Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2091.1 Capsicum annuum HOM05D002496 ORTHO05D002787 0.0e+00 1077.4 581 100.0
CAN.G1783.6 Capsicum annuum HOM05D002496 ORTHO05D002787 7.9e-93 345.5 191 94.8
CAN.G5700.1 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-91 341.7 188 94.7
CAN.G1484.12 Capsicum annuum HOM05D002496 ORTHO05D002787 1.9e-83 314.3 204 84.8
CAN.G610.49 Capsicum annuum HOM05D008784 ORTHO05D000683 5.5e-78 296.2 446 50.4
PGSC0003DMG402030499 Solanum tuberosum HOM05D008784 ORTHO05D000683 1.8e-76 291.2 599 39.1
CAN.G309.94 Capsicum annuum HOM05D008784 ORTHO05D024788 2.3e-76 290.8 531 44.8
CAN.G1298.4 Capsicum annuum HOM05D008784 ORTHO05D000683 5.7e-75 286.2 627 41.1
Sopen05g003930 Solanum pennellii HOM05D008784 ORTHO05D000683 2.2e-74 284.3 603 38.6
Solyc05g008090.3 Solanum lycopersicum HOM05D008784 ORTHO05D000683 5.9e-72 276.2 605 38.2
CAN.G567.118 Capsicum annuum HOM05D002496 ORTHO05D002787 7.7e-72 275.8 327 55.0
CAN.G2376.2 Capsicum annuum HOM05D002496 ORTHO05D002787 9.1e-65 252.3 139 95.7
CAN.G575.1 Capsicum annuum HOM05D002496 ORTHO05D002787 5.9e-64 249.6 135 96.3
Nitab4.5_0000742g0120 Nicotiana tabacum HOM05D008784 ORTHO05D000683 1.4e-62 245.0 613 35.6
CAN.G1669.2 Capsicum annuum HOM05D008784 ORTHO05D002630 2.5e-62 244.2 424 43.6
CAN.G1563.3 Capsicum annuum HOM05D008784 ORTHO05D000683 3.2e-62 243.8 370 46.8
Solyc12g100360.1 Solanum lycopersicum HOM05D002496 ORTHO05D002787 4.2e-62 243.4 139 92.1
Sopen12g035030 Solanum pennellii HOM05D002496 ORTHO05D002787 4.2e-62 243.4 139 92.1
CAN.G2365.4 Capsicum annuum HOM05D008784 ORTHO05D000683 1.4e-60 238.4 373 44.8
Peaxi162Scf00738g00312 Petunia axillaris HOM05D002496 ORTHO05D002787 3.0e-60 237.3 139 87.1
Dinv13473 Davidia involucrata HOM05D002496 ORTHO05D002787 1.4e-52 211.8 135 79.3
Actinidia39346 Actinidia chinensis HOM05D002496 ORTHO05D002787 8.8e-52 209.1 140 76.4
Lj2A763G36 Lonicera japonica HOM05D002496 ORTHO05D002787 8.8e-52 209.1 140 72.9
Actinidia30436 Actinidia chinensis HOM05D002496 ORTHO05D002787 1.2e-51 208.8 140 75.0
CAN.G2091.2 Capsicum annuum HOM05D008784 ORTHO05D000683 1.5e-51 208.4 449 38.5
CiPaw.13G177100 Carya illinoinensis HOM05D002496 ORTHO05D002787 4.4e-51 206.8 139 75.5
Migut.D02566 Erythranthe guttata HOM05D002496 ORTHO05D002787 4.4e-51 206.8 147 70.1
Migut.D02589 Erythranthe guttata HOM05D002496 ORTHO05D002787 4.4e-51 206.8 147 70.1
Atru.chr3.2106 Acer truncatum HOM05D002496 ORTHO05D002787 5.7e-51 206.5 143 72.7
Ciclev10014012m.g Citrus clementina HOM05D002496 ORTHO05D002787 9.7e-51 205.7 143 72.0
TAR369G0007 Trochodendron aralioides HOM05D002496 ORTHO05D002787 1.3e-50 205.3 163 66.3
DCAR_029934 Daucus carota HOM05D002496 ORTHO05D002787 1.7e-50 204.9 140 72.1
Nitab4.5_0000827g0130 Nicotiana tabacum HOM05D002496 ORTHO05D002787 2.2e-50 204.5 139 79.9
