2.6e-162 575.9 413 67.1
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 7.7e-162 574.3 402 69.4
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 1.0e-161 573.9 412 67.7
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 1.3e-161 573.5 400 69.0
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.1e-160 570.5 406 69.7
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 5.5e-160 568.2 419 66.3
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 5.5e-160 568.2 395 70.4
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 7.2e-160 567.8 408 68.9
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 7.2e-160 567.8 402 67.7
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.6e-159 565.5 408 66.2
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 2.3e-158 562.8 399 67.7
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 8.8e-158 560.8 408 68.4
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 1.1e-157 560.5 405 66.2
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 7.4e-157 557.8 406 65.3
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 1.3e-156 557.0 418 66.0
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 5.9e-154 548.1 415 66.3
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 2.1e-151 539.7 376 68.1
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.1e-151 539.7 417 64.7
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 6.7e-150 534.6 424 62.0
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 2.4e-147 526.2 412 60.2
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 4.1e-147 525.4 385 63.4
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 4.1e-147 525.4 397 63.2
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 2.7e-146 522.7 397 62.5
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 2.7e-146 522.7 407 60.4
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 1.3e-145 520.4 375 66.7
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 1.7e-145 520.0 407 62.2
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.2e-145 519.6 397 65.7
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 1.9e-144 516.5 395 64.6
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 3.2e-144 515.8 396 63.1
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 2.1e-143 513.1 429 60.4
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 6.1e-143 511.5 391 63.4
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 8.0e-143 511.1 424 59.4
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 5.7e-141 505.0 404 60.4
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.4e-139 500.4 400 62.8
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 2.4e-139 499.6 405 61.7
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 5.4e-139 498.4 405 61.2
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 2.0e-138 496.5 392 60.5
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 2.7e-138 496.1 399 61.7
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 3.5e-138 495.7 410 61.7
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 1.0e-137 494.2 362 64.4
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 8.6e-137 491.1 422 57.6
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 3.3e-136 489.2 402 58.7
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.4e-134 483.8 402 58.2
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 9.8e-133 477.6 400 60.8
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.7e-132 476.9 393 59.3
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 2.8e-132 476.1 392 61.5
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 1.1e-131 474.2 397 57.9
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 2.4e-131 473.0 423 55.3
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 1.2e-130 470.7 402 58.0
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 1.3e-129 467.2 392 60.2
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 2.9e-129 466.1 388 60.3
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 3.3e-128 462.6 411 56.0
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 3.3e-128 462.6 411 56.0
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 5.6e-128 461.8 363 62.5
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 9.5e-128 461.1 400 57.0
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.1e-127 459.9 411 56.9
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 2.3e-126 456.4 392 56.4
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.8e-126 454.9 372 60.5
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 7.5e-125 451.4 370 59.7
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 9.8e-125 451.1 413 55.9
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 3.7e-124 449.1 403 55.6
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 4.9e-124 448.7 338 63.9
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 1.1e-123 447.6 357 59.7
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.2e-123 446.0 409 56.7
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 4.1e-123 445.7 394 57.6
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 4.1e-123 445.7 402 55.0
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 5.4e-123 445.3 394 57.4
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 1.2e-122 444.1 369 57.7
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 4.6e-122 442.2 395 57.5
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 6.0e-122 441.8 395 57.5
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.3e-121 440.7 395 57.5
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 3.0e-121 439.5 392 54.8
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 3.9e-121 439.1 395 53.7
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 4.3e-120 435.6 351 61.3
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.6e-119 433.7 394 57.9
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.1e-118 431.0 392 57.4
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.5e-117 427.2 394 56.6
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 2.0e-117 426.8 400 53.8
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.7e-116 422.5 400 55.5
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 1.6e-114 417.2 419 50.6
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 6.0e-114 415.2 419 50.6
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 2.3e-113 413.3 387 56.8
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 3.9e-113 412.5 389 53.7
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 6.6e-113 411.8 394 51.0
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 8.6e-113 411.4 389 53.7
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.6e-111 407.1 385 54.8
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 2.3e-110 403.3 411 52.6
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 2.3e-110 403.3 387 54.8
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 4.0e-110 402.5 387 54.8
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 5.2e-110 402.1 408 53.7
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 8.9e-110 401.4 408 53.4
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 1.2e-109 401.0 410 53.9
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.4e-109 399.4 379 54.6
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 7.5e-109 398.3 393 52.9
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.9e-108 396.4 402 53.2
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 4.9e-108 395.6 396 53.5
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 2.4e-107 393.3 394 51.5
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 9.2e-107 391.3 413 51.6
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 1.2e-106 391.0 387 52.7
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 4.6e-106 389.0 404 50.0
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 5.1e-105 385.6 390 52.8
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 1.1e-104 384.4 381 52.0
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.9e-104 383.6 393 51.9
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 2.5e-104 383.3 390 51.3
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 5.6e-104 382.1 393 51.1
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 5.6e-104 382.1 394 51.0
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 7.3e-104 381.7 390 51.5
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 9.5e-104 381.3 390 51.5
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 9.5e-104 381.3 390 51.5
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 2.8e-103 379.8 354 53.4
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 8.1e-103 378.3 381 51.2
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.4e-102 377.5 398 52.0
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 1.8e-102 377.1 382 52.4
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 2.4e-102 376.7 390 49.5
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 1.2e-101 374.4 371 51.8
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 1.2e-101 374.4 406 51.2
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 2.0e-101 373.6 388 48.7
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 2.1e-98 363.6 335 56.4
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 2.7e-98 363.2 303 59.4
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 3.5e-98 362.8 390 47.4
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 6.0e-98 362.1 397 46.1
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 7.3e-96 355.1 404 44.1
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 2.8e-95 353.2 372 48.1
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 2.2e-92 343.6 384 49.2
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 2.9e-92 343.2 392 47.4
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 6.6e-89 332.0 289 58.5
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 8.7e-89 331.6 397 42.1
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 3.3e-88 329.7 407 44.2
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 2.4e-86 323.6 402 45.3
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 2.4e-86 323.6 365 45.5
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 5.4e-83 312.4 279 58.1
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.5e-80 304.3 361 44.3
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 4.8e-79 299.3 421 41.8
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 6.2e-79 298.9 361 44.9
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 3.1e-78 296.6 369 43.1
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 3.2e-75 286.6 380 42.1
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 7.1e-75 285.4 377 40.3
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 1.3e-71 274.6 296 48.6
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.3e-63 248.1 295 48.8
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 5.3e-62 242.7 232 54.7
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 1.4e-57 228.0 311 40.8
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 2.4e-54 217.2 236 49.6
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 4.2e-51 206.5 165 61.8
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.5e-45 188.0 173 58.4
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 1.5e-45 188.0 181 54.1
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 7.7e-45 185.7 179 53.6
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 7.2e-43 179.1 347 33.7
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 5.2e-41 172.9 185 49.2
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 2.0e-37 161.0 133 55.6
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 4.5e-37 159.8 129 59.7
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.6e-34 151.4 302 33.8
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 6.1e-34 149.4 151 49.7
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 6.1e-34 149.4 128 60.2
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.5e-32 144.8 202 40.1
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 4.4e-32 143.3 113 53.1
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 2.7e-29 134.0 350 30.0
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 5.2e-25 119.8 298 31.5
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 9.5e-19 99.0 71 62.0
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 8.9e-17 92.4 62 64.5
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 7.5e-08 62.8 114 37.7


User provided reference genes

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