Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 1.2e-191 672.9 332 100.0
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 3.5e-61 239.6 118 99.2
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.5e-59 234.2 142 81.0
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 2.5e-59 233.4 124 90.3
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 1.2e-58 231.1 118 93.2
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 2.1e-58 230.3 117 95.7
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 2.8e-58 229.9 117 94.9
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 2.8e-58 229.9 142 80.3
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 3.6e-58 229.6 120 89.2
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 6.1e-58 228.8 117 94.9
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 6.1e-58 228.8 118 93.2
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 6.1e-58 228.8 118 92.4
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 8.0e-58 228.4 118 93.2
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 8.0e-58 228.4 123 88.6
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 8.0e-58 228.4 123 88.6
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 8.0e-58 228.4 120 90.8
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 8.0e-58 228.4 117 94.0
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 1.4e-57 227.6 119 90.8
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 1.8e-57 227.3 117 92.3
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 1.8e-57 227.3 117 92.3
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 2.3e-57 226.9 117 91.5
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 2.3e-57 226.9 117 92.3
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 2.3e-57 226.9 122 88.5
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 2.3e-57 226.9 118 91.5
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 2.3e-57 226.9 122 88.5
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 2.3e-57 226.9 117 92.3
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 2.3e-57 226.9 116 93.1
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 3.0e-57 226.5 117 91.5
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 4.0e-57 226.1 118 89.8
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 4.0e-57 226.1 117 92.3
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 4.0e-57 226.1 121 89.3
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 4.0e-57 226.1 122 87.7
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 4.0e-57 226.1 117 91.5
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 5.2e-57 225.7 117 91.5
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 5.2e-57 225.7 118 90.7
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 5.2e-57 225.7 117 94.0
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 6.8e-57 225.3 117 90.6
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 6.8e-57 225.3 117 90.6
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 6.8e-57 225.3 122 86.9
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 6.8e-57 225.3 117 92.3
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 8.9e-57 224.9 121 88.4
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 8.9e-57 224.9 117 91.5
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 8.9e-57 224.9 118 91.5
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 8.9e-57 224.9 122 87.7
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 1.2e-56 224.6 117 90.6
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 1.2e-56 224.6 119 89.9
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 1.2e-56 224.6 117 90.6
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 1.2e-56 224.6 117 92.3
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 1.2e-56 224.6 122 86.9
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 1.2e-56 224.6 117 91.5
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 1.2e-56 224.6 118 89.8
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.2e-56 224.6 117 90.6
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 1.5e-56 224.2 171 67.3
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 1.5e-56 224.2 171 67.3
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 1.5e-56 224.2 117 90.6
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 1.5e-56 224.2 118 89.8
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 1.5e-56 224.2 117 91.5
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 2.0e-56 223.8 118 90.7
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 2.0e-56 223.8 118 89.8
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 2.0e-56 223.8 118 89.8
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 2.0e-56 223.8 118 89.8
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 2.0e-56 223.8 118 89.8
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 2.0e-56 223.8 117 88.9
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 2.0e-56 223.8 117 91.5
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 2.0e-56 223.8 117 91.5
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 2.6e-56 223.4 117 90.6
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 2.6e-56 223.4 117 90.6
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 2.6e-56 223.4 117 90.6
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.6e-56 223.4 117 90.6
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.6e-56 223.4 117 90.6
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 2.6e-56 223.4 117 89.7
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 2.6e-56 223.4 117 89.7
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 2.6e-56 223.4 117 91.5
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 3.4e-56 223.0 117 89.7
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 3.4e-56 223.0 117 90.6
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 4.4e-56 222.6 118 89.0
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 4.4e-56 222.6 118 89.0
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 4.4e-56 222.6 118 89.8
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 4.4e-56 222.6 117 89.7
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 4.4e-56 222.6 116 90.5
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 4.4e-56 222.6 121 89.3
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 5.8e-56 222.2 118 89.0
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 5.8e-56 222.2 118 89.0
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 5.8e-56 222.2 118 89.0
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 5.8e-56 222.2 118 89.0
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 5.8e-56 222.2 118 89.0
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 5.8e-56 222.2 118 89.0
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 5.8e-56 222.2 117 90.6
