Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 3531.9 1863 100.0
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 3116.3 1866 89.4
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 3103.9 1866 89.3
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 3014.2 1867 86.1
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2515.0 1904 72.4
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2474.5 1898 71.8
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2444.8 1872 70.3
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2407.9 1876 69.9
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2336.2 1908 68.0
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2335.8 1899 68.6
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2333.5 1910 68.1
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2318.1 1899 68.0
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2317.0 1898 68.6
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2316.6 1884 68.8
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2312.0 1887 68.2
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2310.8 1906 67.3
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2301.2 1927 66.2
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2300.8 1894 67.7
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2300.8 1895 67.1
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2298.1 1890 67.0
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2297.7 1906 67.2
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2292.7 1910 67.7
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2290.8 1897 67.5
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2290.4 1896 67.7
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2288.5 1901 67.0
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2287.7 1913 67.9
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2287.7 1933 65.4
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2287.7 1898 66.8
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2286.5 1892 66.9
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2282.7 1935 67.4
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2281.9 1907 66.1
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2271.9 1908 65.8
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2271.9 1894 66.9
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2266.5 1880 68.0
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2262.3 1893 67.2
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2258.4 1896 67.5
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2256.1 1905 66.5
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2255.7 1897 65.8
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2248.0 1883 67.0
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2231.1 1899 65.9
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2225.3 1897 65.7
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2223.7 1899 65.4
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2215.3 1974 63.7
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2213.0 1902 65.8
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2203.7 1890 65.4
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2189.5 1731 71.7
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2188.3 2114 59.6
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2184.1 1966 62.3
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2176.7 1894 63.9
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2172.9 1870 64.7
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2171.4 1866 65.7
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2169.8 1886 64.9
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2165.6 1713 68.8
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2164.4 1921 64.6
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2161.0 1997 62.2
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2159.0 1881 64.5
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2154.0 1934 63.2
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2152.5 1878 64.6
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2122.8 1742 68.8
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2118.2 1899 63.8
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2100.5 1889 63.8
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2097.4 2256 55.3
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2092.4 1889 63.7
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2088.2 1903 62.7
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 2081.2 1886 60.5
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2079.7 2106 59.2
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2075.4 1784 65.1
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2064.3 1911 62.1
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2062.0 1905 61.9
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2055.0 1852 62.3
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2050.0 1882 62.0
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2037.7 1891 61.8
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2031.9 1884 62.6
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 2025.0 1881 61.5
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2018.8 1881 61.2
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2015.4 1910 60.4
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2011.1 1881 61.0
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2007.6 1905 61.1
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 2006.5 1907 60.9
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 1996.5 1883 60.6
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1991.9 1911 60.7
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 1988.8 1861 61.2
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1981.5 1892 61.1
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1970.7 1794 62.7
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1968.0 1918 60.2
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1952.9 1240 85.2
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1928.3 1264 83.8
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1926.0 1247 78.9
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1893.2 1506 71.7
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1893.2 1890 58.7
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1824.3 1839 56.0
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1819.7 1504 68.2
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1803.9 2009 54.1
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1742.6 1980 52.3
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1629.0 1878 52.2
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1617.1 1806 52.5
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1541.2 1879 51.0
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1377.5 985 72.4
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1375.5 1206 65.4
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1323.5 1219 64.7
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1319.3 1083 67.7
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1286.9 1475 54.4
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 1263.1 674 97.3
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1127.5 850 69.2
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1105.9 949 64.9
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 2.9e-298 1029.6 1278 45.9
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 2.6e-291 1006.5 1104 57.1
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 3.4e-270 936.4 1132 51.9
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 1.0e-258 898.3 675 69.6
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 2.3e-234 817.4 541 88.4
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.4e-223 781.6 871 57.4
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 6.0e-219 766.1 1121 44.8
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 5.1e-210 736.5 1284 37.0
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 5.3e-207 726.5 975 48.8
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 6.3e-192 676.4 448 78.8
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 3.7e-176 624.0 366 88.0
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 6.5e-165 586.6 367 84.2
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 8.0e-163 579.7 373 79.1
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 2.8e-152 544.7 1246 33.2
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 9.8e-129 466.5 364 66.8
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.0e-109 403.3 238 88.7
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 8.9e-106 390.2 297 67.3
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 8.9e-106 390.2 261 80.8
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 6.0e-102 377.5 499 47.9
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.4e-90 339.7 214 77.1
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 3.4e-89 335.1 1381 24.9
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.9e-87 329.3 298 61.1
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.3e-85 323.2 555 44.9
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 6.2e-83 314.3 1525 25.0
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 8.4e-80 303.9 198 77.8
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 5.5e-71 274.6 263 56.7
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 4.1e-58 231.9 226 58.4
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 1.2e-57 230.3 170 69.4
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.1e-55 223.8 519 33.7
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 1.1e-52 213.8 190 59.5
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.2e-49 203.8 242 51.2
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 7.7e-49 201.1 170 58.8
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 3.2e-47 195.7 274 47.1
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 1.2e-46 193.7 245 49.8
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 2.3e-45 189.5 396 39.9
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 4.0e-45 188.7 163 58.3
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 1.2e-36 160.6 106 74.5
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.3e-35 157.1 224 47.8
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 3.7e-35 155.6 89 80.9
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 7.5e-28 131.3 264 40.2
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 4.9e-27 128.6 108 65.7
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 4.9e-27 128.6 118 62.7
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 7.0e-26 124.8 75 82.7
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 7.0e-26 124.8 105 66.7
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 1.3e-24 120.6 82 73.2
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 1.9e-23 116.7 69 82.6
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 1.8e-21 110.2 75 74.7
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 4.0e-21 109.0 87 63.2
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 6.4e-19 101.7 76 68.4
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 7.0e-18 98.2 128 47.7
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 5.9e-17 95.1 68 67.6
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 3.9e-16 92.4 80 61.2
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 1.9e-15 90.1 58 74.1
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 1.9e-15 90.1 58 74.1
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 1.2e-14 87.4 51 80.4
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 2.1e-14 86.7 82 54.9
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 2.6e-12 79.7 41 90.2
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 7.5e-12 78.2 36 94.4
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 6.4e-11 75.1 100 44.0
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 4.1e-10 72.4 89 44.9
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 4.1e-10 72.4 58 69.0
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 4.6e-09 68.9 65 55.4
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.0e-08 67.8 73 52.1
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 1.3e-08 67.4 58 65.5
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 3.0e-08 66.2 111 36.9
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 6.6e-08 65.1 48 68.8


User provided reference genes

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