Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 1.3e-210 736.1 367 100.0
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 3.8e-178 628.2 371 87.1
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 1.5e-177 626.3 371 86.5
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 7.8e-155 550.8 368 77.4
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 2.4e-148 529.3 374 74.9
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 5.4e-148 528.1 293 89.8
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.3e-130 470.3 390 63.8
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 3.0e-130 469.2 390 63.6
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 2.8e-128 462.6 382 65.2
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 2.8e-128 462.6 364 67.9
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 1.8e-127 459.9 352 70.5
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 5.3e-127 458.4 384 65.4
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 9.0e-127 457.6 365 65.8
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 1.5e-126 456.8 367 66.8
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 2.0e-126 456.4 372 65.9
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 4.5e-126 455.3 377 65.0
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 1.3e-125 453.8 352 68.8
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 4.9e-125 451.8 376 64.6
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 4.9e-125 451.8 368 64.9
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 8.4e-125 451.1 377 64.7
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 2.4e-124 449.5 384 62.8
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 4.2e-124 448.7 361 65.1
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 4.2e-124 448.7 388 62.6
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 4.6e-123 445.3 364 65.9
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 7.9e-123 444.5 374 64.7
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 1.8e-122 443.4 307 72.0
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 1.8e-122 443.4 373 64.3
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 5.1e-122 441.8 366 63.1
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 8.7e-122 441.0 384 62.0
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 1.5e-121 440.3 361 65.1
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 3.3e-121 439.1 384 62.2
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 4.3e-121 438.7 372 63.7
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 2.8e-120 436.0 361 64.3
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 4.8e-120 435.3 310 71.0
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 6.2e-120 434.9 380 63.4
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 1.8e-119 433.3 368 63.3
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 6.9e-119 431.4 279 75.6
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 3.4e-118 429.1 370 62.2
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 3.4e-118 429.1 378 63.5
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 1.3e-117 427.2 367 63.8
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 2.2e-117 426.4 303 72.3
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 2.2e-117 426.4 367 63.8
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 4.9e-117 425.2 364 62.9
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 6.5e-117 424.9 375 61.6
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 6.5e-117 424.9 368 61.1
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 8.4e-117 424.5 392 61.0
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 5.5e-116 421.8 360 63.3
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 7.1e-116 421.4 362 64.1
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 9.3e-116 421.0 366 61.7
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 2.3e-114 416.4 254 79.5
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 6.7e-114 414.8 319 66.1
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 3.3e-113 412.5 359 60.7
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 2.8e-112 409.5 361 61.8
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 2.8e-112 409.5 273 72.5
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 6.3e-112 408.3 372 58.3
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 8.2e-112 407.9 264 75.0
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 2.4e-111 406.4 374 62.3
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 4.1e-111 405.6 258 76.4
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 9.0e-111 404.4 249 77.9
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 3.4e-110 402.5 299 67.6
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 5.9e-110 401.7 368 58.7
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 2.2e-109 399.8 368 60.3
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 3.8e-109 399.1 375 61.6
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 5.0e-109 398.7 325 65.2
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 6.5e-109 398.3 362 59.4
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 8.5e-109 397.9 312 64.1
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 1.4e-108 397.1 369 58.5
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 5.5e-108 395.2 284 68.7
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 7.2e-108 394.8 362 58.6
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 1.6e-107 393.7 362 60.5
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 2.7e-107 392.9 360 58.6
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 7.9e-107 391.3 360 58.6
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 7.9e-107 391.3 322 62.1
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 5.1e-106 388.7 354 59.3
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 6.7e-106 388.3 303 65.3
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 1.5e-105 387.1 361 59.3
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 1.5e-105 387.1 371 57.1
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 4.3e-105 385.6 317 62.5
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 9.7e-105 384.4 292 66.8
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 1.3e-104 384.0 314 62.1
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 3.7e-104 382.5 360 58.6
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 2.4e-103 379.8 361 57.1
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 5.3e-103 378.6 275 68.0
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 6.9e-103 378.3 407 52.1
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 1.5e-102 377.1 303 64.4
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 2.6e-102 376.3 393 53.4
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 4.2e-100 369.0 277 66.4
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 4.6e-99 365.5 275 67.3
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 9.1e-95 351.3 363 56.5
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 2.9e-85 319.7 276 58.0
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.5e-84 317.4 260 62.7
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 3.7e-80 302.8 281 59.4
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 5.9e-78 295.4 275 60.4
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 5.9e-78 295.4 360 49.2
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 2.2e-77 293.5 275 60.0
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 5.0e-77 292.4 277 59.2
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 8.5e-77 291.6 232 60.3
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 4.2e-76 289.3 241 55.2
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 2.7e-75 286.6 248 55.6
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 2.7e-70 270.0 240 52.1
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 5.9e-62 242.3 200 62.0
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.3e-61 241.1 238 47.9
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 5.0e-61 239.2 229 51.1
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.4e-55 221.1 184 62.0
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.5e-52 211.1 114 84.2
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.2e-49 201.4 217 51.6
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 2.0e-46 190.7 226 43.4
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 6.0e-46 189.1 157 52.2
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 2.3e-45 187.2 253 36.4
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.1e-42 178.3 120 72.5
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 1.9e-36 157.5 220 38.6
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 5.2e-34 149.4 212 44.8
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 1.2e-30 138.3 231 40.3
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 3.3e-28 130.2 149 52.3
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 4.7e-27 126.3 159 49.1
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.8e-26 124.4 102 64.7
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 2.9e-24 117.1 75 77.3
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 9.3e-23 112.1 125 55.2
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 2.9e-16 90.5 204 28.9
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 4.9e-16 89.7 66 68.2
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 2.5e-12 77.4 104 44.2
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 2.9e-08 63.9 142 30.3
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 3.8e-08 63.5 142 30.3
MCO05G154 Micromonas commoda HOM05D006539 ORTHO05D044332 8.4e-08 62.4 218 24.8
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 1.9e-07 61.2 210 24.8
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 3.2e-07 60.5 143 27.3
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 4.2e-07 60.1 143 29.4
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 5.5e-07 59.7 172 30.8
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 7.1e-07 59.3 167 32.9
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 1.2e-06 58.5 141 28.4
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 1.2e-06 58.5 167 32.9
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 2.1e-06 57.8 173 27.2
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 2.1e-06 57.8 150 29.3
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 2.7e-06 57.4 162 30.9
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 3.5e-06 57.0 174 25.9
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 6.0e-06 56.2 174 25.3
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 6.0e-06 56.2 174 25.3
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 6.0e-06 56.2 174 25.3
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 7.9e-06 55.8 176 24.4


User provided reference genes

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