Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G233.3 Capsicum annuum HOM05D000188 ORTHO05D007437 2.8e-191 671.8 339 100.0
PGSC0003DMG400019791 Solanum tuberosum HOM05D000188 ORTHO05D007437 3.8e-95 352.4 221 85.1
Solyc03g063760.4 Solanum lycopersicum HOM05D000188 ORTHO05D007437 1.3e-92 344.0 221 82.8
Nitab4.5_0005201g0050 Nicotiana tabacum HOM05D000188 ORTHO05D007437 1.5e-91 340.5 221 81.0
Sopen03g017090 Solanum pennellii HOM05D000188 ORTHO05D007437 4.3e-91 339.0 221 82.4
vmacro09090 Vaccinium macrocarpon HOM05D000188 ORTHO05D007437 3.7e-82 309.3 223 72.6
Hma1.2p1_0621F.1_g190750 Hydrangea macrophylla HOM05D000188 ORTHO05D007437 6.2e-82 308.5 211 75.4
Migut.J01781 Erythranthe guttata HOM05D000188 ORTHO05D007437 1.1e-81 307.8 221 72.9
SGA_v2.0_scaffold105G30444 Striga asiatica HOM05D004307 ORTHO05D005068 4.5e-80 302.4 204 75.0
DCAR_013585 Daucus carota HOM05D000188 ORTHO05D007437 7.6e-80 301.6 222 70.7
HanXRQChr17g0566391 Helianthus annuus HOM05D000188 ORTHO05D007437 9.9e-80 301.2 215 72.6
COL.COLO4_28666 Corchorus olitorius HOM05D000188 ORTHO05D007437 1.7e-79 300.4 203 74.9
Hund19166 Selenicereus undatus HOM05D000188 ORTHO05D007437 2.2e-79 300.1 210 73.3
CSS0023170 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D007437 2.9e-79 299.7 221 72.4
Gohir.A09G124000 Gossypium hirsutum HOM05D000188 ORTHO05D007437 3.8e-79 299.3 204 75.5
Gorai.006G138300 Gossypium raimondii HOM05D000188 ORTHO05D007437 3.8e-79 299.3 204 75.5
CSS0039490 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D007437 6.4e-79 298.5 221 71.9
MSTRG.19880 Avicennia marina HOM05D000188 ORTHO05D007437 1.4e-78 297.4 221 71.0
CSS0019762 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D007437 1.9e-78 297.0 220 71.4
PGR004G2356 Punica granatum HOM05D000188 ORTHO05D007437 2.5e-78 296.6 214 71.5
Potri.006G054600 Populus trichocarpa HOM05D000188 ORTHO05D007437 3.2e-78 296.2 215 70.7
Rhsim04G0100100 Rhododendron simsii HOM05D000188 ORTHO05D007437 3.2e-78 296.2 240 67.9
MD12G1067500 Malus domestica HOM05D000188 ORTHO05D007437 4.2e-78 295.8 203 73.4
Prupe.7G066800 Prunus persica HOM05D000188 ORTHO05D007437 5.5e-78 295.4 201 74.1
Cpa.g.sc92.15 Carica papaya HOM05D000188 ORTHO05D007437 9.3e-78 294.7 203 74.4
Gohir.D09G120800 Gossypium hirsutum HOM05D000188 ORTHO05D007437 9.3e-78 294.7 204 74.5
Lsat_1_v5_gn_4_24661 Lactuca sativa HOM05D000188 ORTHO05D007437 9.3e-78 294.7 213 70.9
Peaxi162Scf00650g00224 Petunia axillaris HOM05D000188 ORTHO05D007437 1.2e-77 294.3 175 85.7
TWI74G0248 Tripterygium wilfordii HOM05D000188 ORTHO05D007437 1.2e-77 294.3 221 69.2
Sabra06G0038600 Salix brachista HOM05D000188 ORTHO05D007437 2.1e-77 293.5 213 70.0
