Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2021.3 Capsicum annuum HOM05D003754 ORTHO05D028482 1.5e-55 219.2 105 100.0
CAN.G816.23 Capsicum annuum HOM05D003754 ORTHO05D028482 5.5e-45 184.1 92 95.7
CAN.G1241.25 Capsicum annuum HOM05D003754 ORTHO05D004530 1.2e-31 139.8 79 88.6
PGSC0003DMG400000337 Solanum tuberosum HOM05D003754 ORTHO05D004530 4.5e-31 137.9 73 90.4
CAN.G479.50 Capsicum annuum HOM05D003754 ORTHO05D004530 5.9e-31 137.5 71 93.0
Solyc03g115630.3 Solanum lycopersicum HOM05D003754 ORTHO05D004530 7.7e-31 137.1 79 86.1
Sopen03g034620 Solanum pennellii HOM05D003754 ORTHO05D004530 7.7e-31 137.1 79 86.1
PGSC0003DMG401024557 Solanum tuberosum HOM05D003754 ORTHO05D004530 7.7e-31 137.1 79 86.1
Nitab4.5_0000540g0290 Nicotiana tabacum HOM05D003754 ORTHO05D004530 1.7e-30 136.0 79 86.1
Nitab4.5_0008523g0020 Nicotiana tabacum HOM05D003754 ORTHO05D004530 1.7e-30 136.0 79 86.1
Peaxi162Scf00025g02016 Petunia axillaris HOM05D003754 ORTHO05D004530 1.2e-28 129.8 79 82.3
Peaxi162Scf00498g00315 Petunia axillaris HOM05D003754 ORTHO05D004530 1.6e-28 129.4 79 83.5
Oeu047648.2 Olea europaea HOM05D003754 ORTHO05D004530 1.0e-27 126.7 73 82.2
Cc07_g17390 Coffea canephora HOM05D003754 ORTHO05D004530 5.2e-27 124.4 79 78.5
Oeu037781.1 Olea europaea HOM05D003754 ORTHO05D004530 5.2e-27 124.4 71 84.5
SalBow5G2472 Salvia bowleyana HOM05D003754 ORTHO05D004530 5.2e-27 124.4 71 84.5
SalBow5G4447 Salvia bowleyana HOM05D003754 ORTHO05D004530 5.2e-27 124.4 71 84.5
ECA246G0381 Erigeron canadensis HOM05D003754 ORTHO05D004530 6.7e-27 124.0 71 84.5
Lsat_1_v5_gn_2_115701 Lactuca sativa HOM05D003754 ORTHO05D004530 6.7e-27 124.0 71 84.5
Migut.H01123 Erythranthe guttata HOM05D003754 ORTHO05D004530 8.8e-27 123.6 79 78.5
HanXRQChr05g0132711 Helianthus annuus HOM05D003754 ORTHO05D004530 8.8e-27 123.6 71 84.5
Hma1.2p1_1882F.1_g306410 Hydrangea macrophylla HOM05D003754 ORTHO05D004530 8.8e-27 123.6 79 78.5
CSS0004755 Camellia sinensis var. sinensis HOM05D003754 ORTHO05D004530 1.5e-26 122.9 73 80.8
HanXRQChr16g0507191 Helianthus annuus HOM05D003754 ORTHO05D004530 1.5e-26 122.9 71 83.1
Sed0000423 Sechium edule HOM05D003754 ORTHO05D004530 2.0e-26 122.5 72 80.6
Actinidia06664 Actinidia chinensis HOM05D003754 ORTHO05D004530 2.6e-26 122.1 71 83.1
Actinidia09819 Actinidia chinensis HOM05D003754 ORTHO05D004530 2.6e-26 122.1 71 81.7
Ah.15g092910 Amaranthus hybridus HOM05D003754 ORTHO05D004530 4.4e-26 121.3 73 80.8
Eucgr.I00242 Eucalyptus grandis HOM05D003754 ORTHO05D004530 4.4e-26 121.3 72 80.6
Hma1.2p1_0252F.1_g102755 Hydrangea macrophylla HOM05D003754 ORTHO05D004530 4.4e-26 121.3 79 77.2
Hma1.2p1_0975F.1_g243110 Hydrangea macrophylla HOM05D003754 ORTHO05D004530 4.4e-26 121.3 79 77.2
TWI79G1638 Tripterygium wilfordii HOM05D003754 ORTHO05D004530 4.4e-26 121.3 71 81.7
