Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1703.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-240 836.3 465 100.0
CAN.G1703.18 Capsicum annuum HOM05D002496 ORTHO05D002787 5.7e-211 737.6 443 93.9
Sopen12g035030 Solanum pennellii HOM05D002496 ORTHO05D002787 7.4e-211 737.3 446 93.0
Solyc12g100360.1 Solanum lycopersicum HOM05D002496 ORTHO05D002787 1.7e-210 736.1 446 92.6
CAN.G1579.7 Capsicum annuum HOM05D002496 ORTHO05D002787 2.1e-205 719.2 442 93.0
Peaxi162Scf00738g00312 Petunia axillaris HOM05D002496 ORTHO05D002787 5.9e-200 701.0 446 89.2
CAN.G1751.12 Capsicum annuum HOM05D002496 ORTHO05D002787 3.0e-196 688.7 454 87.9
Nitab4.5_0000827g0130 Nicotiana tabacum HOM05D002496 ORTHO05D002787 7.2e-190 667.5 446 86.3
CAN.G575.132 Capsicum annuum HOM05D002496 ORTHO05D002787 1.4e-185 653.3 404 89.4
Dinv13473 Davidia involucrata HOM05D002496 ORTHO05D002787 2.7e-176 622.5 443 77.4
Oeu023952.2 Olea europaea HOM05D002496 ORTHO05D002787 1.2e-173 613.6 447 76.3
Oeu023700.1 Olea europaea HOM05D002496 ORTHO05D002787 8.1e-173 610.9 447 75.4
CAN.G2026.1 Capsicum annuum HOM05D002496 ORTHO05D002787 1.4e-172 610.1 377 92.6
CSS0046180 Camellia sinensis var. sinensis HOM05D002496 ORTHO05D002787 2.3e-172 609.4 443 77.0
Actinidia39346 Actinidia chinensis HOM05D002496 ORTHO05D002787 2.2e-170 602.8 443 76.3
Cc01_g00070 Coffea canephora HOM05D002496 ORTHO05D002787 1.1e-169 600.5 442 74.7
Manes.03G087600 Manihot esculenta HOM05D002496 ORTHO05D002787 5.4e-169 598.2 456 74.8
CiPaw.13G177100 Carya illinoinensis HOM05D002496 ORTHO05D002787 2.1e-168 596.3 460 72.6
MD11G1003500 Malus domestica HOM05D002496 ORTHO05D002787 1.7e-167 593.2 462 73.8
Cfa009562 Carpinus fangiana HOM05D002496 ORTHO05D002787 3.9e-167 592.0 463 73.7
Ciclev10014012m.g Citrus clementina HOM05D002496 ORTHO05D002787 2.5e-166 589.3 463 73.9
Prupe.6G003300 Prunus persica HOM05D002496 ORTHO05D002787 1.2e-165 587.0 462 72.1
Migut.D02589 Erythranthe guttata HOM05D002496 ORTHO05D002787 2.1e-165 586.3 444 75.9
MD03G1003600 Malus domestica HOM05D002496 ORTHO05D002787 2.1e-165 586.3 458 72.7
QL01p003675 Quercus lobata HOM05D002496 ORTHO05D002787 2.8e-165 585.9 452 74.3
Migut.D02566 Erythranthe guttata HOM05D002496 ORTHO05D002787 4.7e-165 585.1 444 75.7
Lj2A763T47 Lonicera japonica HOM05D002496 ORTHO05D002787 8.1e-165 584.3 447 74.5
TAR369G0007 Trochodendron aralioides HOM05D002496 ORTHO05D002787 8.1e-165 584.3 458 73.1
Rhsim01G0184300 Rhododendron simsii HOM05D002496 ORTHO05D002787 1.4e-164 583.6 443 74.5
GSVIVG01025470001 Vitis vinifera HOM05D002496 ORTHO05D002787 1.4e-164 583.6 462 72.9
SalBow2G0058 Salvia bowleyana HOM05D002496 ORTHO05D002787 1.8e-164 583.2 442 74.2
