Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 8.1e-121 437.2 236 100.0
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.2e-119 433.3 236 98.7
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 2.9e-110 402.1 209 99.5
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.5e-98 363.2 209 87.1
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.1e-97 359.4 209 85.6
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 4.0e-96 355.1 209 88.0
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 6.5e-86 321.2 210 81.4
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 6.5e-86 321.2 210 81.9
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.1e-85 320.5 210 79.5
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 2.7e-68 262.7 213 61.5
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 3.5e-63 245.7 211 57.3
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 3.8e-62 242.3 211 56.9
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 6.5e-62 241.5 212 58.5
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 1.1e-61 240.7 211 59.2
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 2.5e-61 239.6 211 57.3
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 5.5e-61 238.4 211 57.8
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 7.2e-61 238.0 211 56.4
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 7.2e-61 238.0 211 55.9
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.2e-60 237.3 211 55.9
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 1.1e-58 230.7 199 61.3
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 5.7e-58 228.4 211 55.5
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.2e-57 226.5 211 54.0
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 3.1e-56 222.6 211 52.1
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 1.6e-55 220.3 203 53.7
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 1.6e-55 220.3 211 51.7
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.6e-55 219.5 211 52.6
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 5.9e-55 218.4 211 53.6
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.0e-54 217.6 201 53.2
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.9e-54 216.1 211 53.1
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.1e-53 214.2 211 53.1
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 1.9e-53 213.4 211 53.6
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 3.2e-53 212.6 211 52.1
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.2e-52 210.7 203 54.2
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.2e-52 210.7 207 52.2
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.2e-52 210.7 213 53.1
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 1.2e-52 210.7 207 52.2
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 2.7e-52 209.5 207 52.2
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 8.0e-52 208.0 202 51.5
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 1.4e-51 207.2 211 50.2
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.4e-51 207.2 211 49.8
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 1.4e-51 207.2 213 52.1
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 2.3e-51 206.5 124 85.5
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 2.0e-50 203.4 211 49.3
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 3.4e-50 202.6 200 51.5
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 3.4e-50 202.6 211 50.7
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 4.4e-50 202.2 211 49.3
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 7.5e-50 201.4 211 50.7
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 1.4e-48 197.2 203 50.2
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 1.4e-48 197.2 171 59.1
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 5.4e-48 195.3 211 48.3
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 9.1e-48 194.5 211 47.4
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 2.0e-47 193.4 211 46.9
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 2.0e-47 193.4 211 48.8
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.7e-47 193.0 200 49.0
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 4.5e-47 192.2 200 48.0
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 5.9e-47 191.8 173 54.9
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 7.7e-47 191.4 212 47.6
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 1.0e-46 191.0 211 48.8
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 1.7e-46 190.3 211 47.4
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.7e-46 190.3 190 50.0
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 2.2e-46 189.9 171 56.1
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 3.8e-46 189.1 201 48.8
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 5.0e-46 188.7 203 48.8
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 6.5e-46 188.3 201 48.3
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 1.1e-45 187.6 212 47.2
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.9e-45 186.8 201 43.8
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.2e-45 186.0 200 46.0
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 3.2e-45 186.0 212 44.8
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 3.2e-45 186.0 202 47.5
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 4.2e-45 185.7 212 46.7
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 4.2e-45 185.7 201 47.8
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 5.5e-45 185.3 201 50.2
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.6e-44 182.6 219 43.8
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 6.1e-44 181.8 203 44.8
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 1.0e-43 181.0 217 45.2
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 1.0e-43 181.0 171 52.6
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 1.8e-43 180.3 183 48.6
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 8.8e-43 177.9 213 44.6
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 2.0e-42 176.8 211 44.5
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 7.5e-42 174.9 211 44.5
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 9.8e-42 174.5 222 41.9
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 9.8e-42 174.5 222 41.9
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 9.8e-42 174.5 211 44.1
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.8e-41 172.9 211 43.6
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 2.8e-41 172.9 204 47.5
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.1e-40 171.0 202 45.5
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.4e-40 170.6 214 41.1
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 4.1e-40 169.1 215 41.9
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 7.0e-40 168.3 212 43.4
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 1.2e-39 167.5 212 42.9
