Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.4e-193 679.5 341 100.0
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 5.0e-180 634.4 341 91.8
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.8e-175 618.6 341 91.2
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.8e-166 589.3 316 91.8
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 7.2e-163 577.4 316 91.5
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 5.2e-161 571.2 339 86.1
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 8.6e-148 527.3 341 77.1
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 4.3e-147 525.0 341 77.1
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 2.8e-146 522.3 344 75.6
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 5.8e-144 514.6 344 74.7
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 1.3e-143 513.5 341 74.8
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.7e-143 513.1 344 75.3
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 1.6e-141 506.5 332 76.2
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 6.0e-141 504.6 330 75.8
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.1e-139 500.4 332 75.0
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.1e-137 493.8 334 74.3
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.4e-137 493.4 336 73.2
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 3.1e-137 492.3 325 76.3
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 3.1e-137 492.3 331 74.6
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 5.2e-137 491.5 330 74.8
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 1.5e-136 490.0 330 74.5
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.6e-136 489.2 326 73.9
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 4.4e-136 488.4 334 73.1
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 7.5e-136 487.6 348 70.4
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 9.8e-136 487.3 326 73.0
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 9.8e-136 487.3 333 74.5
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 9.8e-136 487.3 328 73.8
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.7e-135 486.5 326 73.6
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 4.9e-135 485.0 326 73.9
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 4.9e-135 485.0 326 73.6
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 6.4e-135 484.6 335 71.6
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 6.4e-135 484.6 335 71.6
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 8.3e-135 484.2 312 78.2
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 8.3e-135 484.2 332 73.5
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.1e-134 483.8 333 73.3
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.1e-134 483.8 340 73.2
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.9e-134 483.0 326 73.3
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 2.4e-134 482.6 328 72.9
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 2.4e-134 482.6 371 66.8
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.2e-134 482.3 340 72.6
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 3.2e-134 482.3 350 71.1
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 5.4e-134 481.5 326 72.7
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 7.1e-134 481.1 326 73.0
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 9.2e-134 480.7 325 73.2
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.1e-133 479.6 325 72.9
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 2.7e-133 479.2 336 72.0
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 2.7e-133 479.2 328 72.3
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.5e-133 478.8 325 72.9
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.5e-133 478.8 335 71.0
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 4.6e-133 478.4 326 73.9
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 6.0e-133 478.0 332 72.6
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 6.0e-133 478.0 334 72.8
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.0e-132 477.2 336 72.3
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.7e-132 476.5 325 73.2
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 6.6e-132 474.6 332 72.9
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.1e-131 473.8 341 71.0
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 5.6e-131 471.5 329 70.5
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 9.5e-131 470.7 332 71.4
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 6.2e-130 468.0 340 70.3
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.2e-128 463.8 321 71.3
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 2.6e-128 462.6 328 68.6
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 2.6e-128 462.6 334 69.2
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 3.4e-128 462.2 355 68.5
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 3.4e-128 462.2 325 70.8
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 4.4e-128 461.8 321 70.7
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 9.9e-128 460.7 332 72.3
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.7e-127 459.9 332 69.3
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.7e-127 459.9 325 70.5
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.7e-127 459.9 321 71.7
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 2.2e-127 459.5 325 69.2
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 2.2e-127 459.5 324 70.7
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 2.9e-127 459.1 322 70.5
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 3.7e-127 458.8 308 75.3
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 4.9e-127 458.4 321 70.7
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 6.4e-127 458.0 331 68.0
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 6.4e-127 458.0 306 74.5
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 6.4e-127 458.0 331 68.6
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.1e-126 457.2 321 70.1
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 1.1e-126 457.2 369 67.2
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 1.4e-126 456.8 332 69.0
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.4e-126 456.8 321 70.7
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 1.9e-126 456.4 357 65.3
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.4e-126 456.1 321 71.0
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 2.4e-126 456.1 329 68.4
