Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G298.29 Capsicum annuum HOM05D000225 ORTHO05D002520 3.8e-125 451.4 216 100.0
PGSC0003DMG400037297 Solanum tuberosum HOM05D000225 ORTHO05D002520 3.1e-95 352.1 216 77.8
Sopen06g026910 Solanum pennellii HOM05D000225 ORTHO05D002520 2.6e-65 252.7 207 58.5
Solyc06g069610.1 Solanum lycopersicum HOM05D000225 ORTHO05D002520 9.8e-65 250.8 207 58.5
CAN.G587.20 Capsicum annuum HOM05D000225 ORTHO05D002520 4.9e-64 248.4 206 58.7
Peaxi162Scf00013g00053 Petunia axillaris HOM05D000225 ORTHO05D002520 4.6e-62 241.9 205 58.0
Cc11_g15550 Coffea canephora HOM05D000225 ORTHO05D002520 3.3e-60 235.7 186 60.2
Nitab4.5_0006673g0100 Nicotiana tabacum HOM05D000225 ORTHO05D002520 2.6e-57 226.1 202 56.9
Dinv24806 Davidia involucrata HOM05D000225 ORTHO05D002520 3.2e-55 219.2 182 56.0
Actinidia37418 Actinidia chinensis HOM05D000225 ORTHO05D002520 2.1e-54 216.5 211 55.5
Atru.chr9.2548 Acer truncatum HOM05D000225 ORTHO05D002520 8.6e-53 211.1 206 49.5
Manes.06G108500 Manihot esculenta HOM05D000225 ORTHO05D002520 8.6e-53 211.1 207 50.2
Oeu059915.1 Olea europaea HOM05D000225 ORTHO05D002520 1.5e-52 210.3 206 51.5
Ciclev10033617m.g Citrus clementina HOM05D000225 ORTHO05D002520 2.5e-52 209.5 215 49.8
TAR371G0870 Trochodendron aralioides HOM05D000225 ORTHO05D002520 7.3e-52 208.0 208 50.5
Potri.015G081601 Populus trichocarpa HOM05D000225 ORTHO05D002520 1.6e-51 206.8 183 51.9
Potri.T125208 Populus trichocarpa HOM05D000225 ORTHO05D002520 1.6e-51 206.8 183 51.9
TWI39G0501 Tripterygium wilfordii HOM05D000225 ORTHO05D002520 1.6e-51 206.8 182 53.3
Hma1.2p1_0223F.1_g094140 Hydrangea macrophylla HOM05D000225 ORTHO05D002520 2.1e-51 206.5 208 52.4
Lj6A811T76 Lonicera japonica HOM05D000225 ORTHO05D002520 2.6e-49 199.5 180 51.7
CSS0023507 Camellia sinensis var. sinensis HOM05D000225 ORTHO05D002520 1.3e-48 197.2 213 49.3
Thecc.03G022500 Theobroma cacao HOM05D000225 ORTHO05D002520 1.1e-47 194.1 191 46.6
DCAR_026528 Daucus carota HOM05D000740 ORTHO05D003236 1.2e-46 190.7 214 48.1
Prupe.1G247900 Prunus persica HOM05D000225 ORTHO05D002520 2.7e-46 189.5 216 46.8
Rhsim12G0112300 Rhododendron simsii HOM05D000225 ORTHO05D002520 6.0e-46 188.3 201 51.2
COL.COLO4_30151 Corchorus olitorius HOM05D000225 ORTHO05D002520 1.0e-45 187.6 180 46.7
Eucgr.H02518 Eucalyptus grandis HOM05D000225 ORTHO05D002520 2.3e-45 186.4 210 43.3
Eucgr.B00237 Eucalyptus grandis HOM05D000225 ORTHO05D002520 1.1e-44 184.1 179 51.4
HanXRQChr06g0174451 Helianthus annuus HOM05D000225 ORTHO05D002520 3.3e-44 182.6 205 44.4
DCAR_005851 Daucus carota HOM05D000225 ORTHO05D002520 4.3e-44 182.2 212 44.3
Glyma.01G027100 Glycine max HOM05D000225 ORTHO05D002520 5.6e-44 181.8 213 43.7
Glyma.08G283300 Glycine max HOM05D000225 ORTHO05D002520 5.6e-44 181.8 206 45.6
Manes.13G026000 Manihot esculenta HOM05D000225 ORTHO05D002520 7.3e-44 181.4 214 47.2
CANSAT01G1082 Cannabis sativa HOM05D000225 ORTHO05D002520 1.2e-43 180.6 217 42.9
Haze_12234 Corylus avellana HOM05D000225 ORTHO05D002520 4.7e-43 178.7 216 44.9
MBI10_g00732_MAGBIO Magnolia biondii HOM05D000225 ORTHO05D002520 6.2e-43 178.3 184 47.8
Lsat_1_v5_gn_3_28821 Lactuca sativa HOM05D000225 ORTHO05D002520 1.1e-42 177.6 178 48.3