TAR623G0218 Trochodendron aralioides HOM05D002496 ORTHO05D002787 4.0e-164 582.0 459 72.5
MSTRG.20937 Avicennia marina HOM05D002496 ORTHO05D002787 5.2e-164 581.6 447 73.8
DCAR_029934 Daucus carota HOM05D002496 ORTHO05D002787 1.2e-163 580.5 443 75.6
Nn7g35861 Nelumbo nucifera HOM05D002496 ORTHO05D002787 1.5e-163 580.1 468 72.2
FAN25G0679 Fragaria x ananassa HOM05D002496 ORTHO05D002787 3.4e-163 578.9 457 72.9
FAN16G0954 Fragaria x ananassa HOM05D002496 ORTHO05D002787 5.8e-163 578.2 459 72.5
vmacro12599 Vaccinium macrocarpon HOM05D002496 ORTHO05D002787 9.9e-163 577.4 443 73.8
FvH4_3g45741 Fragaria vesca HOM05D002496 ORTHO05D002787 3.7e-162 575.5 462 71.6
CsaV3_1G041650 Cucumis sativus L. HOM05D002496 ORTHO05D002787 2.4e-161 572.8 464 72.0
MELO3C015577.2 Cucumis melo HOM05D002496 ORTHO05D002787 3.2e-161 572.4 464 72.2
CAN.G2119.3 Capsicum annuum HOM05D002496 ORTHO05D002787 4.1e-161 572.0 360 91.4
Thecc.09G199700 Theobroma cacao HOM05D002496 ORTHO05D002787 5.4e-161 571.6 458 72.5
Potri.003G221100 Populus trichocarpa HOM05D002496 ORTHO05D002787 7.1e-161 571.2 469 72.5
ClCG03G014540 Citrullus lanatus HOM05D002496 ORTHO05D002787 1.2e-160 570.5 469 71.9
Thhalv10011175m.g Eutrema salsugineum HOM05D002496 ORTHO05D002787 3.9e-159 565.5 456 70.8
Gohir.A03G022300 Gossypium hirsutum HOM05D002496 ORTHO05D002787 5.1e-159 565.1 453 72.0
Gohir.D03G146400 Gossypium hirsutum HOM05D002496 ORTHO05D002787 5.1e-159 565.1 453 72.2
HanXRQChr13g0405751 Helianthus annuus HOM05D002496 ORTHO05D002787 6.6e-159 564.7 442 73.3
Duzib168G0200 Durio zibethinus HOM05D002496 ORTHO05D002787 8.6e-159 564.3 458 71.6
Sp1g41030 Schrenkiella parvula HOM05D002496 ORTHO05D002787 8.6e-159 564.3 456 70.6
Gorai.003G153800 Gossypium raimondii HOM05D002496 ORTHO05D002787 1.9e-158 563.1 453 71.7
Potri.001G003900 Populus trichocarpa HOM05D002496 ORTHO05D002787 1.9e-158 563.1 462 69.3
Carub.0001s4386 Capsella rubella HOM05D002496 ORTHO05D002787 9.6e-158 560.8 456 70.0
Glyma.08G125500 Glycine max HOM05D002496 ORTHO05D002787 9.6e-158 560.8 460 71.3
Sabra03G0164600 Salix brachista HOM05D002496 ORTHO05D002787 9.6e-158 560.8 462 72.3
AL1G63400 Arabidopsis lyrata HOM05D002496 ORTHO05D002787 1.6e-157 560.1 456 70.2
Sed0022657 Sechium edule HOM05D002496 ORTHO05D002787 3.6e-157 558.9 459 71.5
Aa31LG10G1150 Aethionema arabicum HOM05D002496 ORTHO05D002787 6.2e-157 558.1 456 70.2
CARHR045010 Cardamine hirsuta HOM05D002496 ORTHO05D002787 6.2e-157 558.1 456 69.7
PGR119G1355 Punica granatum HOM05D002496 ORTHO05D002787 6.2e-157 558.1 458 71.4
AT1G55350 Arabidopsis thaliana HOM05D002496 ORTHO05D002787 1.4e-156 557.0 456 70.2
