Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 2.3e-179 632.1 323 100.0
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 1.8e-155 552.7 314 91.4
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 2.2e-153 545.8 314 90.1
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 3.8e-153 545.0 314 90.1
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 9.0e-147 523.9 331 83.4
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 1.2e-146 523.5 327 84.7
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 1.9e-144 516.2 345 80.3
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 5.6e-141 504.6 291 86.6
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 7.4e-141 504.2 330 79.1
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 7.4e-141 504.2 289 85.1
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 9.6e-141 503.8 305 83.6
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 9.6e-141 503.8 297 84.5
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 4.8e-140 501.5 279 87.5
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 6.2e-140 501.1 337 77.7
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 1.8e-139 499.6 292 83.2
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.8e-139 499.6 290 85.9
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 2.4e-139 499.2 289 87.2
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 4.0e-139 498.4 330 78.5
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 4.0e-139 498.4 323 78.6
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 3.4e-138 495.4 307 82.4
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 4.5e-138 495.0 332 78.0
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 4.5e-138 495.0 292 83.2
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 1.3e-137 493.4 292 83.6
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 1.7e-137 493.0 326 76.1
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 2.2e-137 492.7 299 82.6
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 2.9e-137 492.3 285 86.3
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.9e-137 492.3 330 75.8
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 4.9e-137 491.5 329 76.0
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 6.5e-137 491.1 322 78.6
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 6.5e-137 491.1 308 80.8
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 8.4e-137 490.7 281 85.1
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 1.4e-136 490.0 291 82.1
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 1.4e-136 490.0 331 77.3
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 1.9e-136 489.6 289 83.4
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 1.9e-136 489.6 330 75.8
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 1.9e-136 489.6 284 84.5
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 3.2e-136 488.8 294 81.0
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 4.2e-136 488.4 293 81.6
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 5.5e-136 488.0 333 74.2
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 7.1e-136 487.6 291 82.5
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 9.3e-136 487.3 320 78.1
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 1.2e-135 486.9 290 83.4
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 1.6e-135 486.5 319 76.2
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 2.7e-135 485.7 295 81.4
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 2.7e-135 485.7 293 80.9
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 2.7e-135 485.7 329 74.2
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 3.5e-135 485.3 292 80.5
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 3.5e-135 485.3 288 83.7
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 7.9e-135 484.2 292 81.8
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.3e-134 483.4 287 82.2
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 1.3e-134 483.4 301 80.4
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 1.8e-134 483.0 284 82.7
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 2.3e-134 482.6 279 82.8
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 3.0e-134 482.3 308 76.3
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 3.0e-134 482.3 298 78.2
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 5.1e-134 481.5 271 86.0
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 1.1e-133 480.3 324 73.8
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 1.1e-133 480.3 290 81.7
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.5e-133 479.9 271 85.2
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.5e-133 479.9 288 82.3
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 3.3e-133 478.8 315 77.1
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 4.3e-133 478.4 336 72.3
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 4.3e-133 478.4 311 77.5
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 5.7e-133 478.0 315 75.6
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 5.7e-133 478.0 315 75.6
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 1.6e-132 476.5 284 83.1
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 2.1e-132 476.1 272 85.3
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 2.1e-132 476.1 282 83.3
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 2.1e-132 476.1 295 80.7
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 2.8e-132 475.7 284 83.1
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 3.7e-132 475.3 329 74.8
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 6.3e-132 474.6 285 81.8
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 2.4e-131 472.6 311 77.2
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 3.1e-131 472.2 301 78.7
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 4.1e-131 471.9 301 78.7
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 5.3e-131 471.5 301 78.7
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 9.0e-131 470.7 301 78.4
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 9.0e-131 470.7 290 82.1
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 1.2e-130 470.3 297 80.1
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 1.5e-130 469.9 278 82.4
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 2.0e-130 469.5 284 82.0
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 7.6e-130 467.6 276 83.7
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 2.5e-128 462.6 274 81.0
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 2.7e-127 459.1 303 74.6
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.5e-125 452.6 259 86.9
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 2.5e-125 452.6 284 80.3
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 8.2e-124 447.6 309 72.8
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 8.2e-124 447.6 274 79.2
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 1.4e-123 446.8 316 73.7
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 9.1e-123 444.1 273 79.1
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 7.2e-120 434.5 290 73.4
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 9.4e-120 434.1 290 75.2
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 1.2e-119 433.7 384 61.2
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.2e-113 412.9 270 79.6
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 4.4e-109 398.7 291 71.8
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 8.2e-108 394.4 211 91.9
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.8e-107 393.3 250 76.0
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 2.9e-105 386.0 235 81.7
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.6e-103 380.2 235 78.7
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 8.0e-103 377.9 233 80.3
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.2e-101 374.0 244 79.9
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 2.0e-98 363.2 269 65.1
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 6.5e-97 358.2 258 66.3
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 7.5e-93 344.7 243 73.3
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 7.5e-93 344.7 214 82.2
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 8.3e-92 341.3 202 79.2
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.6e-90 337.0 251 70.5
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 7.7e-90 334.7 250 71.2
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 1.0e-86 324.3 196 81.1
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.0e-82 310.1 307 57.7
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 1.9e-80 303.5 263 55.1
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 7.5e-77 291.6 157 89.2
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 1.8e-70 270.4 202 67.8
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 1.4e-62 244.2 211 60.2
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.7e-60 237.3 159 77.4
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 1.2e-50 204.5 116 87.9
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 2.1e-50 203.8 120 80.0
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 4.6e-50 202.6 289 42.9
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 1.0e-49 201.4 121 79.3
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 1.2e-47 194.5 116 81.0
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 2.8e-47 193.4 275 42.9
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 5.2e-46 189.1 128 72.7
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 1.7e-44 184.1 223 48.9
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 3.9e-33 146.4 284 37.0
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 1.9e-32 144.1 229 41.0
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.9e-32 144.1 82 82.9
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 2.0e-29 134.0 76 84.2
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 3.8e-28 129.8 274 33.2
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 7.1e-27 125.6 63 90.5
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 2.7e-26 123.6 77 75.3
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 2.5e-24 117.1 338 29.0
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 1.2e-21 108.2 71 74.6
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 8.4e-20 102.1 102 52.0
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 3.0e-17 93.6 78 65.4
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 1.1e-16 91.7 77 64.9
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 1.0e-12 78.6 45 84.4
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 1.0e-09 68.6 129 39.5
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 5.7e-08 62.8 53 64.2
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 1.7e-07 61.2 59 55.9
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 3.1e-06 57.0 46 63.0
FvH4_6g53451 Fragaria vesca HOM05D005629 ORTHO05D196308 5.3e-06 56.2 74 44.6


User provided reference genes

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