PGR119G1355 Punica granatum HOM05D002496 ORTHO05D002787 2.8e-50 204.1 138 74.6
MSTRG.20937 Avicennia marina HOM05D002496 ORTHO05D002787 3.7e-50 203.8 143 69.2
TAR623G0218 Trochodendron aralioides HOM05D002496 ORTHO05D002787 4.8e-50 203.4 135 74.1
Rhsim01G0184300 Rhododendron simsii HOM05D002496 ORTHO05D002787 6.3e-50 203.0 140 73.6
SalBow2G0058 Salvia bowleyana HOM05D002496 ORTHO05D002787 6.3e-50 203.0 143 70.6
Aqoxy1G00475 Aquilegia oxysepala HOM05D002496 ORTHO05D002787 8.3e-50 202.6 142 71.8
Cpa.g.sc119.40 Carica papaya HOM05D002496 ORTHO05D002787 1.1e-49 202.2 134 75.4
MD03G1003600 Malus domestica HOM05D002496 ORTHO05D002787 1.1e-49 202.2 139 72.7
Cc01_g00070 Coffea canephora HOM05D002496 ORTHO05D002787 3.1e-49 200.7 140 72.9
Cfa009562 Carpinus fangiana HOM05D002496 ORTHO05D002787 4.1e-49 200.3 139 72.7
FAN25G0679 Fragaria x ananassa HOM05D002496 ORTHO05D002787 4.1e-49 200.3 141 71.6
Haze_22941 Corylus avellana HOM05D002496 ORTHO05D002787 5.3e-49 199.9 139 72.7
RcHm_v2.0_Chr5g0083811 Rosa chinensis HOM05D002496 ORTHO05D002787 5.3e-49 199.9 139 71.2
Lsat_1_v5_gn_6_53141 Lactuca sativa HOM05D002496 ORTHO05D002787 7.0e-49 199.5 145 67.6
vmacro12599 Vaccinium macrocarpon HOM05D002496 ORTHO05D002787 7.0e-49 199.5 140 72.9
MD11G1003500 Malus domestica HOM05D002496 ORTHO05D002787 9.1e-49 199.1 139 71.2
Nn7g35861 Nelumbo nucifera HOM05D002496 ORTHO05D002787 9.1e-49 199.1 164 64.0
Prupe.6G003300 Prunus persica HOM05D002496 ORTHO05D002787 1.2e-48 198.7 139 70.5
Manes.03G087600 Manihot esculenta HOM05D002496 ORTHO05D002787 2.0e-48 198.0 140 69.3
QL01p003675 Quercus lobata HOM05D002496 ORTHO05D002787 2.0e-48 198.0 135 74.8
PSO339G0705 Papaver somniferum HOM05D002496 ORTHO05D002787 2.7e-48 197.6 167 61.1
ECA233G0145 Erigeron canadensis HOM05D002496 ORTHO05D002787 3.5e-48 197.2 140 70.0
FvH4_3g45741 Fragaria vesca HOM05D002496 ORTHO05D002787 3.5e-48 197.2 139 71.2
Lj4g0028195 Lotus japonicus HOM05D002496 ORTHO05D002787 3.5e-48 197.2 138 72.5
MBI01_g25638_MAGBIO Magnolia biondii HOM05D002496 ORTHO05D002787 4.5e-48 196.8 163 64.4
HanXRQChr13g0405751 Helianthus annuus HOM05D002496 ORTHO05D002787 5.9e-48 196.4 140 69.3
Oeu023952.2 Olea europaea HOM05D002496 ORTHO05D002787 5.9e-48 196.4 143 67.1
FAN16G0954 Fragaria x ananassa HOM05D002496 ORTHO05D002787 7.7e-48 196.1 139 71.2
PSO384G1583 Papaver somniferum HOM05D002496 ORTHO05D002787 7.7e-48 196.1 167 61.1
CAN.G7166.1 Capsicum annuum HOM05D002496 ORTHO05D002787 1.0e-47 195.7 137 78.1
HanXRQChr02g0057261 Helianthus annuus HOM05D002496 ORTHO05D002787 1.0e-47 195.7 139 69.8
GSVIVG01025470001 Vitis vinifera HOM05D002496 ORTHO05D002787 1.0e-47 195.7 138 71.0
Ca_17842_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 2.2e-47 194.5 138 73.2
Glyma.05G167200 Glycine max HOM05D002496 ORTHO05D002787 2.2e-47 194.5 135 73.3