Migut.L01480 Erythranthe guttata HOM05D000225 ORTHO05D002520 1.4e-42 177.2 179 48.0
FAN22G2293 Fragaria x ananassa HOM05D000225 ORTHO05D002520 2.4e-42 176.4 215 43.3
MD16G1098600 Malus domestica HOM05D000225 ORTHO05D002520 4.0e-42 175.6 215 42.8
Prupe.5G168000 Prunus persica HOM05D000225 ORTHO05D002520 4.0e-42 175.6 207 45.4
GSVIVG01004091001 Vitis vinifera HOM05D000225 ORTHO05D002520 4.0e-42 175.6 181 48.1
Aqoxy3G01157 Aquilegia oxysepala HOM05D000225 ORTHO05D002520 6.9e-42 174.9 196 48.5
Cpa.g.sc33.2 Carica papaya HOM05D000225 ORTHO05D002520 4.4e-41 172.2 213 42.3
Gohir.D02G159800 Gossypium hirsutum HOM05D000225 ORTHO05D002520 4.4e-41 172.2 207 42.5
FAN12G1195 Fragaria x ananassa HOM05D000740 ORTHO05D002520 5.8e-41 171.8 208 43.8
FAN12G1520 Fragaria x ananassa HOM05D000740 ORTHO05D002520 5.8e-41 171.8 208 43.8
Manes.12G024400 Manihot esculenta HOM05D000225 ORTHO05D002520 5.8e-41 171.8 215 44.2
FvH4_4g25871 Fragaria vesca HOM05D000225 ORTHO05D002520 9.9e-41 171.0 208 43.8
FAN07G0546 Fragaria x ananassa HOM05D000740 ORTHO05D002520 9.9e-41 171.0 211 44.5
FAN07G1090 Fragaria x ananassa HOM05D000740 ORTHO05D002520 9.9e-41 171.0 211 44.5
FAN17G1047 Fragaria x ananassa HOM05D000740 ORTHO05D002520 1.3e-40 170.6 216 42.1
Gorai.005G179900 Gossypium raimondii HOM05D000225 ORTHO05D002520 1.7e-40 170.2 207 42.0
Thecc.02G257100 Theobroma cacao HOM05D000225 ORTHO05D002520 2.9e-40 169.5 180 47.8
COL.COLO4_24245 Corchorus olitorius HOM05D006585 ORTHO05D002520 3.8e-40 169.1 179 44.7
Lj2g0016247 Lotus japonicus HOM05D000225 ORTHO05D002520 3.8e-40 169.1 213 42.3
Phvul.002G059500 Phaseolus vulgaris HOM05D000225 ORTHO05D002520 3.8e-40 169.1 212 40.1
RcHm_v2.0_Chr4g0433311 Rosa chinensis HOM05D000225 ORTHO05D002520 6.4e-40 168.3 206 42.7
VMungo1215G0379 Vigna mungo HOM05D000225 ORTHO05D002520 8.4e-40 167.9 212 40.1
Gohir.A03G136600 Gossypium hirsutum HOM05D000225 ORTHO05D002520 1.1e-39 167.5 207 42.0
VMungo0251G0993 Vigna mungo HOM05D000225 ORTHO05D002520 1.1e-39 167.5 209 44.0
Atru.chr11.2119 Acer truncatum HOM05D000225 ORTHO05D002520 1.9e-39 166.8 179 43.0
Atru.chr11.2135 Acer truncatum HOM05D000225 ORTHO05D002520 4.2e-39 165.6 220 39.5
MD06G1169200 Malus domestica HOM05D000225 ORTHO05D002520 7.1e-39 164.9 181 45.3
Lj9A444G106 Lonicera japonica HOM05D000225 ORTHO05D002520 1.2e-38 164.1 153 49.7
PGR119G1031 Punica granatum HOM05D000225 ORTHO05D002520 1.2e-38 164.1 208 42.3
Aqoxy3G01156 Aquilegia oxysepala HOM05D000225 ORTHO05D002520 3.5e-38 162.5 207 44.0
Lalb_Chr16g0382021 Lupinus albus HOM05D000225 ORTHO05D002520 4.6e-38 162.2 206 40.3
MBI16_g23850_MAGBIO Magnolia biondii HOM05D000225 ORTHO05D002520 4.6e-38 162.2 206 43.7
Phvul.003G063700 Phaseolus vulgaris HOM05D000225 ORTHO05D002520 4.6e-38 162.2 204 42.2
Duzib251G0491 Durio zibethinus HOM05D000225 ORTHO05D002520 1.0e-37 161.0 206 44.7
Medtr5g033490 Medicago truncatula HOM05D000225 ORTHO05D002520 1.1e-36 157.5 210 41.0
Nitab4.5_0003021g0010 Nicotiana tabacum HOM05D000225 ORTHO05D002520 1.1e-36 157.5 122 65.6
Sabra08G0141900 Salix brachista HOM05D000225 ORTHO05D002520 1.9e-36 156.8 209 41.6
Lj4g0021993 Lotus japonicus HOM05D000225 ORTHO05D002520 4.3e-36 155.6 207 43.5
