Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 5.0e-78 294.7 182 100.0
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 1.0e-54 217.2 157 91.7
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 6.0e-47 191.4 145 85.5
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 8.6e-46 187.6 145 84.8
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 4.3e-45 185.3 145 83.4
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 9.5e-45 184.1 145 83.4
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 4.0e-43 178.7 145 82.1
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 2.6e-42 176.0 142 81.0
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 4.1e-40 168.7 145 77.2
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 7.1e-40 167.9 145 77.2
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 6.2e-36 154.8 141 51.1
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 7.6e-34 147.9 139 69.1
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 2.4e-32 142.9 137 70.8
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 3.2e-32 142.5 138 71.0
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 3.2e-32 142.5 138 71.0
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 4.1e-32 142.1 137 72.3
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 1.2e-31 140.6 137 70.1
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.2e-31 140.6 141 66.7
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 1.2e-31 140.6 130 71.5
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 1.6e-31 140.2 137 66.4
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 2.1e-31 139.8 140 70.0
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 2.1e-31 139.8 139 66.9
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 3.5e-31 139.0 138 68.1
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 4.6e-31 138.7 141 69.5
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 4.6e-31 138.7 130 73.8
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 6.0e-31 138.3 137 65.7
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 7.8e-31 137.9 139 66.2
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 1.3e-30 137.1 137 68.6
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 1.7e-30 136.7 141 66.7
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 1.7e-30 136.7 128 68.8
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 1.7e-30 136.7 138 58.7
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 3.9e-30 135.6 88 68.2
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 3.9e-30 135.6 147 66.0
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 1.5e-29 133.7 138 65.9
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 2.5e-29 132.9 140 65.7
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 3.3e-29 132.5 137 67.9
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 3.3e-29 132.5 131 61.1
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 7.3e-29 131.3 136 62.5
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 1.6e-28 130.2 129 69.0
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 2.1e-28 129.8 129 67.4
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 2.1e-28 129.8 140 65.0
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 2.8e-28 129.4 136 66.9
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 2.8e-28 129.4 130 66.9
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 2.8e-28 129.4 130 66.9
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 4.7e-28 128.6 136 66.2
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 6.2e-28 128.3 138 65.2
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 1.8e-27 126.7 136 66.9
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 2.4e-27 126.3 130 66.2
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 3.1e-27 125.9 130 66.9
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 4.0e-27 125.6 140 62.1
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 6.9e-27 124.8 130 64.6
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 1.2e-26 124.0 129 68.2
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 1.2e-26 124.0 134 63.4
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 2.0e-26 123.2 136 65.4
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 2.6e-26 122.9 130 63.8
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 3.4e-26 122.5 130 50.0
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 3.4e-26 122.5 142 50.0
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 5.8e-26 121.7 130 67.7
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 9.9e-26 120.9 134 52.2
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.3e-25 120.6 136 64.0
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 1.3e-25 120.6 141 61.0
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 2.2e-25 119.8 148 58.8
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 2.9e-25 119.4 127 68.5
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 4.9e-25 118.6 142 60.6
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 4.9e-25 118.6 139 63.3
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 1.1e-24 117.5 119 68.1
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.4e-24 117.1 135 65.2
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 2.4e-24 116.3 130 66.9
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 5.4e-24 115.2 83 60.2
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 7.1e-24 114.8 121 69.4
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 9.3e-24 114.4 137 59.9
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 1.2e-23 114.0 130 61.5
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 2.7e-23 112.8 125 44.0
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 2.7e-23 112.8 130 60.8
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 4.6e-23 112.1 140 58.6
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 6.0e-23 111.7 127 62.2
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 6.0e-23 111.7 127 62.2
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 7.8e-23 111.3 131 60.3
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 7.8e-23 111.3 132 59.8
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 1.3e-22 110.5 129 58.9
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 1.3e-22 110.5 127 62.2
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 1.7e-22 110.2 128 67.2
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 2.3e-22 109.8 127 60.6
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 3.9e-22 109.0 140 55.0
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 5.1e-22 108.6 120 68.3
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 6.6e-22 108.2 127 62.2
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 8.7e-22 107.8 84 51.2
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 2.5e-21 106.3 130 58.5
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 4.3e-21 105.5 80 51.2
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 2.1e-20 103.2 113 69.0
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 2.1e-20 103.2 131 57.3
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 2.1e-20 103.2 131 57.3
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 2.8e-20 102.8 129 57.4
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 2.8e-20 102.8 131 56.5
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 3.6e-20 102.4 131 56.5
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 6.2e-20 101.7 129 52.7
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 1.1e-19 100.9 136 62.5
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 1.1e-19 100.9 102 77.5
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 1.8e-19 100.1 82 47.6
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 3.1e-19 99.4 118 56.8
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 4.0e-19 99.0 135 37.8
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 4.0e-19 99.0 131 55.0
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 6.9e-19 98.2 137 55.5
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 9.0e-19 97.8 120 55.8
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 3.4e-18 95.9 118 42.4
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 5.8e-18 95.1 141 36.9
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 2.9e-17 92.8 131 51.9
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 9.3e-16 87.8 128 52.3
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 3.5e-15 85.9 131 51.9
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 3.5e-15 85.9 131 51.9
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 4.6e-15 85.5 119 57.1
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 1.5e-13 80.5 116 50.9
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 1.9e-13 80.1 125 50.4
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 2.5e-13 79.7 132 40.2
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 3.3e-13 79.3 96 59.4
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 2.4e-11 73.2 63 49.2
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 9.0e-11 71.2 146 30.8
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 5.8e-10 68.6 118 31.4
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 5.8e-10 68.6 118 31.4
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 5.8e-10 68.6 118 31.4
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 7.6e-10 68.2 122 29.5
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 2.9e-09 66.2 118 29.7
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 2.9e-09 66.2 118 29.7
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 3.8e-09 65.9 131 44.3
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 3.2e-08 62.8 118 29.7
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 5.5e-08 62.0 58 46.6
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.2e-07 60.8 87 52.9
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 2.1e-07 60.1 102 30.4


User provided reference genes

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