HanXRQChr02g0057261 Helianthus annuus HOM05D002496 ORTHO05D002787 1.8e-156 556.6 440 73.0
RcHm_v2.0_Chr5g0083811 Rosa chinensis HOM05D002496 ORTHO05D002787 1.8e-156 556.6 462 71.0
Sabra01G0002600 Salix brachista HOM05D002496 ORTHO05D002787 8.9e-156 554.3 462 70.1
A06p00230 Brassica napus HOM05D002496 ORTHO05D002787 1.2e-155 553.9 456 68.6
BolC6t36109H Brassica oleracea HOM05D002496 ORTHO05D002787 1.2e-155 553.9 456 68.0
BraA06t23239Z Brassica rapa HOM05D002496 ORTHO05D002787 1.2e-155 553.9 456 68.6
CANSAT11G2110 Cannabis sativa HOM05D002496 ORTHO05D002787 2.0e-155 553.1 459 70.6
BcaB04g16962 Brassica carinata HOM05D002496 ORTHO05D002787 7.6e-155 551.2 454 69.4
CAN.G575.112 Capsicum annuum HOM05D002496 ORTHO05D002787 9.9e-155 550.8 413 80.1
Cpa.g.sc119.40 Carica papaya HOM05D002496 ORTHO05D002787 9.9e-155 550.8 454 69.6
ECA233G0145 Erigeron canadensis HOM05D002496 ORTHO05D002787 2.2e-154 549.7 441 72.3
C06p10330 Brassica napus HOM05D002496 ORTHO05D002787 1.9e-153 546.6 456 66.2
Ca_17842_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 2.4e-153 546.2 459 71.5
Eucgr.J01766 Eucalyptus grandis HOM05D002496 ORTHO05D002787 3.2e-153 545.8 458 65.7
Phvul.002G247600 Phaseolus vulgaris HOM05D002496 ORTHO05D002787 4.2e-153 545.4 460 69.8
THA.LOC104810325 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 9.3e-153 544.3 453 69.1
TPR.G6803 Trifolium pratense HOM05D002496 ORTHO05D002787 9.3e-153 544.3 462 69.9
Sed0000966 Sechium edule HOM05D002496 ORTHO05D002787 1.6e-152 543.5 461 70.5
THA.LOC104822681 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 2.7e-152 542.7 455 68.4
VMungo0251G3571 Vigna mungo HOM05D002496 ORTHO05D002787 3.5e-152 542.3 461 69.6
Sc16g0012220 Simmondsia chinensis HOM05D002496 ORTHO05D002787 4.6e-152 542.0 463 68.7
Medtr8g088520 Medicago truncatula HOM05D002496 ORTHO05D002787 7.8e-152 541.2 469 68.7
Psat7g064160 Pisum sativum HOM05D002496 ORTHO05D002787 7.8e-152 541.2 462 69.7
Aqoxy1G00475 Aquilegia oxysepala HOM05D002496 ORTHO05D002787 2.8e-149 532.7 459 67.8
PSO384G1583 Papaver somniferum HOM05D002496 ORTHO05D002787 1.8e-148 530.0 464 68.1
Actinidia30436 Actinidia chinensis HOM05D002496 ORTHO05D002787 3.1e-148 529.3 447 67.6
CAN.G1833.6 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-147 527.3 327 93.0
Haze_22941 Corylus avellana HOM05D002496 ORTHO05D002787 2.0e-147 526.6 470 67.9
Lalb_Chr13g0295581 Lupinus albus HOM05D002496 ORTHO05D002787 2.0e-147 526.6 453 69.5
PSO339G0705 Papaver somniferum HOM05D002496 ORTHO05D002787 7.6e-147 524.6 464 67.9
MBI01_g25638_MAGBIO Magnolia biondii HOM05D002496 ORTHO05D002787 6.4e-146 521.5 458 67.2
