Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 1.1e-71 273.1 127 100.0
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 9.6e-44 180.3 88 94.3
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 1.6e-43 179.5 88 94.3
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.1e-43 179.1 88 93.2
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.1e-43 179.1 88 93.2
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 2.1e-43 179.1 88 93.2
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 2.1e-43 179.1 88 93.2
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.6e-43 178.3 88 93.2
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.6e-43 178.3 88 93.2
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 3.6e-43 178.3 88 93.2
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 6.2e-43 177.6 88 92.0
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 6.2e-43 177.6 88 92.0
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 6.2e-43 177.6 88 92.0
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 6.2e-43 177.6 88 92.0
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 8.1e-43 177.2 88 92.0
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 1.1e-42 176.8 88 90.9
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.1e-42 176.8 88 92.0
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 1.4e-42 176.4 88 90.9
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 1.8e-42 176.0 88 90.9
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 1.8e-42 176.0 88 90.9
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 1.8e-42 176.0 88 90.9
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 2.4e-42 175.6 88 90.9
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 2.4e-42 175.6 88 92.0
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 3.1e-42 175.3 88 90.9
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 4.0e-42 174.9 88 90.9
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 4.0e-42 174.9 88 90.9
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 4.0e-42 174.9 88 89.8
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 4.0e-42 174.9 88 90.9
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 4.0e-42 174.9 88 89.8
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 4.0e-42 174.9 88 89.8
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 4.0e-42 174.9 88 90.9
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 4.0e-42 174.9 88 90.9
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 5.3e-42 174.5 88 90.9
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 5.3e-42 174.5 88 90.9
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 5.3e-42 174.5 88 89.8
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 5.3e-42 174.5 88 90.9
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 6.9e-42 174.1 88 89.8
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 9.0e-42 173.7 88 89.8
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 9.0e-42 173.7 88 89.8
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.2e-41 173.3 88 90.9
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 1.5e-41 172.9 88 89.8
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 2.0e-41 172.6 89 91.0
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 2.0e-41 172.6 88 89.8
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 2.0e-41 172.6 88 88.6
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 2.6e-41 172.2 88 89.8
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 4.5e-41 171.4 82 95.1
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 4.5e-41 171.4 82 95.1
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 4.5e-41 171.4 84 94.0
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 4.5e-41 171.4 88 89.8
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 5.8e-41 171.0 86 90.7
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 5.8e-41 171.0 88 88.6
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 5.8e-41 171.0 88 88.6
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 5.8e-41 171.0 88 87.5
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 7.6e-41 170.6 86 89.5
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 7.6e-41 170.6 85 91.8
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 9.9e-41 170.2 88 89.8
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 9.9e-41 170.2 86 90.7
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 1.3e-40 169.9 86 88.4
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 1.3e-40 169.9 87 89.7
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 1.3e-40 169.9 88 88.6
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 2.2e-40 169.1 88 87.5
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 2.2e-40 169.1 86 89.5
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 2.2e-40 169.1 88 88.6
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 2.2e-40 169.1 82 95.1
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 2.2e-40 169.1 84 91.7
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 2.9e-40 168.7 88 87.5
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 2.9e-40 168.7 87 88.5
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 3.8e-40 168.3 81 93.8
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 3.8e-40 168.3 81 93.8
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 3.8e-40 168.3 81 93.8
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 3.8e-40 168.3 81 93.8
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 3.8e-40 168.3 81 93.8
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 4.9e-40 167.9 86 87.2
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 4.9e-40 167.9 89 88.8
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 4.9e-40 167.9 88 87.5
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 4.9e-40 167.9 88 87.5
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 4.9e-40 167.9 85 89.4
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 6.4e-40 167.5 86 88.4
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 6.4e-40 167.5 88 85.2
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 6.4e-40 167.5 90 86.7
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 6.4e-40 167.5 88 86.4
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 8.4e-40 167.2 81 93.8
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 8.4e-40 167.2 85 89.4
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 8.4e-40 167.2 82 92.7
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 8.4e-40 167.2 88 89.8
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 8.4e-40 167.2 89 88.8
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 8.4e-40 167.2 88 89.8
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 1.4e-39 166.4 81 93.8
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 1.4e-39 166.4 80 93.8
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 1.9e-39 166.0 85 89.4
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 1.9e-39 166.0 82 92.7