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 7.5e-56 221.9 117 90.6
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 7.5e-56 221.9 117 90.6
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 7.5e-56 221.9 118 91.5
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 7.5e-56 221.9 118 91.5
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 7.5e-56 221.9 117 89.7
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 7.5e-56 221.9 117 90.6
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 7.5e-56 221.9 117 88.9
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 9.8e-56 221.5 122 85.2
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 1.3e-55 221.1 118 89.0
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.3e-55 221.1 117 89.7
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.3e-55 221.1 117 90.6
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 1.7e-55 220.7 118 88.1
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 1.7e-55 220.7 118 88.1
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 2.2e-55 220.3 117 88.0
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 2.2e-55 220.3 117 89.7
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 3.7e-55 219.5 117 88.0
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 3.7e-55 219.5 121 88.4
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 3.7e-55 219.5 122 86.9
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 4.9e-55 219.2 118 88.1
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 4.9e-55 219.2 118 88.1
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 4.9e-55 219.2 118 88.1
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 4.9e-55 219.2 117 88.9
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 6.4e-55 218.8 117 88.9
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 8.3e-55 218.4 121 86.0
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 1.4e-54 217.6 116 88.8
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 1.4e-54 217.6 117 87.2
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 4.1e-54 216.1 117 87.2
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 9.2e-54 214.9 118 88.1
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 9.2e-54 214.9 117 86.3
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.2e-53 214.5 118 88.1
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.0e-53 213.8 118 87.3
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 1.3e-52 211.1 138 78.3
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 2.3e-52 210.3 117 86.3
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 3.0e-52 209.9 117 84.6
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 1.9e-51 207.2 116 84.5
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 4.7e-50 202.6 117 82.9
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 4.7e-50 202.6 122 79.5
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.1e-49 201.4 127 75.6
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.1e-49 201.4 127 75.6
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 8.9e-49 198.4 117 82.1
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 2.0e-48 197.2 117 81.2
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 3.4e-48 196.4 122 80.3
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 9.8e-48 194.9 117 76.9
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 9.8e-48 194.9 117 81.2
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 1.9e-46 190.7 132 73.5
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 7.3e-43 178.7 92 88.0
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 1.6e-42 177.6 114 71.1
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 6.2e-42 175.6 116 65.5
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 4.0e-41 172.9 87 92.0
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 4.4e-40 169.5 117 73.5
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 2.1e-37 160.6 80 96.2
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 6.6e-36 155.6 170 52.4
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 9.5e-35 151.8 77 90.9
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 1.2e-34 151.4 77 90.9
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 1.6e-34 151.0 82 85.4
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 4.7e-34 149.4 80 87.5
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 8.1e-34 148.7 142 59.9
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 2.4e-33 147.1 118 57.6
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 1.3e-28 131.3 84 75.0
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 2.8e-26 123.6 122 49.2
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.1e-25 121.7 74 78.4
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 2.0e-24 117.5 82 72.0
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 5.8e-24 115.9 80 75.0
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 8.1e-18 95.5 51 86.3
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.9e-14 84.3 45 86.7
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 3.2e-14 83.6 45 84.4
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 5.4e-14 82.8 45 84.4
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 9.3e-14 82.0 46 84.8
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 2.1e-13 80.9 45 82.2
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.5e-13 80.1 45 82.2
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 3.5e-13 80.1 40 95.0
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.8e-12 77.8 45 80.0
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 1.5e-11 74.7 42 85.7
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 9.6e-11 72.0 45 77.8
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 2.8e-10 70.5 37 89.2
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.2e-08 65.1 37 83.8
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 3.4e-08 63.5 37 81.1
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.9e-07 60.5 37 78.4
CAN.G2003.1 Capsicum annuum HOM05D006126 ORTHO05D007792 1.4e-06 58.2 72 44.4
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.4e-06 58.2 31 83.9
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.4e-06 58.2 31 83.9
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.4e-06 58.2 31 83.9
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.4e-06 58.2 31 83.9
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.4e-06 58.2 31 83.9
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 5.5e-06 56.2 31 80.6
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 5.5e-06 56.2 31 80.6
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 7.1e-06 55.8 29 89.7
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 9.3e-06 55.5 34 79.4


User provided reference genes

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