Lsat_1_v5_gn_6_53141 Lactuca sativa HOM05D002496 ORTHO05D002787 5.4e-145 518.5 450 68.4
ATR0827G153 Amborella trichopoda HOM05D002496 ORTHO05D002787 3.5e-144 515.8 441 69.6
SGA_v2.0_scaffold3G01729 Striga asiatica HOM05D002496 ORTHO05D002787 5.6e-142 508.4 399 71.9
Glyma.05G167200 Glycine max HOM05D002496 ORTHO05D002787 5.3e-140 501.9 460 61.5
BcaC08g43619 Brassica carinata HOM05D002496 ORTHO05D002787 6.9e-140 501.5 457 60.8
arahy.Tifrunner.gnm1.ann1.3G7H7K Arachis hypogaea HOM05D002496 ORTHO05D002787 1.9e-137 493.4 460 64.3
CAN.G1353.19 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-136 490.7 409 74.8
AUR62040902 Chenopodium quinoa HOM05D002496 ORTHO05D002787 8.7e-135 484.6 440 65.7
CAN.G309.134 Capsicum annuum HOM05D002496 ORTHO05D002787 3.3e-134 482.6 294 89.1
HPP92_024699 Vanilla planifolia HOM05D002496 ORTHO05D002787 3.7e-133 479.2 470 59.8
arahy.Tifrunner.gnm1.ann1.P751E4 Arachis hypogaea HOM05D002496 ORTHO05D002787 1.4e-129 467.2 460 62.2
CAN.G134.139 Capsicum annuum HOM05D002496 ORTHO05D002787 5.5e-129 465.3 410 70.7
Lj4g0028195 Lotus japonicus HOM05D002496 ORTHO05D002787 9.3e-129 464.5 460 62.6
Atru.chr3.2106 Acer truncatum HOM05D002496 ORTHO05D002787 6.7e-127 458.4 468 62.8
Dinv11478 Davidia involucrata HOM05D002496 ORTHO05D002787 1.1e-126 457.6 324 81.5
EL10Ac4g10386 Beta vulgaris HOM05D002496 ORTHO05D002787 3.3e-126 456.1 425 63.8
Os02g0709400 Oryza sativa ssp. japonica HOM05D002496 ORTHO05D002787 9.6e-126 454.5 462 59.5
CiPaw.14G137000 Carya illinoinensis HOM05D002496 ORTHO05D002787 1.1e-118 431.0 375 69.6
CAN.G309.99 Capsicum annuum HOM05D002496 ORTHO05D002787 2.5e-118 429.9 296 80.7
CDE02G0627 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 2.8e-117 426.4 434 60.6
CAN.G1579.14 Capsicum annuum HOM05D002496 ORTHO05D002787 2.4e-116 423.3 268 92.9
CAN.G309.130 Capsicum annuum HOM05D002496 ORTHO05D002787 1.4e-113 414.1 268 82.1
CAN.G309.146 Capsicum annuum HOM05D002496 ORTHO05D002787 7.2e-113 411.8 277 88.8
CAN.G1783.2 Capsicum annuum HOM05D002496 ORTHO05D002787 9.4e-113 411.4 284 82.0
CAN.G309.113 Capsicum annuum HOM05D002496 ORTHO05D002787 3.6e-112 409.5 277 87.4
Hund21627 Selenicereus undatus HOM05D002496 ORTHO05D002787 1.5e-110 404.1 418 61.5
Zm00001eb014030 Zea mays HOM05D002496 ORTHO05D002787 1.5e-110 404.1 470 54.3
CAN.G4338.1 Capsicum annuum HOM05D002496 ORTHO05D002787 2.2e-109 400.2 239 90.8
CAN.G2119.2 Capsicum annuum HOM05D002496 ORTHO05D002787 6.5e-106 388.7 306 77.8
AUR62019163 Chenopodium quinoa HOM05D002496 ORTHO05D002787 7.9e-104 381.7 458 56.8
CAN.G134.148 Capsicum annuum HOM05D002048 ORTHO05D002146 5.9e-99 365.5 243 89.7
CAN.G134.157 Capsicum annuum HOM05D002496 ORTHO05D002787 2.5e-97 360.1 341 69.5
