Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 2371.3 1111 100.0
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 2207.2 1111 92.2
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 2204.9 1111 92.3
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 2054.6 1106 86.7
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1823.9 1110 74.2
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1769.2 1115 72.6
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1745.7 1110 71.1
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1735.3 1114 69.6
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1722.2 1128 70.0
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1711.0 1036 80.0
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1710.7 1110 69.5
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1708.0 1109 69.3
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1706.8 1109 69.0
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1703.7 1110 69.5
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1702.6 1115 68.7
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1700.6 1073 72.3
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1697.9 1109 69.1
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1696.0 1113 68.4
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1685.6 1110 68.7
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1683.7 1111 68.5
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1682.2 1112 68.2
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1682.2 1112 68.4
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1679.1 1112 68.5
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1678.3 1112 68.1
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1677.9 1112 68.2
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1677.5 1111 68.2
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1676.0 1067 71.6
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1674.1 1112 68.0
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1672.1 1097 69.3
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1664.8 1117 67.9
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1664.0 1112 67.2
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1657.9 1111 67.1
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1656.0 1120 67.0
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1655.2 1124 67.7
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1653.3 1109 67.4
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1649.8 1110 66.6
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1648.6 1109 67.2
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1645.6 1118 67.3
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1644.4 1224 62.7
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1644.0 1092 68.5
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1642.1 1112 67.2
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1636.3 1110 67.4
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1635.5 1114 66.0
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1634.4 1122 66.5
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1630.9 1114 66.4
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1630.9 1049 70.7
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1627.8 1117 66.4
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1627.1 1114 66.4
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1626.7 1123 66.3
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1625.9 1110 66.0
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1625.1 1113 66.1
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1624.8 1106 66.8
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1624.4 1110 66.5
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1623.2 1103 67.2
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1623.2 1110 65.9
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1622.4 1102 66.8
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1622.1 1110 66.3
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1620.5 1114 66.1
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1620.1 1111 66.2
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1619.8 1104 66.8
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1619.4 1114 65.5
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1618.6 1110 66.3
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1614.7 1108 66.7
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1613.6 1114 65.6
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1612.8 1108 66.5
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1612.8 1110 65.9
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1612.0 1118 65.5
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1611.3 1109 65.6
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1610.9 1110 65.9
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1610.5 1116 65.9
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1610.1 1112 66.2
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1609.3 1103 66.5
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1605.9 1097 66.4
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1598.2 1095 66.1
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1598.2 1110 66.2
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1594.7 1105 66.7
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1578.5 1109 65.2
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1564.3 1073 66.4
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1558.5 1117 64.5
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1557.0 1109 65.1
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1531.9 1137 62.2
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1529.6 990 70.0
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1525.8 1118 62.3
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1514.6 1001 69.7
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1507.7 1167 62.0
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1505.0 1113 61.5
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1479.2 1080 62.9
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1387.9 898 70.6
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1346.3 924 66.1
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1276.5 1134 53.4
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1263.1 1095 54.7
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1238.0 1112 52.7
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1206.8 831 66.9
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1195.6 749 72.1
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1193.3 832 65.6
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1129.4 1118 49.7
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1120.5 738 68.8
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1114.4 760 67.4
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 5.6e-305 1051.2 667 71.5
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 1.6e-304 1049.7 1126 48.3
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.4e-284 983.4 572 82.0
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 2.6e-270 936.0 688 63.4
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 6.3e-248 861.7 680 60.4
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 9.1e-239 831.2 498 77.1
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 8.5e-213 745.0 518 66.6
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 2.1e-211 740.3 518 66.6
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 3.0e-165 587.0 1509 30.3
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 5.3e-162 576.2 382 68.6
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 4.8e-147 526.6 270 93.0
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 1.2e-142 511.9 602 45.7
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 1.6e-131 474.9 284 74.3
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 4.1e-114 417.2 240 76.7
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 4.7e-110 403.7 584 39.6
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 4.4e-100 370.5 827 30.8
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 1.8e-85 322.0 192 72.9
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.1e-82 312.8 156 88.5
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 5.6e-79 300.4 201 66.2
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 1.8e-77 295.4 258 53.9
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 7.5e-76 290.0 174 76.4
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.2e-68 266.2 208 61.5
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.6e-60 238.4 209 53.1
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 7.1e-58 230.3 130 74.6
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 2.9e-51 208.4 164 60.4
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 6.4e-51 207.2 123 72.4
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 6.0e-41 174.1 124 63.7
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 4.2e-34 151.4 105 60.0
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 1.0e-32 146.7 195 41.5
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 1.3e-32 146.4 174 44.8
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 3.0e-32 145.2 112 55.4
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 4.3e-31 141.4 82 73.2
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 3.7e-30 138.3 85 70.6
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 8.1e-30 137.1 137 51.1
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.8e-29 136.0 75 74.7
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 6.9e-29 134.0 69 79.7
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 9.0e-29 133.7 144 46.5
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 7.6e-28 130.6 69 78.3
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 7.1e-26 124.0 144 44.4
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 2.3e-24 119.0 114 52.6
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 6.7e-24 117.5 96 57.3
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 1.8e-21 109.4 53 86.8
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 3.1e-21 108.6 66 69.7
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 3.2e-18 98.6 110 44.5
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 2.7e-17 95.5 133 42.9
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 2.5e-15 89.0 86 50.0
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 3.3e-15 88.6 84 48.8
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 4.8e-14 84.7 48 72.9
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 4.8e-14 84.7 88 48.9
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 8.2e-14 84.0 45 75.6
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 5.3e-13 81.3 57 59.6
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 5.3e-13 81.3 45 75.6
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 4.5e-12 78.2 45 71.1
CSS0027518 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D111919 4.3e-07 61.6 35 77.1
CAN.G33.10 Capsicum annuum HOM05D001402 ORTHO05D115258 4.8e-06 58.2 37 73.0


User provided reference genes

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