Lj4A856T33 Lonicera japonica HOM05D003754 ORTHO05D004530 5.7e-26 120.9 79 77.2
Glyma.06G150000 Glycine max HOM05D003754 ORTHO05D004530 7.5e-26 120.6 77 74.0
PGR142G4345 Punica granatum HOM05D003754 ORTHO05D004530 7.5e-26 120.6 72 79.2
ClCG11G013120 Citrullus lanatus HOM05D003754 ORTHO05D004530 9.7e-26 120.2 72 79.2
MELO3C011808.2 Cucumis melo HOM05D003754 ORTHO05D004530 9.7e-26 120.2 72 79.2
Gorai.007G063500 Gossypium raimondii HOM05D003754 ORTHO05D004530 9.7e-26 120.2 71 81.7
TAR625G1071 Trochodendron aralioides HOM05D003754 ORTHO05D004530 9.7e-26 120.2 71 81.7
GSVIVG01026584001 Vitis vinifera HOM05D003754 ORTHO05D004530 9.7e-26 120.2 71 81.7
MSTRG.2686 Avicennia marina HOM05D003754 ORTHO05D004530 1.3e-25 119.8 71 81.7
COL.COLO4_22427 Corchorus olitorius HOM05D003754 ORTHO05D004530 1.3e-25 119.8 71 80.3
Gohir.A11G227533 Gossypium hirsutum HOM05D003754 ORTHO05D004530 1.3e-25 119.8 71 81.7
vmacro18661 Vaccinium macrocarpon HOM05D003754 ORTHO05D004530 1.3e-25 119.8 71 81.7
Nn7g38167 Nelumbo nucifera HOM05D003754 ORTHO05D004530 1.7e-25 119.4 71 78.9
QL06p051895 Quercus lobata HOM05D003754 ORTHO05D004530 1.7e-25 119.4 71 81.7
Aqoxy1G00632 Aquilegia oxysepala HOM05D003754 ORTHO05D004530 2.2e-25 119.0 71 80.3
CANSAT01G2639 Cannabis sativa HOM05D003754 ORTHO05D004530 2.2e-25 119.0 71 81.7
CsaV3_5G029640 Cucumis sativus L. HOM05D003754 ORTHO05D004530 2.2e-25 119.0 72 77.8
Duzib264G0672 Durio zibethinus HOM05D003754 ORTHO05D004530 2.2e-25 119.0 71 80.3
Glyma.04G216000 Glycine max HOM05D003754 ORTHO05D004530 2.2e-25 119.0 71 80.3
ATR0787G147 Amborella trichopoda HOM05D003754 ORTHO05D004530 2.8e-25 118.6 72 77.8
VMungo0251G2586 Vigna mungo HOM05D003754 ORTHO05D004530 2.8e-25 118.6 71 80.3
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 3.7e-25 118.2 71 81.7
arahy.Tifrunner.gnm1.ann1.IAY1GN Arachis hypogaea HOM05D003754 ORTHO05D004530 3.7e-25 118.2 73 76.7
DCAR_014347 Daucus carota HOM05D003754 ORTHO05D004530 3.7e-25 118.2 71 80.3
Lalb_Chr13g0296421 Lupinus albus HOM05D003754 ORTHO05D004530 3.7e-25 118.2 71 78.9
Cpa.g.sc42.92 Carica papaya HOM05D003754 ORTHO05D004530 4.8e-25 117.9 71 77.5
MBI07_g22390_MAGBIO Magnolia biondii HOM05D003754 ORTHO05D004530 4.8e-25 117.9 71 77.5
Zm00001eb188530 Zea mays HOM05D003754 ORTHO05D004530 4.8e-25 117.9 72 79.2
Cfa002865 Carpinus fangiana HOM05D003754 ORTHO05D004530 6.3e-25 117.5 71 80.3
Haze_25183 Corylus avellana HOM05D003754 ORTHO05D004530 6.3e-25 117.5 71 80.3
Dinv09929 Davidia involucrata HOM05D003754 ORTHO05D004530 6.3e-25 117.5 71 80.3
Lj1g0021659 Lotus japonicus HOM05D003754 ORTHO05D004530 6.3e-25 117.5 71 78.9
RcHm_v2.0_Chr2g0150151 Rosa chinensis HOM05D003754 ORTHO05D004530 6.3e-25 117.5 71 78.9
RcHm_v2.0_Chr5g0078331 Rosa chinensis HOM05D003754 ORTHO05D004530 6.3e-25 117.5 71 78.9
