Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 2.8e-162 575.5 352 100.0
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 3.1e-124 449.1 348 72.1
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 6.6e-119 431.4 353 68.0
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 1.4e-116 423.7 375 64.5
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 8.9e-116 421.0 375 64.3
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.3e-110 402.5 366 63.4
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.6e-107 392.9 342 65.2
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.6e-104 382.1 300 67.7
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 3.7e-85 319.3 352 50.6
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 6.3e-85 318.5 339 51.0
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.1e-84 317.8 363 49.9
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 2.2e-82 310.1 341 50.1
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 1.4e-81 307.4 299 53.8
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 5.5e-81 305.4 341 50.4
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 3.9e-79 299.3 361 47.9
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 1.9e-78 297.0 358 45.0
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 9.7e-78 294.7 368 47.3
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.3e-77 294.3 344 46.8
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 3.7e-77 292.7 344 47.1
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 1.8e-76 290.4 341 46.6
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 2.0e-75 287.0 342 46.5
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 5.9e-75 285.4 342 47.4
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 6.5e-74 282.0 341 46.6
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 8.5e-74 281.6 341 46.0
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 5.5e-73 278.9 307 49.5
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 7.2e-73 278.5 303 47.5
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.1e-72 276.9 341 46.6
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 3.6e-72 276.2 341 46.0
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.0e-71 274.6 348 44.0
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 1.0e-71 274.6 346 42.5
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 1.4e-71 274.2 341 44.9
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.3e-71 273.5 352 51.7
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 3.9e-71 272.7 332 46.7
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 5.1e-71 272.3 354 43.2
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 6.7e-71 271.9 345 44.9
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 2.0e-70 270.4 349 44.4
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 2.5e-70 270.0 343 45.8
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 7.4e-70 268.5 346 44.2
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.3e-69 267.7 332 45.2
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.7e-69 267.3 336 43.2
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 4.8e-69 265.8 359 42.9
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 6.3e-69 265.4 342 45.0
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 8.2e-69 265.0 332 45.5
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 8.2e-69 265.0 332 45.2
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 2.4e-68 263.5 348 43.1
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 9.1e-68 261.5 341 44.0
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.2e-67 261.2 398 42.2
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 1.5e-67 260.8 344 42.2
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 1.5e-67 260.8 300 46.3
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 2.6e-67 260.0 336 44.3
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 5.9e-67 258.8 341 44.0
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 1.0e-66 258.1 341 43.7
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 1.3e-66 257.7 384 39.6
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 5.0e-66 255.8 331 42.9
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 6.5e-66 255.4 344 43.3
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 6.5e-66 255.4 341 43.1
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 8.5e-66 255.0 341 41.9
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 1.1e-65 254.6 341 43.1
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 1.4e-65 254.2 349 43.0
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 7.2e-65 251.9 250 61.6
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 2.1e-64 250.4 228 65.4
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.0e-63 248.1 339 42.5
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 5.1e-63 245.7 342 40.6
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 5.1e-63 245.7 395 39.2
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 5.1e-63 245.7 340 42.6
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 6.7e-63 245.4 333 44.4
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.7e-61 240.7 332 42.5
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 2.2e-61 240.4 341 40.8
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 8.2e-61 238.4 318 44.0
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.8e-60 237.3 306 44.1
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 1.8e-60 237.3 304 40.1
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 3.1e-60 236.5 344 41.6
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 4.1e-60 236.1 361 40.2
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 7.0e-60 235.3 296 43.9
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 9.1e-60 235.0 304 39.8
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 9.1e-60 235.0 304 39.8
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 1.2e-59 234.6 322 41.6
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 2.0e-59 233.8 339 40.4
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.0e-59 233.8 494 33.6
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.6e-59 233.4 309 43.0
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 3.5e-59 233.0 349 40.7
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 6.5e-58 228.8 312 43.3
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 6.5e-58 228.8 342 39.5
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 8.5e-58 228.4 323 42.4
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.5e-57 227.6 293 43.7
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 5.5e-57 225.7 299 40.8
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 2.1e-56 223.8 323 39.3
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.1e-56 223.8 311 40.5
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 2.7e-56 223.4 339 40.7
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 2.7e-56 223.4 297 41.8
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 3.6e-56 223.0 311 40.5
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.0e-55 221.5 339 38.9
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 1.0e-55 221.5 306 42.8
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 2.3e-55 220.3 340 39.1
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.2e-55 219.2 187 66.3
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 6.7e-55 218.8 343 39.9
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 2.6e-54 216.9 342 38.9
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 3.3e-54 216.5 314 38.2
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 7.5e-54 215.3 347 38.0
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 9.7e-54 214.9 342 37.1
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 9.7e-54 214.9 342 38.3
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 9.7e-54 214.9 342 38.6
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 1.7e-53 214.2 330 37.6
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 3.7e-53 213.0 346 37.6
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.4e-52 211.1 302 39.7
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 1.4e-52 211.1 343 36.2
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.4e-52 211.1 327 38.5
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.7e-51 206.8 343 37.9
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 7.7e-51 205.3 230 48.3
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 2.2e-50 203.8 343 37.9
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.8e-50 203.0 343 38.2
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 1.0e-47 194.9 262 43.1
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.2e-46 191.4 149 68.5
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 4.8e-45 186.0 223 47.1
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 6.3e-45 185.7 335 35.8
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 6.3e-45 185.7 242 42.6
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 2.4e-44 183.7 251 41.8
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.6e-43 181.0 301 33.9
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 3.5e-43 179.9 341 34.6
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 4.5e-43 179.5 223 46.2
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 4.4e-38 162.9 256 38.7
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 8.3e-37 158.7 128 62.5
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.4e-36 157.9 179 45.8
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.7e-35 153.7 207 41.5
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 3.8e-34 149.8 334 33.2
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 8.6e-34 148.7 126 55.6
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 4.3e-33 146.4 229 40.2
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 5.6e-33 146.0 233 39.9
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.2e-29 134.0 192 40.6
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.8e-28 131.0 301 28.9
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.5e-25 121.3 203 36.5
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 8.9e-23 112.1 230 33.9
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 7.0e-20 102.4 115 49.6
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.2e-19 101.7 237 32.5
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 7.8e-19 99.0 344 25.0
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 1.3e-18 98.2 261 26.8
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.9e-18 96.7 301 28.6
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.1e-17 95.1 111 48.6
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.6e-16 91.3 96 42.7
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 2.1e-16 90.9 298 25.2
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 1.4e-15 88.2 305 22.6
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 1.8e-15 87.8 316 27.2
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 2.0e-14 84.3 118 44.1
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 8.3e-13 79.0 60 65.0
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 2.4e-12 77.4 84 41.7
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.2e-12 77.0 60 63.3
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.0e-10 72.0 158 29.7
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 1.3e-10 71.6 151 28.5
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 3.9e-10 70.1 60 56.7
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 5.1e-10 69.7 59 57.6
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 5.1e-10 69.7 59 57.6
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 5.1e-10 69.7 60 56.7
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 3.3e-09 67.0 59 55.9
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 3.3e-09 67.0 38 76.3
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 8.1e-08 62.4 150 28.0
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 2.0e-06 57.8 57 49.1
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 7.6e-06 55.8 113 35.4


User provided reference genes

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