Glyma.08G125500 Glycine max HOM05D002496 ORTHO05D002787 2.2e-47 194.5 135 73.3
Thecc.09G199700 Theobroma cacao HOM05D002496 ORTHO05D002787 2.2e-47 194.5 139 69.8
Psat7g064160 Pisum sativum HOM05D002496 ORTHO05D002787 6.5e-47 193.0 138 72.5
SGA_v2.0_scaffold3G01729 Striga asiatica HOM05D002496 ORTHO05D002787 6.5e-47 193.0 143 65.7
TPR.G6803 Trifolium pratense HOM05D002496 ORTHO05D002787 1.1e-46 192.2 138 71.7
Duzib168G0200 Durio zibethinus HOM05D002496 ORTHO05D002787 1.9e-46 191.4 139 69.1
arahy.Tifrunner.gnm1.ann1.3G7H7K Arachis hypogaea HOM05D002496 ORTHO05D002787 3.2e-46 190.7 140 70.0
arahy.Tifrunner.gnm1.ann1.P751E4 Arachis hypogaea HOM05D002496 ORTHO05D002787 3.2e-46 190.7 140 70.0
ClCG03G014540 Citrullus lanatus HOM05D002496 ORTHO05D002787 3.2e-46 190.7 139 67.6
unitig_899.g15353 Utricularia gibba HOM05D002496 ORTHO05D002787 4.2e-46 190.3 139 66.9
Sed0022657 Sechium edule HOM05D002496 ORTHO05D002787 5.5e-46 189.9 139 67.6
Gohir.D03G146400 Gossypium hirsutum HOM05D002496 ORTHO05D002787 7.2e-46 189.5 139 69.1
Gorai.003G153800 Gossypium raimondii HOM05D002496 ORTHO05D002787 7.2e-46 189.5 139 69.1
Lalb_Chr13g0295581 Lupinus albus HOM05D002496 ORTHO05D002787 7.2e-46 189.5 143 67.8
Potri.001G003900 Populus trichocarpa HOM05D002496 ORTHO05D002787 1.6e-45 188.3 135 69.6
Gohir.A03G022300 Gossypium hirsutum HOM05D002496 ORTHO05D002787 2.7e-45 187.6 139 68.3
Sabra01G0002600 Salix brachista HOM05D002496 ORTHO05D002787 3.6e-45 187.2 135 69.6
CsaV3_1G041650 Cucumis sativus L. HOM05D002496 ORTHO05D002787 4.7e-45 186.8 139 66.2
Medtr8g088520 Medicago truncatula HOM05D002496 ORTHO05D002787 4.7e-45 186.8 138 70.3
Sed0000966 Sechium edule HOM05D002496 ORTHO05D002787 4.7e-45 186.8 135 68.1
MELO3C015577.2 Cucumis melo HOM05D002496 ORTHO05D002787 6.1e-45 186.4 139 65.5
Peaxi162Scf00159g00516 Petunia axillaris HOM05D000960 ORTHO05D000683 6.1e-45 186.4 615 30.9
ATR0827G153 Amborella trichopoda HOM05D002496 ORTHO05D002787 8.0e-45 186.0 166 59.0
CAN.G1669.14 Capsicum annuum HOM05D008784 ORTHO05D000683 1.4e-44 185.3 612 32.5
Eucgr.J01766 Eucalyptus grandis HOM05D002496 ORTHO05D002787 1.4e-44 185.3 142 66.9
CANSAT11G2110 Cannabis sativa HOM05D002496 ORTHO05D002787 1.8e-44 184.9 156 62.2
Phvul.002G247600 Phaseolus vulgaris HOM05D002496 ORTHO05D002787 1.8e-44 184.9 135 71.1
Potri.003G221100 Populus trichocarpa HOM05D002496 ORTHO05D002787 1.8e-44 184.9 135 67.4
CDE02G0627 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 3.0e-44 184.1 161 59.0
Sabra03G0164600 Salix brachista HOM05D002496 ORTHO05D002787 3.0e-44 184.1 135 67.4
HPP92_024699 Vanilla planifolia HOM05D002496 ORTHO05D002787 3.0e-44 184.1 146 63.7
THA.LOC104822681 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 4.0e-44 183.7 140 66.4