Thecc.01G121700 Theobroma cacao HOM05D003754 ORTHO05D004530 6.3e-25 117.5 71 80.3
Duzib187G0686 Durio zibethinus HOM05D003754 ORTHO05D004530 8.2e-25 117.1 71 80.3
Duzib187G1293 Durio zibethinus HOM05D003754 ORTHO05D004530 8.2e-25 117.1 71 80.3
Gohir.D11G058200 Gossypium hirsutum HOM05D003754 ORTHO05D004530 8.2e-25 117.1 71 80.3
Sabra03G0052100 Salix brachista HOM05D003754 ORTHO05D004530 8.2e-25 117.1 73 78.1
HPP92_024507 Vanilla planifolia HOM05D003754 ORTHO05D004530 8.2e-25 117.1 71 77.5
HPP92_024510 Vanilla planifolia HOM05D003754 ORTHO05D004530 8.2e-25 117.1 71 77.5
Carub.0005s0630 Capsella rubella HOM05D003754 ORTHO05D004530 1.1e-24 116.7 71 80.3
Gohir.D11G231200 Gossypium hirsutum HOM05D003754 ORTHO05D004530 1.1e-24 116.7 71 80.3
Gorai.003G069700 Gossypium raimondii HOM05D003754 ORTHO05D004530 1.1e-24 116.7 71 80.3
Zm00001eb252240 Zea mays HOM05D003754 ORTHO05D004530 1.1e-24 116.7 72 77.8
FvH4_5g29030 Fragaria vesca HOM05D003754 ORTHO05D004530 1.4e-24 116.3 71 77.5
FAN08G0734 Fragaria x ananassa HOM05D003754 ORTHO05D004530 1.4e-24 116.3 71 77.5
FAN13G0594 Fragaria x ananassa HOM05D003754 ORTHO05D004530 1.4e-24 116.3 71 77.5
FAN18G2098 Fragaria x ananassa HOM05D003754 ORTHO05D004530 1.4e-24 116.3 71 77.5
Manes.13G086500 Manihot esculenta HOM05D003754 ORTHO05D004530 1.4e-24 116.3 72 76.4
Prupe.6G163300 Prunus persica HOM05D003754 ORTHO05D004530 1.4e-24 116.3 71 80.3
Sed0005502 Sechium edule HOM05D003754 ORTHO05D004530 1.4e-24 116.3 72 76.4
Glyma.05G188500 Glycine max HOM05D003754 ORTHO05D004530 1.8e-24 115.9 71 78.9
arahy.Tifrunner.gnm1.ann1.H83BDD Arachis hypogaea HOM05D003754 ORTHO05D004530 2.4e-24 115.5 71 76.1
PSO017G1739 Papaver somniferum HOM05D003754 ORTHO05D004530 2.4e-24 115.5 72 75.0
PSO675G1326 Papaver somniferum HOM05D003754 ORTHO05D004530 2.4e-24 115.5 72 75.0
Phvul.009G147600 Phaseolus vulgaris HOM05D003754 ORTHO05D004530 2.4e-24 115.5 71 77.5
VMungo1309G1400 Vigna mungo HOM05D003754 ORTHO05D004530 2.4e-24 115.5 71 77.5
CiPaw.03G124200 Carya illinoinensis HOM05D003754 ORTHO05D004530 3.1e-24 115.2 71 78.9
Gohir.A11G054600 Gossypium hirsutum HOM05D003754 ORTHO05D004530 3.1e-24 115.2 71 78.9
Psat5g063800 Pisum sativum HOM05D003754 ORTHO05D004530 3.1e-24 115.2 71 77.5
AT3G27740 Arabidopsis thaliana HOM05D003754 ORTHO05D004530 4.1e-24 114.8 71 78.9
arahy.Tifrunner.gnm1.ann1.JRXR5K Arachis hypogaea HOM05D003754 ORTHO05D004530 4.1e-24 114.8 71 77.5
EL10Ac4g10006 Beta vulgaris HOM05D003754 ORTHO05D004530 4.1e-24 114.8 71 77.5
BcaB05g24461 Brassica carinata HOM05D003754 ORTHO05D004530 4.1e-24 114.8 71 78.9
Ca_16915_v3 Cicer arietinum L. HOM05D003754 ORTHO05D004530 5.3e-24 114.4 71 76.1
MD15G1342400 Malus domestica HOM05D003754 ORTHO05D004530 5.3e-24 114.4 71 77.5