TAR369G1129 Trochodendron aralioides HOM05D000188 ORTHO05D007437 3.5e-77 292.7 221 70.6
ClCG10G017160 Citrullus lanatus HOM05D000188 ORTHO05D007437 4.6e-77 292.4 220 70.0
MD14G1067600 Malus domestica HOM05D000188 ORTHO05D007437 4.6e-77 292.4 221 69.7
EL10Ac3g07022 Beta vulgaris HOM05D000188 ORTHO05D007437 1.0e-76 291.2 208 71.6
CSS0006699 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D007437 1.0e-76 291.2 197 75.6
Ciclev10004523m.g Citrus clementina HOM05D000188 ORTHO05D007437 1.0e-76 291.2 202 72.8
Thecc.05G161500 Theobroma cacao HOM05D000188 ORTHO05D007437 1.3e-76 290.8 203 72.9
CSS0026832 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D007437 3.0e-76 289.7 197 75.1
GSVIVG01033323001 Vitis vinifera HOM05D000188 ORTHO05D007437 3.0e-76 289.7 221 69.2
Cc06_g16650 Coffea canephora HOM05D000188 ORTHO05D007437 3.9e-76 289.3 218 69.7
CsaV3_3G039240 Cucumis sativus L. HOM05D000188 ORTHO05D007437 5.1e-76 288.9 214 69.2
Sed0022594 Sechium edule HOM05D000188 ORTHO05D007437 5.1e-76 288.9 214 69.6
PSO339G4937 Papaver somniferum HOM05D000188 ORTHO05D007437 1.9e-75 287.0 205 69.3
Ca_08479_v3 Cicer arietinum L. HOM05D000188 ORTHO05D007437 2.5e-75 286.6 221 68.8
Glyma.19G142100 Glycine max HOM05D000188 ORTHO05D007437 3.3e-75 286.2 212 69.3
Eucgr.A02391 Eucalyptus grandis HOM05D000188 ORTHO05D007437 4.3e-75 285.8 213 70.0
Glyma.03G139000 Glycine max HOM05D000188 ORTHO05D007437 4.3e-75 285.8 203 70.4
QL07p021464 Quercus lobata HOM05D000188 ORTHO05D007437 4.3e-75 285.8 208 70.2
Aqoxy1G00273 Aquilegia oxysepala HOM05D000188 ORTHO05D007437 5.6e-75 285.4 212 68.4
TPR.G3833 Trifolium pratense HOM05D000188 ORTHO05D007437 5.6e-75 285.4 221 68.3
CANSAT80G2344 Cannabis sativa HOM05D000188 ORTHO05D007437 7.4e-75 285.0 221 66.5
PSO384G0288 Papaver somniferum HOM05D000188 ORTHO05D007437 7.4e-75 285.0 218 67.0
Lj1g0015472 Lotus japonicus HOM05D000188 ORTHO05D007437 9.6e-75 284.6 221 67.4
THA.LOC104827302 Tarenaya hassleriana HOM05D000188 ORTHO05D007437 9.6e-75 284.6 210 70.0
CSS0041633 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D007437 1.3e-74 284.3 197 74.6
arahy.Tifrunner.gnm1.ann1.1M4GHK Arachis hypogaea HOM05D000188 ORTHO05D007437 1.6e-74 283.9 221 67.4
VMungo1383G2187 Vigna mungo HOM05D000188 ORTHO05D007437 1.6e-74 283.9 204 69.1
Lalb_Chr20g0110861 Lupinus albus HOM05D000188 ORTHO05D007437 2.1e-74 283.5 221 67.9
Phvul.001G136200 Phaseolus vulgaris HOM05D000188 ORTHO05D007437 2.8e-74 283.1 200 70.0
arahy.Tifrunner.gnm1.ann1.51X55V Arachis hypogaea HOM05D000188 ORTHO05D007437 3.7e-74 282.7 221 67.0
FAN14G5355 Fragaria x ananassa HOM05D000188 ORTHO05D007437 4.8e-74 282.3 216 68.5
