Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 1.5e-95 352.8 171 100.0
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 5.3e-21 105.1 114 52.6
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 5.3e-21 105.1 114 53.5
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.5e-20 103.6 114 52.6
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 3.4e-20 102.4 119 50.4
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 5.8e-20 101.7 114 50.9
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 7.6e-20 101.3 114 50.0
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 7.6e-20 101.3 114 50.0
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 1.3e-19 100.5 114 50.9
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 1.7e-19 100.1 114 50.9
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 1.7e-19 100.1 114 50.0
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 2.2e-19 99.8 114 50.9
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 2.2e-19 99.8 114 50.0
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 2.9e-19 99.4 115 48.7
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 3.8e-19 99.0 114 48.2
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 3.8e-19 99.0 114 50.0
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 1.4e-18 97.1 114 49.1
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 1.4e-18 97.1 114 49.1
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 1.9e-18 96.7 119 47.9
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 1.9e-18 96.7 114 47.4
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 2.5e-18 96.3 114 48.2
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 3.2e-18 95.9 114 48.2
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 3.2e-18 95.9 114 49.1
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 5.5e-18 95.1 114 47.4
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 5.5e-18 95.1 114 48.2
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 5.5e-18 95.1 114 47.4
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 7.1e-18 94.7 114 48.2
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 9.3e-18 94.4 119 45.4
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 9.3e-18 94.4 115 47.0
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 9.3e-18 94.4 114 47.4
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 1.2e-17 94.0 140 42.9
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 1.2e-17 94.0 114 47.4
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 1.6e-17 93.6 114 46.5
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 1.6e-17 93.6 114 46.5
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 2.1e-17 93.2 114 46.5
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 2.1e-17 93.2 125 42.4
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 2.7e-17 92.8 114 46.5
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 2.7e-17 92.8 114 46.5
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 3.5e-17 92.4 114 44.7
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 4.6e-17 92.0 114 45.6
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 4.6e-17 92.0 114 46.5
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 6.0e-17 91.7 114 45.6
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 6.0e-17 91.7 114 46.5
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 6.0e-17 91.7 114 46.5
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 6.0e-17 91.7 114 45.6
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 7.9e-17 91.3 114 46.5
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 7.9e-17 91.3 114 47.4
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 1.0e-16 90.9 114 46.5
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 1.0e-16 90.9 114 43.9
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 1.0e-16 90.9 114 46.5
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 1.0e-16 90.9 114 46.5
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 1.3e-16 90.5 114 45.6
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 1.3e-16 90.5 114 45.6
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 1.3e-16 90.5 114 45.6
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 1.3e-16 90.5 114 46.5
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 1.3e-16 90.5 115 46.1
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 1.3e-16 90.5 114 45.6
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 1.3e-16 90.5 114 46.5
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 1.3e-16 90.5 114 46.5
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 1.8e-16 90.1 114 45.6
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 1.8e-16 90.1 114 43.9
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 2.3e-16 89.7 118 44.1
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 2.3e-16 89.7 114 44.7
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 2.3e-16 89.7 114 44.7
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 2.3e-16 89.7 114 44.7
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 3.0e-16 89.4 113 46.0
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 3.0e-16 89.4 125 41.6
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 3.0e-16 89.4 114 44.7
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 3.0e-16 89.4 114 45.6
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 3.0e-16 89.4 114 45.6
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 3.0e-16 89.4 114 45.6
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 3.0e-16 89.4 114 44.7
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 3.0e-16 89.4 114 45.6
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 3.9e-16 89.0 117 44.4
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 3.9e-16 89.0 114 44.7
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 3.9e-16 89.0 113 45.1
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 3.9e-16 89.0 114 45.6
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 3.9e-16 89.0 114 45.6
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 3.9e-16 89.0 114 45.6
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 3.9e-16 89.0 114 43.9
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 5.1e-16 88.6 114 44.7
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 5.1e-16 88.6 113 46.9
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 6.7e-16 88.2 114 44.7
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 6.7e-16 88.2 114 44.7
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 6.7e-16 88.2 114 44.7
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 8.7e-16 87.8 113 46.9
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 8.7e-16 87.8 114 42.1
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 1.1e-15 87.4 111 45.9
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 1.1e-15 87.4 113 44.2
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.1e-15 87.4 114 44.7
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 1.1e-15 87.4 113 45.1
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.5e-15 87.0 158 36.7
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 1.5e-15 87.0 114 43.9
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 1.5e-15 87.0 120 45.0
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 1.9e-15 86.7 114 44.7
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 1.9e-15 86.7 114 44.7
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 1.9e-15 86.7 114 43.9
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 1.9e-15 86.7 114 43.9
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 2.5e-15 86.3 114 45.6
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 2.5e-15 86.3 114 44.7
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 2.5e-15 86.3 113 43.4
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 3.3e-15 85.9 115 44.3
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 3.3e-15 85.9 115 44.3
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 3.3e-15 85.9 115 44.3
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 3.3e-15 85.9 113 44.2
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 3.3e-15 85.9 113 46.0
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 3.3e-15 85.9 114 43.9
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 4.3e-15 85.5 114 43.9
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 4.3e-15 85.5 113 42.5
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 5.7e-15 85.1 114 43.9
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 5.7e-15 85.1 114 43.9
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 5.7e-15 85.1 114 43.9
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 5.7e-15 85.1 114 44.7
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 5.7e-15 85.1 114 43.9
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 7.4e-15 84.7 113 44.2
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 7.4e-15 84.7 114 43.9
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 9.6e-15 84.3 143 39.2
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 9.6e-15 84.3 113 44.2
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 9.6e-15 84.3 114 44.7
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 1.1e-13 80.9 114 41.2
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 1.1e-13 80.9 114 43.0
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 2.4e-13 79.7 114 43.0
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 2.4e-13 79.7 114 42.1
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 6.9e-13 78.2 114 42.1
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 1.5e-12 77.0 114 41.2
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 2.2e-11 73.2 115 38.3
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 1.1e-10 70.9 93 46.2
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 1.4e-10 70.5 67 55.2
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 4.2e-10 68.9 115 37.4
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 4.2e-10 68.9 94 43.6
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 1.2e-09 67.4 67 53.7
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 3.5e-09 65.9 115 36.5
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 1.0e-08 64.3 66 50.0
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 2.3e-08 63.2 114 35.1
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 6.7e-08 61.6 122 32.8


User provided reference genes

Program Settings