Medtr3g095490 Medicago truncatula HOM05D003754 ORTHO05D004530 5.3e-24 114.4 71 76.1
Potri.003G080900 Populus trichocarpa HOM05D003754 ORTHO05D004530 5.3e-24 114.4 72 76.4
THA.LOC104820363 Tarenaya hassleriana HOM05D003754 ORTHO05D004530 5.3e-24 114.4 71 77.5
AL5G17190 Arabidopsis lyrata HOM05D003754 ORTHO05D004530 7.0e-24 114.0 71 78.9
BcaB03g14725 Brassica carinata HOM05D003754 ORTHO05D004530 7.0e-24 114.0 71 78.9
BcaC03g15094 Brassica carinata HOM05D003754 ORTHO05D004530 7.0e-24 114.0 71 78.9
BcaC08g46397 Brassica carinata HOM05D003754 ORTHO05D004530 7.0e-24 114.0 71 78.9
A02p15970 Brassica napus HOM05D003754 ORTHO05D004530 7.0e-24 114.0 71 78.9
A07p35920 Brassica napus HOM05D003754 ORTHO05D004530 7.0e-24 114.0 71 78.9
C06p43290 Brassica napus HOM05D003754 ORTHO05D004530 7.0e-24 114.0 71 78.9
BolC2t08726H Brassica oleracea HOM05D003754 ORTHO05D004530 7.0e-24 114.0 71 78.9
BolC6t39404H Brassica oleracea HOM05D003754 ORTHO05D004530 7.0e-24 114.0 71 78.9
BraA02t06656Z Brassica rapa HOM05D003754 ORTHO05D004530 7.0e-24 114.0 71 78.9
BraA07t31175Z Brassica rapa HOM05D003754 ORTHO05D004530 7.0e-24 114.0 71 78.9
Thhalv10018601m.g Eutrema salsugineum HOM05D003754 ORTHO05D004530 7.0e-24 114.0 71 78.9
Hund00470 Selenicereus undatus HOM05D003754 ORTHO05D004530 7.0e-24 114.0 71 76.1
Sc25g0003300 Simmondsia chinensis HOM05D003754 ORTHO05D004530 7.0e-24 114.0 72 73.6
TPR.G18713 Trifolium pratense HOM05D003754 ORTHO05D004530 7.0e-24 114.0 71 76.1
TPR.G3506 Trifolium pratense HOM05D003754 ORTHO05D004530 7.0e-24 114.0 71 76.1
Atru.chr4.2901 Acer truncatum HOM05D003754 ORTHO05D004530 9.1e-24 113.6 71 74.6
Aqoxy5G02121 Aquilegia oxysepala HOM05D003754 ORTHO05D004530 9.1e-24 113.6 75 69.3
EL10Ac7g16883 Beta vulgaris HOM05D003754 ORTHO05D004530 9.1e-24 113.6 71 76.1
C02p26550 Brassica napus HOM05D003754 ORTHO05D004530 9.1e-24 113.6 71 78.9
FvH4_3g43670 Fragaria vesca HOM05D003754 ORTHO05D004530 1.2e-23 113.2 71 77.5
FAN11G0854 Fragaria x ananassa HOM05D003754 ORTHO05D004530 1.2e-23 113.2 71 77.5
FAN16G1056 Fragaria x ananassa HOM05D003754 ORTHO05D004530 1.2e-23 113.2 71 77.5
FAN21G2117 Fragaria x ananassa HOM05D003754 ORTHO05D004530 1.2e-23 113.2 71 77.5
FAN25G1759 Fragaria x ananassa HOM05D003754 ORTHO05D004530 1.2e-23 113.2 71 77.5
Lalb_Chr12g0203311 Lupinus albus HOM05D003754 ORTHO05D004530 1.2e-23 113.2 71 78.9
MD11G1021800 Malus domestica HOM05D003754 ORTHO05D004530 1.2e-23 113.2 71 77.5
Pp3c11_11760 Physcomitrium patens HOM05D003754 ORTHO05D004530 1.2e-23 113.2 71 74.6
Pp3c7_8810 Physcomitrium patens HOM05D003754 ORTHO05D004530 1.2e-23 113.2 71 74.6
Prupe.6G016000 Prunus persica HOM05D003754 ORTHO05D004530 1.6e-23 112.8 71 77.5
Sp5g24680 Schrenkiella parvula HOM05D003754 ORTHO05D004530 1.6e-23 112.8 71 77.5
