Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 3.2e-56 221.5 108 100.0
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 8.2e-36 153.7 84 89.3
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 3.1e-35 151.8 88 83.0
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 3.1e-35 151.8 88 83.0
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 4.1e-35 151.4 88 83.0
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 6.9e-35 150.6 88 81.8
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 3.4e-34 148.3 88 79.5
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 4.5e-34 147.9 88 78.4
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 4.5e-34 147.9 88 79.5
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 2.2e-33 145.6 85 81.2
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.2e-33 145.6 85 83.5
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 2.9e-33 145.2 88 77.3
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 3.8e-33 144.8 88 77.3
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 3.8e-33 144.8 88 77.3
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.0e-33 144.4 88 78.4
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.0e-33 144.4 88 78.4
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 6.5e-33 144.1 100 71.0
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 6.5e-33 144.1 88 77.3
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.1e-32 143.3 88 77.3
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.1e-32 143.3 88 76.1
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 1.1e-32 143.3 88 76.1
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 1.9e-32 142.5 88 77.3
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 3.2e-32 141.7 88 76.1
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 4.2e-32 141.4 88 75.0
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 4.2e-32 141.4 88 75.0
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 5.5e-32 141.0 85 78.8
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 7.2e-32 140.6 88 72.7
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 9.3e-32 140.2 85 76.5
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 9.3e-32 140.2 88 75.0
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 9.3e-32 140.2 88 73.9
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.2e-31 139.8 85 76.5
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.6e-31 139.4 85 76.5
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.6e-31 139.4 88 72.7
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.6e-31 139.4 85 77.6
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 2.1e-31 139.0 88 73.9
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 2.1e-31 139.0 88 73.9
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 2.1e-31 139.0 88 72.7
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 2.1e-31 139.0 88 72.7
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 2.7e-31 138.7 88 73.9
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 2.7e-31 138.7 88 72.7
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.7e-31 138.7 88 73.9
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 2.7e-31 138.7 88 72.7
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 2.7e-31 138.7 88 75.0
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 2.7e-31 138.7 100 67.0
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 2.7e-31 138.7 88 72.7
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 2.7e-31 138.7 88 75.0
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 3.6e-31 138.3 88 73.9
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 3.6e-31 138.3 88 73.9
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 3.6e-31 138.3 88 71.6
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 3.6e-31 138.3 88 73.9
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 3.6e-31 138.3 88 72.7
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 3.6e-31 138.3 88 72.7
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 4.6e-31 137.9 85 76.5
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 4.6e-31 137.9 88 72.7
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 4.6e-31 137.9 88 72.7
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 4.6e-31 137.9 85 74.1
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 6.1e-31 137.5 85 74.1
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 6.1e-31 137.5 88 73.9
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 6.1e-31 137.5 88 71.6
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.1e-31 137.5 88 71.6
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.1e-31 137.5 88 71.6
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 6.1e-31 137.5 88 73.9
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 7.9e-31 137.1 85 74.1
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 7.9e-31 137.1 85 76.5
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 7.9e-31 137.1 88 72.7
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.0e-30 136.7 85 72.9
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.0e-30 136.7 88 72.7
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 1.0e-30 136.7 88 72.7
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 1.0e-30 136.7 88 71.6
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 1.0e-30 136.7 88 72.7
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 1.4e-30 136.3 88 70.5
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 1.8e-30 136.0 95 67.4
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.8e-30 136.0 88 72.7
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 1.8e-30 136.0 88 71.6
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 1.8e-30 136.0 85 76.5
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 2.3e-30 135.6 85 74.1
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 2.3e-30 135.6 88 71.6
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 2.3e-30 135.6 88 71.6
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 2.3e-30 135.6 88 71.6
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 2.3e-30 135.6 88 71.6
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 3.0e-30 135.2 88 71.6
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 3.9e-30 134.8 88 72.7
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 5.1e-30 134.4 91 68.1
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 5.1e-30 134.4 95 67.4
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 5.1e-30 134.4 95 67.4
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 5.1e-30 134.4 95 67.4
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 5.1e-30 134.4 95 67.4
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 5.1e-30 134.4 85 74.1
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 5.1e-30 134.4 88 71.6
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 5.1e-30 134.4 85 71.8
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 6.7e-30 134.0 88 73.9
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 6.7e-30 134.0 95 66.3
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 6.7e-30 134.0 95 66.3
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 6.7e-30 134.0 95 66.3
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 6.7e-30 134.0 95 66.3
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 6.7e-30 134.0 95 66.3
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 6.7e-30 134.0 95 66.3
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 6.7e-30 134.0 95 66.3
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 6.7e-30 134.0 88 70.5
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 6.7e-30 134.0 88 72.7
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 6.7e-30 134.0 88 69.3
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.8e-30 133.7 88 69.3
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.1e-29 133.3 85 71.8
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 1.5e-29 132.9 88 70.5
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 1.5e-29 132.9 88 68.2
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 1.5e-29 132.9 88 69.3
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 1.9e-29 132.5 88 69.3
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 2.5e-29 132.1 88 70.5
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 3.3e-29 131.7 88 69.3
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 4.3e-29 131.3 95 66.3
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 4.3e-29 131.3 88 69.3
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 4.3e-29 131.3 88 69.3
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 4.3e-29 131.3 88 69.3
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 5.7e-29 131.0 86 70.9
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 5.7e-29 131.0 88 68.2
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 5.7e-29 131.0 85 71.8
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 7.4e-29 130.6 88 68.2
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 7.4e-29 130.6 85 69.4
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 7.4e-29 130.6 88 68.2
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 9.7e-29 130.2 88 68.2
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 9.7e-29 130.2 88 68.2
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 1.7e-28 129.4 88 68.2
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 2.8e-28 128.6 88 69.3
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 3.7e-28 128.3 88 67.0
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 1.4e-27 126.3 88 64.8
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 3.1e-27 125.2 85 68.2
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 5.3e-27 124.4 88 67.0
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 5.9e-26 120.9 110 57.3
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 7.7e-26 120.6 88 67.0
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.0e-25 120.2 76 75.0
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 3.8e-25 118.2 85 65.9
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 5.5e-24 114.4 85 62.4
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.8e-22 109.4 91 56.0
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 5.7e-21 104.4 91 56.0
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 4.8e-20 101.3 88 58.0
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 2.6e-18 95.5 62 71.0
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 4.5e-18 94.7 98 51.0
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 1.0e-17 93.6 57 78.9
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 8.0e-15 84.0 89 46.1
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.1e-13 80.1 64 68.8
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 2.6e-13 79.0 91 45.1
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.3e-13 78.6 41 90.2
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 7.4e-13 77.4 86 50.0
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 3.7e-12 75.1 50 72.0
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 6.3e-12 74.3 45 75.6
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 2.6e-10 68.9 44 72.7
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 2.6e-10 68.9 44 72.7
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 4.7e-07 58.2 96 35.4


User provided reference genes

Program Settings