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 1.9e-39 166.0 82 93.9
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 2.4e-39 165.6 90 85.6
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 2.4e-39 165.6 90 85.6
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 2.4e-39 165.6 90 87.8
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 3.2e-39 165.2 85 88.2
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 4.2e-39 164.9 85 89.4
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 4.2e-39 164.9 85 87.1
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 4.2e-39 164.9 81 92.6
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 5.4e-39 164.5 86 89.5
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 5.4e-39 164.5 85 87.1
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 5.4e-39 164.5 88 88.6
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 5.4e-39 164.5 88 86.4
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 9.3e-39 163.7 82 90.2
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 9.3e-39 163.7 80 93.8
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 1.6e-38 162.9 88 84.1
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 2.1e-38 162.5 82 92.7
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.7e-38 162.2 79 92.4
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 3.5e-38 161.8 97 80.4
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 3.5e-38 161.8 82 90.2
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 3.5e-38 161.8 87 87.4
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 3.5e-38 161.8 81 90.1
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 4.6e-38 161.4 82 90.2
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 4.6e-38 161.4 86 86.0
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 6.0e-38 161.0 82 86.6
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 7.9e-38 160.6 86 88.4
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 7.9e-38 160.6 88 83.0
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 7.9e-38 160.6 85 87.1
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 1.3e-37 159.8 84 84.5
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 1.3e-37 159.8 88 83.0
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 2.3e-37 159.1 83 85.5
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 2.3e-37 159.1 83 85.5
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 2.3e-37 159.1 88 84.1
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 2.3e-37 159.1 82 89.0
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 3.9e-37 158.3 99 77.8
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 3.9e-37 158.3 81 88.9
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 5.1e-37 157.9 77 90.9
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 8.7e-37 157.1 75 93.3
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 8.7e-37 157.1 88 79.5
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.9e-36 156.0 83 84.3
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 3.3e-36 155.2 76 89.5
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 3.3e-36 155.2 83 85.5
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 3.3e-36 155.2 78 88.5
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 7.4e-36 154.1 76 90.8
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 2.1e-35 152.5 83 88.0
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 3.7e-35 151.8 75 90.7
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 6.2e-35 151.0 85 80.0
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 1.1e-34 150.2 74 89.2
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 1.4e-34 149.8 80 82.5
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 3.1e-34 148.7 82 80.5
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 3.1e-34 148.7 81 82.7
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 3.1e-34 148.7 81 82.7
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 3.1e-34 148.7 77 88.3
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 5.3e-34 147.9 80 82.5
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 1.5e-33 146.4 74 86.5
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 1.5e-33 146.4 74 86.5
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 1.5e-33 146.4 74 86.5
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 1.5e-33 146.4 74 86.5
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 3.2e-31 138.7 81 74.1
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 7.1e-31 137.5 85 80.0
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 9.3e-31 137.1 70 84.3
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 5.1e-29 131.3 91 67.0
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 2.5e-28 129.0 70 85.7
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 3.3e-28 128.6 68 80.9
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 4.8e-27 124.8 69 75.4
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 8.2e-27 124.0 64 85.9
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 3.1e-26 122.1 60 91.7
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 3.8e-24 115.2 60 81.7
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 6.5e-24 114.4 63 79.4
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 3.3e-20 102.1 55 87.3
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 5.7e-20 101.3 77 59.7
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 9.7e-20 100.5 48 95.8
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 5.3e-18 94.7 66 68.2
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 1.7e-16 89.7 51 76.5
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 8.5e-16 87.4 44 88.6
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 2.1e-14 82.8 88 52.3
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.4e-13 80.1 38 89.5
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 3.9e-13 78.6 46 76.1
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.1e-12 77.0 67 61.2
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.5e-12 76.6 37 94.6
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 2.5e-12 75.9 47 78.7
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 3.3e-12 75.5 39 76.9
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 3.3e-12 75.5 39 76.9
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 5.7e-12 74.7 53 69.8
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 7.4e-12 74.3 39 84.6
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 3.7e-11 72.0 51 62.7
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 4.1e-10 68.6 38 86.8
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 6.9e-10 67.8 38 84.2
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.7e-08 63.2 29 86.2
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 4.2e-07 58.5 38 78.9
MBI10_g35299_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.7e-06 55.8 29 82.8


User provided reference genes

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