AL1G63400 Arabidopsis lyrata HOM05D002496 ORTHO05D002787 8.8e-44 182.6 138 65.9
THA.LOC104810325 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 8.8e-44 182.6 135 68.9
AUR62019163 Chenopodium quinoa HOM05D002496 ORTHO05D002787 1.5e-43 181.8 138 63.0
AT1G55350 Arabidopsis thaliana HOM05D002496 ORTHO05D002787 2.0e-43 181.4 138 65.2
Sp1g41030 Schrenkiella parvula HOM05D002496 ORTHO05D002787 2.0e-43 181.4 138 65.2
Carub.0001s4386 Capsella rubella HOM05D002496 ORTHO05D002787 3.4e-43 180.6 138 66.7
AUR62040902 Chenopodium quinoa HOM05D002496 ORTHO05D002787 3.4e-43 180.6 135 63.0
A06p00230 Brassica napus HOM05D002496 ORTHO05D002787 4.4e-43 180.3 138 63.8
Sc16g0012220 Simmondsia chinensis HOM05D002496 ORTHO05D002787 4.4e-43 180.3 138 63.8
SEGI_26512 Sequoiadendron giganteum HOM05D002496 ORTHO05D002787 7.5e-43 179.5 134 64.2
C06p10330 Brassica napus HOM05D002496 ORTHO05D002787 1.3e-42 178.7 138 63.8
BolC6t36109H Brassica oleracea HOM05D002496 ORTHO05D002787 1.3e-42 178.7 138 63.8
Thhalv10011175m.g Eutrema salsugineum HOM05D002496 ORTHO05D002787 2.2e-42 177.9 138 63.8
Aa31LG10G1150 Aethionema arabicum HOM05D002496 ORTHO05D002787 1.4e-41 175.3 138 63.0
VMungo0251G1507 Vigna mungo HOM05D002496 ORTHO05D002787 1.4e-41 175.3 128 70.3
BraA06t23239Z Brassica rapa HOM05D002496 ORTHO05D002787 1.8e-41 174.9 141 62.4
CARHR045010 Cardamine hirsuta HOM05D002496 ORTHO05D002787 2.4e-41 174.5 138 63.0
BcaC08g43619 Brassica carinata HOM05D002496 ORTHO05D002787 3.1e-41 174.1 134 63.4
EL10Ac4g10386 Beta vulgaris HOM05D002496 ORTHO05D002787 5.4e-41 173.3 138 60.1
Os02g0709400 Oryza sativa ssp. japonica HOM05D002496 ORTHO05D002787 5.4e-41 173.3 179 51.4
Dinv11477 Davidia involucrata HOM05D002496 ORTHO05D002787 1.2e-40 172.2 105 81.9
Zm00001eb014030 Zea mays HOM05D002496 ORTHO05D002787 3.5e-40 170.6 158 55.1
CAN.G2101.3 Capsicum annuum HOM05D008784 ORTHO05D000683 7.7e-40 169.5 270 48.5
BcaB04g16962 Brassica carinata HOM05D002496 ORTHO05D002787 2.3e-39 167.9 138 61.6
CAN.G743.1 Capsicum annuum HOM05D000960 ORTHO05D000683 7.2e-38 162.9 239 45.6
Hund21627 Selenicereus undatus HOM05D002496 ORTHO05D002787 7.2e-38 162.9 138 55.1
Mapoly0026s0090 Marchantia polymorpha HOM05D002496 ORTHO05D002787 1.4e-36 158.7 131 57.3
Mapoly0026s0110 Marchantia polymorpha HOM05D002496 ORTHO05D002787 1.4e-36 158.7 134 56.0
CSS0046180 Camellia sinensis var. sinensis HOM05D002496 ORTHO05D002787 5.2e-36 156.8 140 62.9
CAN.G202.1 Capsicum annuum HOM05D008784 ORTHO05D000683 8.9e-36 156.0 221 51.1
CAN.G610.15 Capsicum annuum HOM05D008784 ORTHO05D000683 4.9e-34 150.2 163 58.9
Pp3c17_17550 Physcomitrium patens HOM05D002496 ORTHO05D002787 8.3e-34 149.4 133 57.1
CAN.G5523.1 Capsicum annuum HOM05D008784 ORTHO05D000683 1.4e-33 148.7 207 53.1
SHI31315 Sapria himalayana HOM05D002496 ORTHO05D002787 2.4e-33 147.9 135 53.3