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-39 167.5 212 42.9
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-39 167.5 212 42.9
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 1.6e-39 167.2 213 46.0
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.7e-39 166.4 212 42.5
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 3.5e-39 166.0 209 43.1
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 5.9e-39 165.2 204 43.1
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.0e-38 164.5 204 44.1
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 5.0e-38 162.2 195 41.5
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 3.3e-37 159.5 200 41.0
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 3.3e-37 159.5 203 41.4
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 7.2e-37 158.3 205 39.0
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.2e-36 157.5 201 43.8
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.1e-36 156.8 200 39.0
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 4.7e-36 155.6 216 41.2
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 1.8e-35 153.7 207 41.5
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 2.3e-35 153.3 211 39.8
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 2.3e-35 153.3 211 39.8
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 6.8e-35 151.8 203 38.4
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 6.8e-35 151.8 203 38.4
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 6.8e-35 151.8 216 43.5
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 1.5e-34 150.6 202 40.1
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 3.4e-34 149.4 203 37.4
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 3.4e-34 149.4 125 60.8
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 4.4e-34 149.1 203 37.4
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 4.4e-34 149.1 203 37.4
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 5.7e-34 148.7 213 42.3
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.3e-33 147.5 195 40.0
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 1.7e-33 147.1 202 41.6
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 2.9e-33 146.4 210 40.0
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 3.7e-33 146.0 199 40.2
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 3.7e-33 146.0 211 40.3
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 1.1e-32 144.4 211 38.9
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 5.4e-32 142.1 138 51.4
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 1.2e-31 141.0 202 39.1
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.2e-31 141.0 212 37.7
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 2.0e-31 140.2 203 38.9
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 3.5e-31 139.4 167 46.1
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 7.8e-31 138.3 193 38.3
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.7e-30 137.1 125 57.6
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 6.6e-30 135.2 184 40.2
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 1.5e-29 134.0 122 54.9
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 1.9e-29 133.7 187 35.8
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 5.6e-29 132.1 193 39.9
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 1.2e-28 131.0 214 33.6
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.1e-28 130.2 116 57.8
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 3.6e-28 129.4 203 39.4
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 4.7e-28 129.0 113 54.0
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 4.7e-28 129.0 188 37.2
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 8.0e-28 128.3 203 38.9
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 1.8e-27 127.1 201 38.8
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.3e-27 126.7 213 39.0
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 3.1e-27 126.3 208 35.1
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 5.8e-26 122.1 206 37.4
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 9.8e-26 121.3 210 32.4
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.3e-25 120.9 125 50.4
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.2e-25 120.2 213 39.0
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 6.4e-25 118.6 149 40.9
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 1.9e-24 117.1 203 37.9
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 1.9e-24 117.1 203 37.9
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 5.4e-24 115.5 188 36.7
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 7.0e-24 115.2 133 43.6
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-23 114.4 187 39.0
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 1.2e-23 114.4 156 38.5
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 6.0e-23 112.1 190 34.7
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 3.0e-22 109.8 136 46.3
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 3.9e-22 109.4 192 33.9
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-21 107.8 147 42.9
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 5.6e-21 105.5 202 35.6
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 1.2e-20 104.4 103 61.2
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 4.7e-20 102.4 160 37.5
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 6.2e-20 102.1 127 43.3
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 8.1e-20 101.7 166 33.7
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 1.4e-19 100.9 153 34.6
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 4.0e-19 99.4 92 47.8
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 4.0e-19 99.4 123 40.7
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 4.0e-19 99.4 53 90.6
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 9.8e-18 94.7 94 48.9
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 2.7e-15 86.7 78 53.8
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.3e-14 84.3 201 29.9
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 4.7e-12 75.9 89 47.2
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 4.0e-11 72.8 67 59.7
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 5.2e-11 72.4 91 40.7
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 5.2e-11 72.4 91 40.7
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 7.6e-10 68.6 65 49.2
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 2.2e-09 67.0 96 37.5
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 3.2e-08 63.2 78 37.2
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.2e-08 63.2 66 43.9
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.6e-07 60.8 187 29.4
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 5.1e-06 55.8 51 64.7


User provided reference genes

Program Settings