CARHR038270 Cardamine hirsuta HOM05D003754 ORTHO05D004530 2.0e-23 112.5 71 77.5
Potri.001G153400 Populus trichocarpa HOM05D003754 ORTHO05D004530 2.0e-23 112.5 72 75.0
Mapoly0008s0155 Marchantia polymorpha HOM05D003754 ORTHO05D004530 2.7e-23 112.1 71 73.2
Medtr4g103830 Medicago truncatula HOM05D003754 ORTHO05D004530 2.7e-23 112.1 71 74.6
AUR62017270 Chenopodium quinoa HOM05D003754 ORTHO05D004530 4.5e-23 111.3 71 71.8
Ciclev10025660m.g Citrus clementina HOM05D003754 ORTHO05D004530 4.5e-23 111.3 71 71.8
PSO063G2422 Papaver somniferum HOM05D003754 ORTHO05D004530 4.5e-23 111.3 72 70.8
PSO170G5654 Papaver somniferum HOM05D003754 ORTHO05D004530 4.5e-23 111.3 72 70.8
AUR62010627 Chenopodium quinoa HOM05D003754 ORTHO05D004530 1.0e-22 110.2 71 73.2
MD03G1020600 Malus domestica HOM05D003754 ORTHO05D004530 1.7e-22 109.4 71 74.6
SEGI_05555 Sequoiadendron giganteum HOM05D003754 ORTHO05D004530 1.7e-22 109.4 71 71.8
CDE02G3666 Ceratophyllum demersum HOM05D003754 ORTHO05D004530 2.2e-22 109.0 71 71.8
QL10p011683 Quercus lobata HOM05D003754 ORTHO05D004530 2.2e-22 109.0 71 77.5
SGA_v2.0_scaffold47G17755 Striga asiatica HOM05D003754 ORTHO05D004530 2.9e-22 108.6 71 74.6
AagrBONN_evm.TU.Sc2ySwM_117.1845 Anthoceros agrestis HOM05D003754 ORTHO05D004530 5.0e-22 107.8 71 71.8
CDE09G1207 Ceratophyllum demersum HOM05D003754 ORTHO05D004530 5.0e-22 107.8 71 71.8
Sopen10g006870 Solanum pennellii HOM05D003754 ORTHO05D028482 8.5e-22 107.1 56 89.3
Sabra01G0123200 Salix brachista HOM05D003754 ORTHO05D004530 1.1e-21 106.7 72 72.2
SMO292G0005 Selaginella moellendorffii HOM05D003754 ORTHO05D004530 1.5e-21 106.3 71 70.4
CBR_g8394 Chara braunii HOM05D003754 ORTHO05D004530 2.5e-21 105.5 75 66.7
SMO164G0151 Selaginella moellendorffii HOM05D003754 ORTHO05D004530 2.5e-21 105.5 71 70.4
unitig_699.g19714 Utricularia gibba HOM05D003754 ORTHO05D004530 5.5e-21 104.4 66 77.3
Ciclev10006484m.g Citrus clementina HOM05D003754 ORTHO05D028482 7.2e-21 104.0 71 69.0
Cre06.g308500 Chlamydomonas reinhardtii HOM05D003754 ORTHO05D004530 1.2e-20 103.2 71 64.8
PRCOL_00005740 Prasinoderma coloniale HOM05D003754 ORTHO05D004530 7.5e-18 94.0 71 60.6
MCO05G701 Micromonas commoda HOM05D003754 ORTHO05D004530 2.8e-17 92.0 62 64.5
Haze_27195 Corylus avellana HOM05D003754 ORTHO05D004530 8.0e-12 73.9 69 53.6
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 2.8e-09 65.5 77 46.8
Haze_27203 Corylus avellana HOM05D003754 ORTHO05D004530 8.3e-09 63.9 69 46.4
arahy.Tifrunner.gnm1.ann1.9E66QM Arachis hypogaea HOM05D003754 ORTHO05D004530 7.0e-08 60.8 34 76.5
Lsat_1_v5_gn_8_97760 Lactuca sativa HOM05D003754 ORTHO05D004530 1.0e-06 57.0 107 38.3
Cfa021606 Carpinus fangiana HOM05D003754 ORTHO05D004530 6.6e-06 54.3 64 42.2


User provided reference genes

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