Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 5.5e-309 1063.5 559 100.0
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 1.2e-263 912.9 563 87.6
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.3e-262 909.4 563 86.9
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 1.8e-259 899.0 594 82.8
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 5.5e-253 877.5 565 85.0
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 4.0e-243 844.7 577 80.9
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 1.5e-226 789.6 561 78.1
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 2.2e-172 609.8 496 65.5
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 3.1e-155 552.7 524 58.2
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 9.1e-155 551.2 523 57.7
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 1.5e-149 533.9 561 54.0
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 1.2e-146 524.2 496 58.1
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.3e-145 520.8 517 54.0
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.1e-143 513.5 565 53.1
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 1.4e-142 510.8 548 55.1
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 1.8e-142 510.4 524 56.3
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 3.0e-142 509.6 467 60.4
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 6.8e-142 508.4 511 54.8
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 6.8e-142 508.4 579 50.9
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 1.2e-141 507.7 517 55.7
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 1.2e-141 507.7 515 56.1
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 4.4e-141 505.8 517 55.7
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 2.2e-140 503.4 532 53.6
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 2.2e-140 503.4 532 52.3
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.8e-139 500.4 510 55.7
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.4e-139 500.0 517 54.4
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 3.1e-139 499.6 524 54.0
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 4.1e-139 499.2 517 54.0
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.6e-138 497.3 511 54.6
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 3.5e-138 496.1 494 56.5
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 5.9e-138 495.4 582 50.9
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 2.3e-137 493.4 499 53.3
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 2.3e-137 493.4 502 55.4
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 5.5e-136 488.8 494 55.3
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 6.8e-134 481.9 515 52.6
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 1.3e-132 477.6 526 52.5
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 2.2e-132 476.9 525 51.4
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.2e-130 471.1 502 52.8
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 1.6e-130 470.7 519 53.2
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 4.5e-130 469.2 503 52.3
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 1.0e-129 468.0 422 57.6
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 2.3e-129 466.8 557 48.3
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 1.1e-128 464.5 512 52.0
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 2.5e-128 463.4 568 48.4
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 4.3e-128 462.6 508 52.0
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 2.8e-127 459.9 493 52.9
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 2.8e-127 459.9 493 52.9
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 6.1e-127 458.8 512 51.0
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 2.3e-126 456.8 512 50.8
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 5.8e-125 452.2 485 52.0
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 5.8e-125 452.2 580 48.3
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 9.8e-125 451.4 513 49.3
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 2.9e-124 449.9 519 49.1
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 6.4e-124 448.7 515 50.5
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 2.4e-123 446.8 563 47.6
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 4.6e-122 442.6 504 48.8
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 4.6e-122 442.6 548 48.9
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 6.0e-122 442.2 511 48.9
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 1.5e-120 437.6 563 45.5
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 4.3e-120 436.0 520 49.2
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 4.3e-120 436.0 503 48.1
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 9.5e-120 434.9 515 47.6
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.4e-118 431.0 440 56.4
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 3.1e-118 429.9 449 53.2
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 3.1e-118 429.9 512 48.2
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 2.9e-116 423.3 517 48.7
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 7.0e-115 418.7 495 48.9
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 3.0e-113 413.3 423 55.1
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 8.6e-113 411.8 492 48.8
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 1.1e-112 411.4 439 52.4
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 6.2e-111 405.6 423 54.4
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.8e-110 402.1 514 45.3
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 1.5e-109 401.0 422 51.9
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.5e-109 401.0 555 44.7
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 3.4e-109 399.8 517 45.3
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 3.7e-108 396.4 495 47.7
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 8.3e-108 395.2 504 47.0
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 5.4e-107 392.5 543 43.8
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 7.8e-106 388.7 507 46.5
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 1.7e-105 387.5 473 48.2
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 8.6e-105 385.2 517 44.5
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.1e-104 384.8 510 45.9
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.9e-104 384.0 525 43.8
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 9.5e-104 381.7 563 42.5
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 2.0e-101 374.0 420 52.4
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 3.4e-101 373.2 471 44.6
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 1.3e-100 371.3 546 42.9
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.7e-100 370.9 525 42.7
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 4.2e-99 366.3 480 45.6
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 3.5e-98 363.2 504 43.8
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 6.0e-98 362.5 504 42.7
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 6.0e-98 362.5 393 54.5
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.0e-97 361.7 502 43.8
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 1.0e-97 361.7 515 43.1
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 2.3e-97 360.5 506 43.5
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 3.0e-97 360.1 507 44.2
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 3.0e-97 360.1 461 46.2
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 5.1e-97 359.4 506 43.5
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 5.1e-97 359.4 506 43.5
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.4e-94 351.3 493 42.6
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 1.2e-93 348.2 337 53.7
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 4.4e-93 346.3 488 43.6
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 5.1e-89 332.8 240 67.1
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.6e-87 326.6 339 55.2
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 3.2e-83 313.5 516 39.7
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 1.2e-82 311.6 498 39.8
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.8e-81 307.8 511 40.3
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 3.9e-81 306.6 519 38.2
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.1e-78 298.5 497 37.8
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 9.6e-72 275.4 338 50.3
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 9.0e-70 268.9 284 53.9
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 1.0e-68 265.4 317 51.7
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 5.1e-65 253.1 331 49.2
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 9.7e-64 248.8 520 35.4
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 1.3e-63 248.4 175 68.0
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 4.2e-59 233.4 272 48.5
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.1e-58 229.6 362 40.3
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 1.6e-50 204.9 325 41.5
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.5e-45 188.3 336 35.7
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 5.9e-45 186.4 139 64.0
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 1.3e-44 185.3 374 35.0
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 3.8e-44 183.7 248 41.5
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 7.2e-43 179.5 309 36.2
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 2.4e-38 164.5 312 34.6
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.0e-37 161.4 310 33.5
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 3.8e-36 157.1 310 32.9
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 9.4e-35 152.5 227 39.2
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.2e-29 135.6 89 66.3
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.2e-29 135.6 89 66.3
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.2e-29 135.6 280 32.5
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 7.7e-29 132.9 213 36.6
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 2.9e-28 131.0 148 50.0
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.6e-26 125.2 139 46.8
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 7.0e-22 109.8 342 26.9
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.5e-19 100.1 270 32.6
PGSC0003DMG401012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 7.2e-19 99.8 103 72.8
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 9.5e-19 99.4 272 30.1
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-17 94.7 395 24.8
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 6.8e-17 93.2 508 22.6
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 6.8e-17 93.2 508 22.6
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 6.8e-17 93.2 508 22.6
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.6e-16 91.3 147 44.2
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 7.5e-16 89.7 264 27.3
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 7.5e-16 89.7 264 27.3
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 4.7e-10 70.5 54 55.6
Lsat_1_v5_gn_6_47440 Lactuca sativa HOM05D004947 ORTHO05D006077 8.3e-07 59.7 71 54.9
MCO05G196 Micromonas commoda HOM05D004947 ORTHO05D006077 2.4e-06 58.2 208 24.5


User provided reference genes

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