Actinidia38564 Actinidia chinensis HOM05D000188 ORTHO05D007437 6.2e-74 282.0 224 67.4
Nitab4.5_0002220g0040 Nicotiana tabacum HOM05D000188 ORTHO05D007437 8.2e-74 281.6 221 70.6
Medtr7g092200 Medicago truncatula HOM05D000188 ORTHO05D007437 1.1e-73 281.2 209 67.9
AUR62024402 Chenopodium quinoa HOM05D000188 ORTHO05D007437 1.4e-73 280.8 203 69.0
Thhalv10003809m.g Eutrema salsugineum HOM05D000188 ORTHO05D007437 1.4e-73 280.8 209 69.4
CiPaw.09G035200 Carya illinoinensis HOM05D000188 ORTHO05D007437 1.8e-73 280.4 203 68.0
FvH4_6g23281 Fragaria vesca HOM05D000188 ORTHO05D007437 1.8e-73 280.4 216 68.5
FAN02G0408 Fragaria x ananassa HOM05D000188 ORTHO05D007437 1.8e-73 280.4 216 68.5
RcHm_v2.0_Chr3g0481241 Rosa chinensis HOM05D000188 ORTHO05D007437 1.8e-73 280.4 214 69.6
Sp2g14200 Schrenkiella parvula HOM05D000188 ORTHO05D007437 4.0e-73 279.3 209 69.4
CSS0019674 Camellia sinensis var. sinensis HOM05D004307 ORTHO05D005068 6.9e-73 278.5 197 74.6
ECA234G1888 Erigeron canadensis HOM05D000188 ORTHO05D007437 6.9e-73 278.5 191 72.3
FAN09G1107 Fragaria x ananassa HOM05D000188 ORTHO05D007437 9.0e-73 278.1 216 67.6
Psat3g071640 Pisum sativum HOM05D000188 ORTHO05D007437 1.5e-72 277.3 221 65.6
Aa31sc40G10 Aethionema arabicum HOM05D000188 ORTHO05D007437 2.0e-72 276.9 206 69.4
Carub.0005s0219 Capsella rubella HOM05D000188 ORTHO05D007437 2.0e-72 276.9 203 70.4
C09p31150 Brassica napus HOM05D000188 ORTHO05D007437 2.6e-72 276.6 223 65.5
BolC9t55972H Brassica oleracea HOM05D000188 ORTHO05D007437 2.6e-72 276.6 223 65.5
A09p24290 Brassica napus HOM05D000188 ORTHO05D007437 3.4e-72 276.2 209 68.4
CARHR145610 Cardamine hirsuta HOM05D000188 ORTHO05D007437 3.4e-72 276.2 204 70.1
AT2G03270 Arabidopsis thaliana HOM05D000188 ORTHO05D007437 4.5e-72 275.8 198 71.7
BraA09t38025Z Brassica rapa HOM05D000188 ORTHO05D007437 5.8e-72 275.4 209 67.9
MELO3C009668.2 Cucumis melo HOM05D000188 ORTHO05D007437 1.3e-71 274.2 190 71.1
AL5G12910 Arabidopsis lyrata HOM05D000188 ORTHO05D007437 8.4e-71 271.6 203 69.0
CDE05G3373 Ceratophyllum demersum HOM05D000188 ORTHO05D007437 1.9e-70 270.4 202 69.8
Oeu033783.1 Olea europaea HOM05D000188 ORTHO05D007437 1.0e-68 264.6 169 78.1
ATR0605G200 Amborella trichopoda HOM05D000188 ORTHO05D007437 7.4e-67 258.5 203 65.5
RcHm_v2.0_Chr3g0481211 Rosa chinensis HOM05D000188 ORTHO05D007437 3.1e-65 253.1 220 63.6
Lj2C379G3 Lonicera japonica HOM05D004307 ORTHO05D005068 1.2e-64 251.1 165 77.0
unitig_46.g18445 Utricularia gibba HOM05D000188 ORTHO05D007437 3.4e-64 249.6 227 55.9
Os03g0586900 Oryza sativa ssp. japonica HOM05D000188 ORTHO05D007437 1.3e-63 247.7 200 62.0
