Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 6.3e-126 454.1 231 100.0
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 6.7e-112 407.5 222 92.8
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 2.2e-107 392.5 231 88.7
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 3.3e-103 378.6 231 85.7
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 1.7e-102 376.3 231 85.3
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 6.5e-91 337.8 231 78.4
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 1.9e-82 309.7 192 85.4
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 1.4e-80 303.5 225 74.7
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 3.5e-76 288.9 231 65.8
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 7.8e-76 287.7 243 65.8
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 1.8e-72 276.6 231 64.1
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 2.3e-72 276.2 231 64.5
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 7.5e-71 271.2 231 62.3
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 1.4e-69 266.9 224 64.7
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 3.2e-69 265.8 231 61.5
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.0e-68 263.1 231 62.3
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.0e-68 263.1 231 62.3
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 6.0e-68 261.5 231 61.9
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 1.7e-67 260.0 231 61.0
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 1.1e-66 257.3 231 61.0
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 4.3e-66 255.4 231 59.3
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.6e-65 253.4 232 59.9
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 2.8e-65 252.7 228 58.3
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 1.1e-64 250.8 242 57.0
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 9.2e-61 237.7 232 53.4
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 6.0e-60 235.0 231 51.9
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 1.3e-59 233.8 231 50.6
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 3.9e-59 232.3 259 49.4
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 1.5e-58 230.3 231 52.8
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 1.9e-58 229.9 281 50.9
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 4.3e-58 228.8 231 51.5
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 9.5e-58 227.6 230 50.4
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 1.2e-57 227.3 157 75.2
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 4.7e-57 225.3 235 53.2
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 6.2e-57 224.9 233 52.4
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 8.1e-57 224.6 232 51.3
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 2.3e-56 223.0 232 50.9
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 2.3e-56 223.0 231 49.8
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 5.2e-56 221.9 196 60.2
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 8.9e-56 221.1 232 50.4
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 1.2e-55 220.7 227 48.9
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 1.5e-55 220.3 233 50.6
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 2.0e-55 219.9 231 49.4
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 2.6e-55 219.5 230 49.6
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 4.4e-55 218.8 235 51.5
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.5e-55 218.0 234 48.7
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 7.5e-55 218.0 234 48.7
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 7.5e-55 218.0 229 48.9
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 7.5e-55 218.0 231 47.2
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 9.9e-55 217.6 230 49.1
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.7e-54 216.9 230 48.7
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 1.7e-54 216.9 230 50.9
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 1.7e-54 216.9 234 49.1
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 2.9e-54 216.1 234 50.4
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 3.7e-54 215.7 227 48.0
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 3.7e-54 215.7 230 48.3
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 6.4e-54 214.9 231 48.9
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 6.4e-54 214.9 231 50.6
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.1e-53 214.2 229 48.5
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 1.1e-53 214.2 231 46.8
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 3.2e-53 212.6 235 48.5
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 3.2e-53 212.6 235 50.6
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 5.4e-53 211.8 231 50.6
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 3.5e-52 209.1 232 49.6
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 3.5e-52 209.1 233 46.4
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 6.0e-52 208.4 232 49.6
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.0e-52 208.4 234 47.9
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 6.0e-52 208.4 234 47.9
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 6.0e-52 208.4 222 47.3
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 7.8e-52 208.0 229 47.6
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 1.0e-51 207.6 233 48.1
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.3e-51 207.2 233 48.9
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.3e-51 207.2 233 46.8
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 2.3e-51 206.5 235 50.2
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 3.0e-51 206.1 223 48.0
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 3.0e-51 206.1 224 47.3
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 3.0e-51 206.1 233 45.1
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 3.0e-51 206.1 231 49.8
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.9e-51 205.7 224 47.8
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 5.1e-51 205.3 229 46.7
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 6.6e-51 204.9 232 49.1
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 6.6e-51 204.9 232 49.1
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 6.6e-51 204.9 224 47.8
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.6e-51 204.9 234 47.0
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 8.6e-51 204.5 227 45.4
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 1.5e-50 203.8 235 49.4
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 1.9e-50 203.4 233 47.2
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 5.6e-50 201.8 235 48.9
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 7.3e-50 201.4 235 46.8
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 9.5e-50 201.1 226 47.3
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 1.2e-49 200.7 235 48.5
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 1.2e-49 200.7 234 47.0
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 2.8e-49 199.5 235 47.7
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 2.8e-49 199.5 233 47.6
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 3.6e-49 199.1 205 51.2
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 3.6e-49 199.1 226 45.6
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 6.2e-49 198.4 235 47.7
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 6.2e-49 198.4 235 47.7
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 8.1e-49 198.0 225 46.7
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 8.1e-49 198.0 232 47.4
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 8.1e-49 198.0 233 46.4
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 1.1e-48 197.6 216 50.0
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 1.4e-48 197.2 235 47.2
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 4.4e-47 192.2 226 48.7
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 7.6e-47 191.4 230 43.0
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 1.7e-46 190.3 296 40.9
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 2.9e-46 189.5 226 47.8
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 4.9e-46 188.7 253 44.7
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 6.4e-46 188.3 233 44.6
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.1e-45 187.6 231 42.0
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.4e-45 187.2 222 47.3
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 7.8e-44 181.4 201 48.3
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 1.1e-42 177.6 223 42.6
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 3.3e-42 176.0 228 44.7
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 3.3e-42 176.0 231 41.6
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 3.3e-42 176.0 231 41.6
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 2.8e-41 172.9 222 41.0
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 4.7e-41 172.2 226 43.4
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 1.1e-40 171.0 133 63.9
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 1.2e-39 167.5 228 41.2
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 2.6e-39 166.4 228 43.0
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 2.6e-39 166.4 131 61.8
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 5.8e-39 165.2 144 54.9
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 3.8e-38 162.5 227 40.1
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 9.3e-37 157.9 112 65.2
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 6.0e-36 155.2 229 38.0
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 3.9e-35 152.5 185 49.7
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 2.5e-34 149.8 231 37.2
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 4.8e-33 145.6 228 35.1
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 8.1e-33 144.8 181 42.5
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.1e-32 144.4 115 61.7
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 3.4e-31 139.4 110 60.0
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 2.2e-30 136.7 187 41.7
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 6.4e-30 135.2 208 40.9
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.2e-28 131.0 123 49.6
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 6.0e-28 128.6 177 41.2
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 7.9e-28 128.3 224 37.1
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 5.1e-27 125.6 111 54.1
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 8.7e-27 124.8 165 41.2
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.2e-23 114.4 230 32.2
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 8.4e-22 108.2 228 28.9
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.5e-21 106.7 231 32.9
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 1.2e-20 104.4 82 63.4
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 6.7e-19 98.6 57 84.2
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 8.7e-19 98.2 152 34.2
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 1.8e-16 90.5 227 26.9
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 2.4e-16 90.1 106 46.2
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 9.0e-16 88.2 59 71.2
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 2.9e-14 83.2 230 30.4
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 4.9e-14 82.4 229 26.2
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 6.5e-14 82.0 146 34.9
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 4.2e-13 79.3 49 75.5
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.9e-12 75.1 119 39.5
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 4.3e-10 69.3 88 51.1
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 4.3e-10 69.3 143 32.2
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 6.3e-09 65.5 49 63.3
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 1.3e-06 57.8 113 31.9


User provided reference genes

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