CAN.G2177.2 Capsicum annuum HOM05D002496 ORTHO05D002787 3.2e-97 359.8 303 69.6
unitig_899.g15353 Utricularia gibba HOM05D002496 ORTHO05D002787 2.3e-95 353.6 443 54.0
SEGI_17528 Sequoiadendron giganteum HOM05D002496 ORTHO05D002787 6.7e-95 352.1 413 56.4
SMO334G0130 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 1.7e-93 347.4 463 52.3
TWI34G0193 Tripterygium wilfordii HOM05D002496 ORTHO05D002787 4.8e-93 345.9 275 70.9
CAN.G1669.8 Capsicum annuum HOM05D002496 ORTHO05D002787 6.3e-93 345.5 231 80.5
CAN.G2802.1 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-90 337.8 208 88.9
CAN.G309.123 Capsicum annuum HOM05D002496 ORTHO05D002787 8.5e-90 335.1 215 82.8
CAN.G309.135 Capsicum annuum HOM05D002496 ORTHO05D002787 2.6e-86 323.6 237 74.7
Mapoly0026s0110 Marchantia polymorpha HOM05D002496 ORTHO05D002787 7.5e-86 322.0 478 49.0
Pp3c17_17550 Physcomitrium patens HOM05D002496 ORTHO05D002787 2.4e-84 317.0 455 48.4
AagrBONN_evm.TU.Sc2ySwM_344.939 Anthoceros agrestis HOM05D002496 ORTHO05D002787 2.0e-83 313.9 475 42.5
SMO332G0020 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 1.1e-81 308.1 451 50.1
Mapoly0026s0090 Marchantia polymorpha HOM05D002496 ORTHO05D002787 1.2e-80 304.7 485 47.6
CAN.G309.103 Capsicum annuum HOM05D002496 ORTHO05D002787 8.8e-79 298.5 176 90.3
COL.COLO4_05794 Corchorus olitorius HOM05D002496 ORTHO05D002787 7.5e-78 295.4 218 72.9
C03p92660 Brassica napus HOM05D002496 ORTHO05D002787 1.3e-74 284.6 299 57.2
CAN.G309.110 Capsicum annuum HOM05D002496 ORTHO05D002787 3.3e-73 280.0 259 66.4
CAN.G134.142 Capsicum annuum HOM05D002496 ORTHO05D002787 9.5e-73 278.5 236 69.1
CAN.G309.125 Capsicum annuum HOM05D002496 ORTHO05D002787 9.5e-73 278.5 194 80.9
CAN.G134.151 Capsicum annuum HOM05D002496 ORTHO05D002787 8.9e-71 271.9 176 84.1
CAN.G1563.1 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-70 271.6 170 85.9
SHI31315 Sapria himalayana HOM05D002496 ORTHO05D002787 7.8e-67 258.8 354 52.0
CAN.G1353.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.7e-66 257.7 296 55.1
CAN.G1579.2 Capsicum annuum HOM05D002518 ORTHO05D002630 5.6e-65 252.7 156 87.8
CAN.G309.107 Capsicum annuum HOM05D002496 ORTHO05D002787 1.6e-64 251.1 219 67.6
CAN.G309.100 Capsicum annuum HOM05D002496 ORTHO05D002787 5.8e-62 242.7 295 53.6
CAN.G1353.22 Capsicum annuum HOM05D002496 ORTHO05D002787 7.5e-62 242.3 152 84.2
CAN.G309.121 Capsicum annuum HOM05D002496 ORTHO05D002787 1.0e-58 231.9 296 49.3
CAN.G2314.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.9e-57 227.6 124 92.7
CAN.G1669.7 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-56 224.9 124 91.9