CAN.G2381.3 Capsicum annuum HOM05D008784 ORTHO05D000683 1.2e-32 145.6 184 48.9
CAN.G2289.2 Capsicum annuum HOM05D000960 ORTHO05D000683 2.0e-32 144.8 266 39.5
SMO332G0020 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 4.5e-32 143.7 135 51.9
CAN.G1703.1 Capsicum annuum HOM05D008784 ORTHO05D000683 1.3e-31 142.1 116 73.3
SMO334G0130 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 1.7e-31 141.7 135 51.1
AagrBONN_evm.TU.Sc2ySwM_344.939 Anthoceros agrestis HOM05D002496 ORTHO05D002787 2.3e-31 141.4 134 55.2
CAN.G2141.2 Capsicum annuum HOM05D008784 ORTHO05D000683 2.1e-29 134.8 102 78.4
CAN.G2365.2 Capsicum annuum HOM05D008784 ORTHO05D000683 3.6e-29 134.0 251 43.0
CAN.G2101.4 Capsicum annuum HOM05D008784 ORTHO05D000683 3.4e-27 127.5 215 47.0
COL.COLO4_05794 Corchorus olitorius HOM05D002496 ORTHO05D002787 5.0e-23 113.6 109 55.0
C03p92650 Brassica napus HOM05D002496 ORTHO05D002787 6.6e-23 113.2 104 58.7
CAN.G5672.1 Capsicum annuum HOM05D008784 ORTHO05D000683 2.1e-21 108.2 273 33.3
CAN.G2824.1 Capsicum annuum HOM05D008784 ORTHO05D000683 6.2e-21 106.7 208 38.9
CAN.G14962.1 Capsicum annuum HOM05D008784 ORTHO05D000683 6.8e-20 103.2 181 48.6
CAN.G2381.2 Capsicum annuum HOM05D008784 ORTHO05D000683 6.8e-20 103.2 90 63.3
CAN.G2314.1 Capsicum annuum HOM05D008784 ORTHO05D000683 2.0e-19 101.7 376 34.6
CAN.G610.11 Capsicum annuum HOM05D008784 ORTHO05D000683 3.4e-19 100.9 214 40.7
CAN.G1703.17 Capsicum annuum HOM05D002500 ORTHO05D002587 7.5e-19 99.8 71 73.2
CAN.G567.122 Capsicum annuum HOM05D008784 ORTHO05D000683 1.9e-17 95.1 98 65.3
CAN.G2381.1 Capsicum annuum HOM05D008784 ORTHO05D000683 2.4e-17 94.7 235 34.0
CAN.G4149.1 Capsicum annuum HOM05D008784 ORTHO05D000683 3.5e-16 90.9 154 42.2
CAN.G4671.1 Capsicum annuum HOM05D008784 ORTHO05D000683 4.6e-16 90.5 117 61.5
CAN.G2289.1 Capsicum annuum HOM05D008784 ORTHO05D000683 1.3e-15 89.0 313 31.3
CAN.G2026.4 Capsicum annuum HOM05D002496 ORTHO05D002787 5.6e-14 83.6 88 62.5
CAN.G567.119 Capsicum annuum HOM05D008784 ORTHO05D000683 1.2e-13 82.4 240 34.6
CAN.G1572.9 Capsicum annuum HOM05D008784 ORTHO05D000683 6.2e-13 80.1 150 38.0
CAN.G2365.3 Capsicum annuum HOM05D008784 ORTHO05D000683 8.1e-13 79.7 46 84.8
CAN.G1783.4 Capsicum annuum HOM05D002496 ORTHO05D002787 1.8e-12 78.6 48 81.2
CAN.G2141.4 Capsicum annuum HOM05D008784 ORTHO05D000683 2.0e-11 75.1 168 38.7
CAN.G202.2 Capsicum annuum HOM05D000960 ORTHO05D000683 9.9e-11 72.8 148 45.9
CAN.G2141.3 Capsicum annuum HOM05D000960 ORTHO05D000683 1.1e-09 69.3 40 82.5
CAN.G3676.1 Capsicum annuum HOM05D008784 ORTHO05D000683 2.4e-09 68.2 34 91.2
CAN.G989.11 Capsicum annuum HOM05D000011 ORTHO05D000018 4.6e-08 63.9 40 75.0
CAN.G486.1 Capsicum annuum HOM05D008784 ORTHO05D000683 3.9e-07 60.8 33 90.9


User provided reference genes

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