Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 8.6e-290 999.6 495 100.0
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 2.6e-278 961.4 495 95.6
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 6.4e-277 956.8 495 94.7
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 1.2e-275 952.6 495 94.7
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 3.5e-275 951.0 495 95.2
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.9e-268 928.7 510 91.2
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 1.5e-265 919.1 506 89.7
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 2.8e-248 861.7 497 83.9
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 3.6e-248 861.3 497 83.5
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 4.0e-247 857.8 497 83.5
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 1.2e-246 856.3 493 83.8
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 5.8e-246 854.0 489 84.5
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 7.6e-246 853.6 494 83.4
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 1.3e-245 852.8 492 84.6
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 1.7e-245 852.4 491 83.5
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 8.4e-245 850.1 493 83.4
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 1.1e-244 849.7 492 83.3
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 1.4e-244 849.4 492 83.1
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 2.4e-244 848.6 498 83.7
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 3.2e-244 848.2 489 83.4
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 4.2e-244 847.8 491 83.5
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 4.2e-244 847.8 493 84.4
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 7.1e-244 847.0 492 83.5
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 1.2e-243 846.3 496 83.9
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 1.6e-243 845.9 495 82.8
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 2.1e-243 845.5 496 83.5
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 2.7e-243 845.1 493 82.8
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 2.7e-243 845.1 491 82.7
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 3.5e-243 844.7 493 83.4
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 4.6e-243 844.3 493 84.0
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 6.0e-243 844.0 493 83.4
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.3e-242 842.8 492 83.5
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.8e-242 842.4 495 82.4
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 8.7e-242 840.1 495 82.6
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.1e-241 839.7 495 82.4
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.1e-241 839.7 495 81.8
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.5e-241 839.3 491 83.3
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 2.5e-241 838.6 484 83.9
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 4.3e-241 837.8 496 82.9
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 5.6e-241 837.4 494 83.0
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 7.4e-241 837.0 496 81.9
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 9.6e-241 836.6 496 82.5
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 1.6e-240 835.9 496 82.1
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 2.1e-240 835.5 487 82.5
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.1e-240 835.5 491 82.9
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 3.6e-240 834.7 494 82.6
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 6.2e-240 833.9 491 82.7
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 1.1e-239 833.2 493 82.2
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.4e-239 832.8 495 82.0
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.4e-239 832.8 493 81.9
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 1.8e-239 832.4 497 81.9
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 3.1e-239 831.6 491 82.1
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 1.5e-238 829.3 495 80.8
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 2.0e-238 828.9 531 78.7
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 2.6e-238 828.6 496 81.2
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.4e-238 828.2 491 81.9
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.5e-238 827.8 491 81.7
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 4.5e-238 827.8 492 81.9
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.3e-237 826.2 491 81.7
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 3.8e-237 824.7 498 81.1
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 4.9e-237 824.3 492 81.5
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 1.6e-235 819.3 487 82.5
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 2.7e-235 818.5 488 82.4
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 6.0e-235 817.4 493 80.3
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 1.0e-234 816.6 494 80.4
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 1.3e-234 816.2 494 80.8
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 5.1e-234 814.3 494 80.4
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 5.1e-234 814.3 494 80.6
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.1e-233 813.1 497 80.9
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.9e-233 812.4 479 82.0
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 2.5e-233 812.0 530 76.2
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 4.3e-233 811.2 487 81.9
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 5.6e-233 810.8 492 81.1
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 7.4e-233 810.4 493 79.5
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.3e-232 809.7 473 82.5
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 1.6e-232 809.3 494 80.8
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 2.8e-232 808.5 494 80.8
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 2.8e-232 808.5 495 79.4
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 2.4e-231 805.4 496 79.6
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 3.1e-231 805.1 493 79.1
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 5.3e-231 804.3 495 78.4
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 1.5e-230 802.7 498 78.9
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 4.5e-230 801.2 489 80.6