CAN.G1579.1 Capsicum annuum HOM05D002496 ORTHO05D002787 1.5e-54 218.0 124 90.3
CAN.G309.132 Capsicum annuum HOM05D002496 ORTHO05D002787 1.5e-54 218.0 135 85.9
CAN.G8.32 Capsicum annuum HOM05D002496 ORTHO05D002787 5.4e-52 209.5 155 78.1
CAN.G1579.4 Capsicum annuum HOM05D002496 ORTHO05D002787 2.7e-51 207.2 124 87.9
CAN.G1353.10 Capsicum annuum HOM05D002496 ORTHO05D002787 4.6e-51 206.5 187 66.3
CAN.G134.146 Capsicum annuum HOM05D002518 ORTHO05D002630 6.6e-50 202.6 166 71.1
CAN.G309.124 Capsicum annuum HOM05D002496 ORTHO05D002787 2.3e-47 194.1 139 85.6
arahy.Tifrunner.gnm1.ann1.WZQ8WP Arachis hypogaea HOM05D002496 ORTHO05D002787 4.0e-47 193.4 269 49.4
CAN.G1353.27 Capsicum annuum HOM05D002496 ORTHO05D002787 2.0e-46 191.0 168 67.9
CAN.G309.109 Capsicum annuum HOM05D002048 ORTHO05D002146 2.6e-46 190.7 139 86.3
CAN.G309.126 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-45 188.3 124 89.5
Psat0s11647g0040 Pisum sativum HOM05D002496 ORTHO05D002787 1.7e-45 188.0 106 87.7
CAN.G309.143 Capsicum annuum HOM05D002496 ORTHO05D002630 3.3e-41 173.7 209 54.1
CAN.G309.148 Capsicum annuum HOM05D002496 ORTHO05D002787 4.3e-41 173.3 133 75.2
CAN.G1353.23 Capsicum annuum HOM05D002496 ORTHO05D002787 2.9e-37 160.6 93 86.0
CAN.G743.3 Capsicum annuum HOM05D002496 ORTHO05D002787 7.1e-36 156.0 282 47.2
CAN.G309.144 Capsicum annuum HOM05D002496 ORTHO05D002146 9.6e-33 145.6 172 59.9
CAN.G2101.1 Capsicum annuum HOM05D002496 ORTHO05D002787 3.4e-30 137.1 85 88.2
CAN.G134.141 Capsicum annuum HOM05D002518 ORTHO05D002630 1.2e-27 128.6 94 88.3
CAN.G225.19 Capsicum annuum HOM05D002496 ORTHO05D002787 3.5e-27 127.1 105 78.1
CAN.G309.114 Capsicum annuum HOM05D002496 ORTHO05D002787 5.1e-26 123.2 77 84.4
Lsat_1_v5_gn_2_54100 Lactuca sativa HOM05D002496 ORTHO05D003550 1.4e-23 115.2 98 68.4
PSO478G3224 Papaver somniferum HOM05D002496 ORTHO05D002787 3.5e-19 100.5 121 49.6
CBR_g23691 Chara braunii HOM05D001190 ORTHO05D001764 6.0e-19 99.8 437 27.2
Psat3g144720 Pisum sativum HOM05D002496 ORTHO05D002787 1.0e-18 99.0 131 51.9
CAN.G309.128 Capsicum annuum HOM05D002496 ORTHO05D002146 8.7e-18 95.9 65 70.8
CAN.G1353.21 Capsicum annuum HOM05D002048 ORTHO05D002146 1.5e-17 95.1 65 70.8
CAN.G1353.9 Capsicum annuum HOM05D002048 ORTHO05D002146 6.9e-15 86.3 46 87.0
CAN.G309.141 Capsicum annuum HOM05D002518 ORTHO05D002630 1.9e-12 78.2 45 88.9
CAN.G309.101 Capsicum annuum HOM05D002496 ORTHO05D002146 3.5e-11 73.9 44 84.1
CAN.G2026.4 Capsicum annuum HOM05D002496 ORTHO05D002787 1.8e-07 61.6 39 84.6
SHI31316 Sapria himalayana HOM05D002496 ORTHO05D002787 2.6e-06 57.8 40 77.5


User provided reference genes

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