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.4e-126 456.1 327 70.6
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 3.2e-126 455.7 327 70.0
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 4.1e-126 455.3 327 70.0
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 5.4e-126 454.9 324 70.1
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 7.1e-126 454.5 321 70.7
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 9.2e-126 454.1 325 70.8
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.2e-125 453.8 322 69.9
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.6e-125 453.4 313 73.2
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 2.1e-125 453.0 325 67.4
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 2.1e-125 453.0 345 67.0
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 2.7e-125 452.6 333 68.8
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.7e-125 452.6 321 71.0
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 3.5e-125 452.2 333 68.8
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 3.5e-125 452.2 322 69.6
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 6.0e-125 451.4 332 68.7
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.0e-124 450.7 315 71.7
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.3e-124 450.3 334 68.0
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 3.9e-124 448.7 327 68.8
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 5.1e-124 448.4 339 67.3
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 6.6e-124 448.0 342 67.0
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 3.3e-123 445.7 307 73.6
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 7.3e-123 444.5 332 65.1
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 9.6e-123 444.1 325 66.5
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.2e-122 443.7 324 69.1
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.2e-122 443.7 325 69.2
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 2.1e-122 443.0 334 67.4
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.8e-122 442.6 331 67.1
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 1.8e-121 439.9 335 66.9
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 8.9e-121 437.6 325 68.3
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.2e-120 437.2 323 67.8
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.6e-120 436.0 310 70.6
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.2e-117 427.2 320 67.8
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 3.5e-117 425.6 326 66.9
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 3.5e-117 425.6 339 64.6
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.3e-116 422.9 386 58.0
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.1e-115 420.6 323 66.6
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 5.6e-115 418.3 319 66.8
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 5.3e-113 411.8 321 66.0
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 7.6e-112 407.9 534 45.9
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 8.4e-111 404.4 331 63.7
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.9e-110 403.3 210 94.8
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.6e-109 400.2 265 74.0
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 6.6e-108 394.8 314 62.4
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 4.2e-102 375.6 253 72.7
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 5.5e-102 375.2 324 61.4
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 3.5e-101 372.5 265 70.9
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 6.2e-98 361.7 264 69.7
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.1e-97 360.9 331 57.7
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 6.9e-97 358.2 319 56.7
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 8.2e-90 334.7 227 73.6
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.2e-88 330.9 319 51.7
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.6e-88 329.7 206 78.2
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.4e-86 323.9 287 62.0
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 1.3e-84 317.4 288 55.6
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 5.1e-84 315.5 209 72.7
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 2.8e-82 309.7 215 73.5
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.1e-81 307.8 207 73.9
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 2.5e-78 296.6 351 51.0
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 3.0e-68 263.1 161 79.5
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 6.7e-68 261.9 379 41.7
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 6.1e-61 238.8 163 70.6
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.0e-60 238.0 170 71.8
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.5e-59 234.2 162 71.6
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 7.0e-57 225.3 218 57.8
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.7e-56 223.4 161 68.9
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 1.6e-53 214.2 174 64.4
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.2e-48 198.0 254 45.7
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 1.8e-44 184.1 325 40.0
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.1e-38 164.9 121 67.8
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 7.3e-38 162.2 193 48.7
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 1.2e-32 144.8 112 67.0
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 7.3e-30 135.6 258 34.5
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 5.2e-28 129.4 253 34.0
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 2.4e-25 120.6 384 29.2
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 7.8e-24 115.5 116 51.7
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.0e-23 115.2 61 86.9
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 7.3e-22 109.0 121 47.9
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.9e-18 96.3 57 77.2
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 6.6e-15 85.9 65 67.7
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 1.1e-14 85.1 63 68.3
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.6e-13 80.1 56 67.9
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 8.9e-12 75.5 49 71.4
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 9.9e-11 72.0 86 46.5


User provided reference genes

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