Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 2.1e-97 359.0 179 100.0
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.3e-70 270.0 181 76.8
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 1.9e-69 266.2 184 77.2
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 4.6e-68 261.5 184 76.1
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 1.6e-65 253.1 182 75.8
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 2.4e-64 249.2 133 90.2
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 7.4e-58 227.6 149 77.2
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 4.8e-57 224.9 184 67.4
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 6.2e-57 224.6 181 65.7
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 1.4e-56 223.4 184 66.8
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 4.0e-56 221.9 179 65.4
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 9.0e-56 220.7 179 65.4
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 1.2e-55 220.3 182 64.8
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 1.5e-55 219.9 182 65.4
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 2.6e-55 219.2 181 65.7
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 2.6e-55 219.2 184 64.7
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 4.5e-55 218.4 179 65.4
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 7.6e-55 217.6 182 63.2
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 7.6e-55 217.6 182 63.2
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 1.0e-54 217.2 185 65.9
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 1.0e-54 217.2 181 65.7
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 1.0e-54 217.2 181 65.7
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 1.0e-54 217.2 186 62.9
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 1.3e-54 216.9 187 65.8
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 3.8e-54 215.3 188 64.9
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 3.8e-54 215.3 182 62.1
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 6.5e-54 214.5 182 65.4
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 6.5e-54 214.5 182 65.4
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 6.5e-54 214.5 182 63.7
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 8.4e-54 214.2 182 66.5
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 1.1e-53 213.8 182 63.7
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 1.1e-53 213.8 182 63.7
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.4e-53 213.4 183 64.5
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 1.4e-53 213.4 186 63.4
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 1.9e-53 213.0 184 62.5
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 2.5e-53 212.6 182 65.4
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 2.5e-53 212.6 184 65.8
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 3.2e-53 212.2 183 63.9
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 3.2e-53 212.2 151 71.5
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 4.2e-53 211.8 183 64.5
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 5.5e-53 211.5 182 62.1
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 7.1e-53 211.1 183 63.4
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 9.3e-53 210.7 185 64.3
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 1.6e-52 209.9 186 62.9
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 1.6e-52 209.9 182 65.4
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 2.1e-52 209.5 183 62.8
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 2.1e-52 209.5 183 62.8
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 2.7e-52 209.1 185 66.5
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 4.6e-52 208.4 182 64.8
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 4.6e-52 208.4 182 63.7
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 4.6e-52 208.4 156 66.7
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 7.9e-52 207.6 183 62.3
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 7.9e-52 207.6 184 65.2
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 1.0e-51 207.2 168 66.7
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 1.3e-51 206.8 182 62.1
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 1.3e-51 206.8 182 64.3
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 1.3e-51 206.8 182 62.6
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 1.8e-51 206.5 189 60.3
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 3.0e-51 205.7 182 62.6
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 3.9e-51 205.3 187 62.6
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 3.9e-51 205.3 181 64.6
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 5.1e-51 204.9 151 70.9
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 5.1e-51 204.9 182 61.5
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 6.7e-51 204.5 181 61.3
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 6.7e-51 204.5 181 64.1
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 6.7e-51 204.5 182 63.7
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 8.7e-51 204.1 181 63.5
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 8.7e-51 204.1 169 65.7
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 1.5e-50 203.4 182 64.8
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 1.5e-50 203.4 183 63.9
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 1.5e-50 203.4 151 70.9
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 1.9e-50 203.0 185 62.7
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 2.5e-50 202.6 129 76.7
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 3.3e-50 202.2 186 63.4
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 4.3e-50 201.8 180 62.2
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 4.3e-50 201.8 129 76.7
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 7.4e-50 201.1 130 74.6
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 7.4e-50 201.1 150 70.0
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 1.3e-49 200.3 177 62.7
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 1.3e-49 200.3 158 66.5
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 1.3e-49 200.3 177 62.7
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.3e-49 200.3 182 60.4
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 1.6e-49 199.9 129 75.2
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 2.2e-49 199.5 179 63.1
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 2.2e-49 199.5 182 61.5
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 2.2e-49 199.5 182 61.0
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 4.8e-49 198.4 129 75.2
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 4.8e-49 198.4 129 75.2
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 6.3e-49 198.0 149 67.1
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 8.2e-49 197.6 183 60.7
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 1.1e-48 197.2 182 62.6
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.4e-48 196.8 149 65.8
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 1.8e-48 196.4 174 61.5
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 1.8e-48 196.4 176 61.9
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 4.1e-48 195.3 187 58.8
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 6.9e-48 194.5 184 57.1
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 1.2e-47 193.7 180 60.0
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 1.5e-47 193.4 194 56.7
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 2.0e-47 193.0 184 59.2
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 2.6e-47 192.6 178 59.0
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 2.6e-47 192.6 178 59.0
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 2.6e-47 192.6 178 59.0
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 3.4e-47 192.2 183 60.1
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 7.7e-47 191.0 182 58.2
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 1.0e-46 190.7 121 76.0
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 1.1e-45 187.2 152 65.1
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 3.2e-45 185.7 190 57.9
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 9.4e-45 184.1 113 77.0
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 2.1e-44 183.0 180 58.3
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 7.9e-44 181.0 222 49.5
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 2.3e-43 179.5 171 57.9
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 3.3e-42 175.6 294 41.5
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 4.3e-42 175.3 151 63.6
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 5.7e-42 174.9 182 53.3
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 5.7e-42 174.9 117 75.2
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 1.7e-41 173.3 189 56.1
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 2.8e-41 172.6 294 40.8
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.1e-40 170.6 166 53.6
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 1.1e-40 170.6 152 58.6
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 5.3e-40 168.3 148 62.8
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 1.2e-39 167.2 185 55.1
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 3.6e-36 155.6 121 65.3
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 5.7e-34 148.3 131 60.3
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 9.7e-34 147.5 146 52.1
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 9.1e-32 141.0 87 79.3
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 3.5e-31 139.0 87 77.0
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 4.5e-31 138.7 87 75.9
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 1.3e-30 137.1 100 65.0
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 2.2e-30 136.3 86 76.7
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 3.8e-30 135.6 82 81.7
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 3.2e-29 132.5 82 76.8
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 2.1e-28 129.8 120 52.5
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 1.4e-27 127.1 87 71.3
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 3.9e-27 125.6 82 76.8
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 2.6e-26 122.9 145 46.2
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 1.1e-24 117.5 87 71.3
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 5.0e-14 82.0 99 52.5
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 2.5e-13 79.7 54 68.5
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 6.1e-12 75.1 54 68.5
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 8.0e-12 74.7 69 47.8
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.8e-11 73.6 106 47.2
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 2.6e-10 69.7 72 55.6
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 5.7e-10 68.6 82 51.2
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 6.3e-09 65.1 88 42.0
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 1.0e-06 57.8 50 56.0


User provided reference genes

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