MBI01_g18887_MAGBIO Magnolia biondii HOM05D000188 ORTHO05D007437 8.5e-63 245.0 181 69.1
Pp3c5_2640 Physcomitrium patens HOM05D000188 ORTHO05D007437 3.0e-60 236.5 219 58.4
SHI21399 Sapria himalayana HOM05D000188 ORTHO05D007437 8.2e-58 228.4 220 56.8
AUR62025996 Chenopodium quinoa HOM05D000188 ORTHO05D007437 2.4e-57 226.9 203 59.6
Nn7g36129 Nelumbo nucifera HOM05D000188 ORTHO05D007437 1.5e-56 224.2 136 79.4
Manes.09G028600 Manihot esculenta HOM05D000188 ORTHO05D007437 3.4e-56 223.0 216 56.9
Sc13g0001930 Simmondsia chinensis HOM05D000188 ORTHO05D007437 4.5e-56 222.6 136 76.5
HPP92_024088 Vanilla planifolia HOM05D000188 ORTHO05D007437 8.5e-55 218.4 201 57.2
AagrBONN_evm.TU.Sc2ySwM_344.4524 Anthoceros agrestis HOM05D000188 ORTHO05D007437 6.7e-52 208.8 197 53.3
CBR_g55000 Chara braunii HOM05D000188 ORTHO05D007437 8.8e-52 208.4 183 56.3
SMO239G0154 Selaginella moellendorffii HOM05D000188 ORTHO05D007437 4.8e-50 202.6 211 50.7
Dinv24129 Davidia involucrata HOM05D000188 ORTHO05D007437 1.4e-46 191.0 116 79.3
Mapoly0036s0146 Marchantia polymorpha HOM05D000188 ORTHO05D007437 2.3e-44 183.7 135 63.7
Duzib128G1302 Durio zibethinus HOM05D000188 ORTHO05D007437 1.1e-41 174.9 203 50.7
Cre10.g442650 Chlamydomonas reinhardtii HOM05D000188 ORTHO05D007437 2.0e-35 154.1 218 42.2
Psat0s4353g0080 Pisum sativum HOM05D025452 ORTHO05D018004 5.7e-35 152.5 94 76.6
Actinidia17248 Actinidia chinensis HOM05D000188 ORTHO05D007437 1.1e-30 138.3 102 69.6
arahy.Tifrunner.gnm1.ann1.PQ7GEF Arachis hypogaea HOM05D000188 ORTHO05D031558 8.0e-29 132.1 119 59.7
MCO07G157 Micromonas commoda HOM05D000188 ORTHO05D007437 1.9e-22 110.9 232 33.6
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 3.2e-17 93.6 56 75.0
A03p48900 Brassica napus HOM05D000188 ORTHO05D007437 1.6e-16 91.3 92 54.3
PRCOL_00001645 Prasinoderma coloniale HOM05D000188 ORTHO05D007437 4.3e-14 83.2 207 31.9
arahy.Tifrunner.gnm1.ann1.L1D11P Arachis hypogaea HOM05D000188 ORTHO05D007437 7.3e-14 82.4 67 61.2
Atru.chr1.1041 Acer truncatum HOM05D000188 ORTHO05D007437 6.1e-13 79.3 50 70.0
Dinv18079 Davidia involucrata HOM05D000188 ORTHO05D031558 2.3e-12 77.4 50 74.0
BcaC01g04753 Brassica carinata HOM05D002257 ORTHO05D002417 2.9e-10 70.5 50 66.0
Zm00001eb049300 Zea mays HOM05D000188 ORTHO05D007437 1.9e-09 67.8 51 62.7
C03p34160 Brassica napus HOM05D000174 ORTHO05D001106 1.3e-07 61.6 44 63.6
BolC3t15726H Brassica oleracea HOM05D000174 ORTHO05D001106 1.3e-07 61.6 44 63.6
arahy.Tifrunner.gnm1.ann1.AYMC7Q Arachis hypogaea HOM05D000188 ORTHO05D031558 8.6e-07 58.9 36 75.0
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 1.1e-06 58.5 46 58.7


User provided reference genes

Program Settings