TPR.G38785 Trifolium pratense HOM05D000225 ORTHO05D002520 4.3e-36 155.6 206 41.3
Psat2g094040 Pisum sativum HOM05D000225 ORTHO05D002520 7.3e-36 154.8 212 40.1
FvH4_5g05950 Fragaria vesca HOM05D000225 ORTHO05D002520 1.6e-35 153.7 209 41.6
FAN18G4107 Fragaria x ananassa HOM05D000225 ORTHO05D002520 2.1e-35 153.3 209 41.6
FAN08G1117 Fragaria x ananassa HOM05D000225 ORTHO05D002520 2.4e-34 149.8 209 40.7
FAN13G0456 Fragaria x ananassa HOM05D000225 ORTHO05D002520 2.0e-33 146.7 209 40.7
Eucgr.B00236 Eucalyptus grandis HOM05D000225 ORTHO05D002520 2.6e-33 146.4 179 43.0
HanXRQChr05g0154581 Helianthus annuus HOM05D000225 ORTHO05D002520 4.5e-33 145.6 208 37.5
ECA246G1268 Erigeron canadensis HOM05D000225 ORTHO05D009144 7.6e-33 144.8 181 40.3
MSTRG.572 Avicennia marina HOM05D000225 ORTHO05D002520 9.9e-33 144.4 148 48.0
arahy.Tifrunner.gnm1.ann1.7J5ZWH Arachis hypogaea HOM05D000225 ORTHO05D002520 3.8e-32 142.5 218 36.2
arahy.Tifrunner.gnm1.ann1.6V1TUE Arachis hypogaea HOM05D000225 ORTHO05D002520 8.4e-32 141.4 218 36.2
Lsat_1_v5_gn_5_15880 Lactuca sativa HOM05D000225 ORTHO05D002520 7.1e-31 138.3 210 36.7
CsaV3_5G031250 Cucumis sativus L. HOM05D000225 ORTHO05D002520 1.6e-30 137.1 184 41.3
arahy.Tifrunner.gnm1.ann1.REE5L6 Arachis hypogaea HOM05D000225 ORTHO05D002520 5.1e-29 132.1 214 36.9
FAN04G2503 Fragaria x ananassa HOM05D000225 ORTHO05D002520 5.1e-29 132.1 209 38.3
arahy.Tifrunner.gnm1.ann1.P7CPN3 Arachis hypogaea HOM05D000225 ORTHO05D002520 6.7e-29 131.7 214 36.9
MD13G1097500 Malus domestica HOM05D000225 ORTHO05D002520 5.6e-28 128.6 176 41.5
MELO3C011965.2 Cucumis melo HOM05D000225 ORTHO05D002520 1.3e-27 127.5 211 34.6
ATR0585G088 Amborella trichopoda HOM05D000225 ORTHO05D002520 3.6e-27 125.9 183 39.3
Sed0021349 Sechium edule HOM05D000225 ORTHO05D002520 6.2e-27 125.2 214 36.9
ClCG05G025640 Citrullus lanatus HOM05D000225 ORTHO05D002520 1.5e-25 120.6 172 41.3
PSO017G6892 Papaver somniferum HOM05D000225 ORTHO05D002520 2.9e-24 116.3 109 49.5
TAR629G3395 Trochodendron aralioides HOM05D000225 ORTHO05D002520 3.2e-23 112.8 105 49.5
HPP92_006406 Vanilla planifolia HOM05D000225 ORTHO05D002520 1.3e-16 90.9 168 31.5
Sabra15G0105500 Salix brachista HOM05D000805 ORTHO05D000624 1.9e-15 87.0 83 48.2
Zm00001eb342090 Zea mays HOM05D000225 ORTHO05D002520 2.5e-15 86.7 109 40.4
Ca_04581_v3 Cicer arietinum L. HOM05D000225 ORTHO05D002520 3.0e-13 79.7 102 39.2
Haze_08781 Corylus avellana HOM05D000225 ORTHO05D002520 3.3e-12 76.3 67 53.7
Cc00_g21990 Coffea canephora HOM05D000302 ORTHO05D000334 4.8e-11 72.4 63 49.2
Cfa012229 Carpinus fangiana HOM05D065004 ORTHO05D002520 8.2e-11 71.6 80 51.2
Potri.008G187500 Populus trichocarpa HOM05D000225 ORTHO05D002520 1.4e-10 70.9 66 50.0
SEGI_40182 Sequoiadendron giganteum HOM05D000013 ORTHO05D384511 2.6e-09 66.6 181 25.4
ECA246G2324 Erigeron canadensis HOM05D000225 ORTHO05D002520 1.4e-07 60.8 59 44.1
SEGI_31176 Sequoiadendron giganteum HOM05D000225 ORTHO05D002520 1.9e-07 60.5 214 24.3
SEGI_19066 Sequoiadendron giganteum HOM05D000225 ORTHO05D002520 4.2e-07 59.3 179 24.6
TAR383G0597 Trochodendron aralioides HOM05D000225 ORTHO05D002520 4.2e-07 59.3 206 25.2


User provided reference genes

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