Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 5.2e-243 844.0 427 100.0
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.5e-194 682.9 430 81.2
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.9e-190 668.3 431 79.1
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 5.1e-182 641.3 424 75.5
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 8.7e-182 640.6 421 75.8
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.1e-181 640.2 427 76.1
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 1.5e-181 639.8 424 74.5
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 1.5e-181 639.8 424 75.5
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 3.7e-180 635.2 430 74.0
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 3.7e-180 635.2 430 74.2
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 6.2e-180 634.4 430 74.0
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 2.2e-177 625.9 424 74.8
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 1.1e-173 613.6 423 73.0
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 1.5e-173 613.2 424 72.2
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 1.3e-172 610.1 424 71.5
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 1.4e-171 606.7 420 75.5
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 1.2e-170 603.6 423 72.1
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 2.6e-170 602.4 425 70.8
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 3.4e-170 602.1 430 69.8
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 3.4e-170 602.1 433 70.9
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 5.5e-168 594.7 427 70.7
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 1.6e-167 593.2 425 69.4
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 2.7e-167 592.4 424 69.8
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 3.6e-167 592.0 423 70.2
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 7.9e-167 590.9 424 69.3
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.0e-166 590.5 423 70.4
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 1.4e-166 590.1 421 69.8
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 2.3e-166 589.3 423 70.0
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 3.0e-166 589.0 424 69.3
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 6.7e-166 587.8 423 69.5
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 6.7e-166 587.8 421 68.6
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 1.1e-165 587.0 423 69.0
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.5e-165 586.6 423 69.3
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 1.5e-165 586.6 422 70.6
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 4.3e-165 585.1 430 68.6
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 4.3e-165 585.1 424 67.5
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 4.3e-165 585.1 423 69.5
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 5.7e-165 584.7 424 68.6
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 9.7e-165 583.9 424 68.6
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 2.8e-164 582.4 424 67.9
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 4.8e-164 581.6 423 68.3
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 1.1e-163 580.5 423 68.8
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.4e-163 580.1 420 68.8
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.4e-163 580.1 423 68.6
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.8e-163 579.7 423 68.8
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 1.8e-163 579.7 423 69.0
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 1.8e-163 579.7 424 68.4
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 3.1e-163 578.9 423 69.7
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 4.1e-163 578.6 423 67.8
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.0e-162 576.2 423 67.4
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 7.7e-162 574.3 428 67.1
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 1.0e-161 573.9 424 68.6
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 1.7e-161 573.2 423 68.8
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.7e-161 573.2 423 67.1
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 2.2e-161 572.8 428 68.0
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 2.2e-161 572.8 420 67.9
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 3.8e-161 572.0 423 67.1
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 3.8e-161 572.0 437 69.3
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 1.1e-160 570.5 425 69.2
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 2.5e-160 569.3 424 68.9
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 4.7e-159 565.1 423 66.9
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 3.0e-158 562.4 424 67.9
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.0e-158 562.4 424 66.3
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 3.9e-158 562.0 425 67.1
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 6.7e-158 561.2 430 69.8
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 5.7e-157 558.1 432 67.4
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 7.4e-157 557.8 431 65.7
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 1.7e-156 556.6 425 66.8
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 7.0e-155 551.2 425 66.4
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 1.2e-154 550.4 422 65.6
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.5e-154 550.1 420 64.3
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 7.7e-154 547.7 457 63.0
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.0e-153 547.4 465 61.1
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 3.8e-153 545.4 423 66.7
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 8.5e-153 544.3 402 68.4
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.4e-152 543.5 427 63.2
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 3.2e-152 542.3 423 66.4
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.2e-151 540.4 424 64.6
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 2.3e-150 536.2 425 65.4
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 5.2e-150 535.0 425 64.0
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 3.3e-149 532.3 425 63.8
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 3.3e-149 532.3 378 72.8
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 4.4e-149 531.9 424 63.7
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 1.3e-148 530.4 424 63.7
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 2.8e-148 529.3 421 61.3
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 8.2e-148 527.7 457 61.5
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 1.1e-147 527.3 422 64.2
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 1.1e-147 527.3 422 64.2
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 1.1e-147 527.3 420 64.3
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 1.4e-147 526.9 425 63.5
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 9.1e-147 524.2 419 63.2
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 9.1e-147 524.2 421 63.2
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 1.6e-146 523.5 425 64.2
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 1.7e-145 520.0 425 63.3
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 3.8e-145 518.8 424 63.7
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 1.6e-143 513.5 424 62.7
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 4.0e-142 508.8 424 61.6
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 2.0e-141 506.5 423 62.2
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.6e-141 506.1 422 61.6
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 4.4e-141 505.4 421 61.3
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 1.7e-140 503.4 424 61.3
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 2.8e-140 502.7 421 61.3
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 2.8e-140 502.7 421 60.8
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 2.8e-140 502.7 421 60.8
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 2.8e-140 502.7 424 61.3
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 4.8e-140 501.9 424 61.6
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 1.4e-139 500.4 425 61.2
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 1.4e-139 500.4 424 61.6
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 1.4e-139 500.4 311 79.1
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 2.4e-139 499.6 324 76.2
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 3.1e-139 499.2 383 66.1
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 7.0e-139 498.0 421 60.1
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 2.7e-138 496.1 421 59.9
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 3.5e-138 495.7 425 60.0
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 1.7e-137 493.4 452 60.0
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 2.1e-135 486.5 387 64.6
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 4.7e-135 485.3 422 61.1
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 1.2e-133 480.7 356 66.0
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.2e-132 476.5 423 57.7
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 5.5e-128 461.8 423 57.0
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 5.7e-125 451.8 445 54.6
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 5.7e-125 451.8 426 54.5
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 2.7e-122 443.0 425 53.4
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 2.7e-122 443.0 425 53.9
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 2.3e-121 439.9 450 52.4
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 1.2e-117 427.6 388 60.3
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 4.0e-110 402.5 399 56.1
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 5.4e-107 392.1 427 48.9
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 2.8e-103 379.8 241 79.7
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 6.2e-103 378.6 239 79.1
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 1.1e-99 367.9 355 56.9
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 3.9e-97 359.4 323 58.8
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 1.9e-96 357.1 356 55.9
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.9e-96 357.1 283 62.5
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 6.6e-89 332.0 432 47.9
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 6.9e-70 268.9 435 38.4
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 4.6e-66 256.1 214 63.6
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 1.1e-64 251.5 324 46.6
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 2.0e-61 240.7 192 67.7
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 2.3e-57 227.3 334 38.3
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 1.1e-54 218.4 360 40.8
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 4.5e-53 213.0 195 59.0
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 2.2e-47 194.1 305 42.0
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 8.2e-47 192.2 194 53.6
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 8.5e-44 182.2 139 62.6
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 1.4e-38 164.9 249 43.4
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 2.4e-30 137.5 329 30.1
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 1.6e-29 134.8 105 65.7
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.3e-28 131.7 172 44.8
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.7e-23 114.8 119 46.2
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 4.8e-23 113.2 78 70.5
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 4.8e-23 113.2 78 70.5
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 6.3e-23 112.8 166 38.6
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 7.0e-22 109.4 76 65.8
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 2.7e-18 97.4 327 24.2
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 2.8e-15 87.4 48 87.5
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.2e-10 72.0 50 72.0
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 1.0e-09 68.9 53 69.8
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 6.8e-09 66.2 65 55.4
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 4.4e-08 63.5 49 65.3
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 5.7e-08 63.2 75 46.7
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 3.7e-07 60.5 35 68.6
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 7.0e-06 56.2 67 43.3


User provided reference genes

Program Settings