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 5.8e-230 800.8 491 80.4
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 5.8e-230 800.8 492 78.3
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 7.6e-230 800.4 491 80.7
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 1.0e-229 800.0 491 78.8
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.3e-229 799.7 495 78.0
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 1.1e-228 796.6 484 80.6
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 2.5e-228 795.4 491 79.0
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 4.2e-228 794.7 491 78.4
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 5.5e-228 794.3 490 78.8
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 5.5e-228 794.3 490 78.6
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 5.5e-228 794.3 493 78.3
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.6e-227 792.7 494 77.5
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 2.1e-227 792.3 494 78.3
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 1.8e-226 789.3 488 78.1
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 8.7e-226 786.9 498 77.3
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 8.7e-226 786.9 494 78.7
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 3.7e-224 781.6 490 77.6
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.2e-219 766.5 491 77.0
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 4.6e-219 764.6 488 77.0
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 1.9e-217 759.2 443 83.3
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 1.8e-215 752.7 513 73.7
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 1.7e-213 746.1 426 82.9
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 2.9e-213 745.3 436 83.5
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 2.9e-213 745.3 441 81.9
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 1.4e-212 743.0 494 74.7
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 9.7e-209 730.3 443 81.7
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 2.4e-207 725.7 444 79.5
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 2.9e-205 718.8 491 71.7
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 1.8e-202 709.5 439 79.3
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 1.2e-198 696.8 485 71.5
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 7.7e-198 694.1 487 69.0
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 3.2e-196 688.7 383 87.2
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 3.2e-188 662.1 491 70.3
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 3.2e-188 662.1 404 79.7
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 8.3e-184 647.5 493 67.5
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 3.5e-182 642.1 471 71.1
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 6.1e-179 631.3 506 62.8
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 1.4e-178 630.2 381 80.8
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.8e-177 624.0 385 79.7
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 2.8e-171 605.9 493 65.1
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 2.3e-170 602.8 386 77.7
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 4.1e-159 565.5 461 66.4
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 7.8e-158 561.2 348 79.0
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 2.3e-157 559.7 382 73.0
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 8.1e-147 524.6 529 51.4
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.9e-137 491.1 266 88.7
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 2.5e-124 449.9 600 44.3
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 2.2e-120 436.8 253 83.8
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 1.2e-113 414.5 255 79.2
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.5e-108 397.5 228 85.1
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 1.8e-106 390.6 301 67.1
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.8e-106 390.6 482 48.5
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.4e-106 390.2 238 77.3
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 6.9e-106 388.7 434 50.5
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 2.4e-98 363.6 303 66.0
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 5.3e-98 362.5 253 69.6
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 5.7e-92 342.4 237 72.6
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.8e-91 339.3 312 59.3
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 1.5e-84 317.8 237 67.1
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 5.5e-79 299.3 249 64.3
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 2.0e-60 237.7 159 72.3
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 2.0e-57 227.6 260 50.8
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 9.5e-55 218.8 150 72.7
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 7.0e-50 202.6 300 45.0
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 8.6e-48 195.7 103 88.3
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 2.6e-44 184.1 104 85.6
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 3.4e-44 183.7 96 87.5
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 5.8e-44 183.0 151 65.6
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 7.8e-41 172.6 146 58.2
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 1.7e-40 171.4 117 70.9
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 6.2e-38 162.9 148 56.8
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 4.3e-31 140.2 75 86.7
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 2.8e-30 137.5 161 47.8
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 1.2e-28 132.1 79 75.9
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 1.6e-25 121.7 85 68.2
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 3.2e-18 97.4 93 55.9
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 2.3e-16 91.3 61 78.7
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 5.1e-16 90.1 74 60.8
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 2.4e-10 71.2 36 86.1
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 5.4e-10 70.1 51 66.7
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 4.6e-09 67.0 50 64.0
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 3.3e-07 60.8 30 83.3
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 6.2e-06 56.6 38 73.7


User provided reference genes

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