Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 3.6e-178 628.2 345 100.0
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 6.4e-167 590.9 345 93.9
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.1e-162 575.9 345 92.2
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 1.8e-161 572.8 345 90.4
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 8.9e-161 570.5 345 91.0
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 7.4e-147 524.2 345 83.5
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.6e-144 515.8 345 82.6
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 1.3e-143 513.5 345 82.3
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 3.5e-141 505.4 345 78.6
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 4.6e-141 505.0 345 79.4
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 1.8e-140 503.1 345 78.0
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 2.3e-140 502.7 345 78.8
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 3.9e-140 501.9 345 77.7
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 3.9e-140 501.9 345 78.0
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 6.7e-140 501.1 344 78.5
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 3.3e-139 498.8 345 77.4
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 5.6e-139 498.0 345 78.8
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 1.3e-138 496.9 346 79.5
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.1e-138 496.1 345 77.7
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.7e-138 495.4 315 86.3
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 4.0e-137 491.9 345 75.7
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.5e-136 490.0 345 76.2
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 4.5e-136 488.4 345 78.8
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 7.6e-136 487.6 345 75.9
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 2.9e-135 485.7 335 77.6
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 3.8e-135 485.3 345 76.2
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 6.5e-135 484.6 345 74.8
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 1.4e-134 483.4 345 75.7
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 7.1e-134 481.1 345 76.5
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.2e-133 480.3 347 76.7
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.6e-133 479.9 345 76.5
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 2.7e-133 479.2 345 75.1
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 2.7e-133 479.2 345 73.3
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 3.5e-133 478.8 335 76.7
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 2.3e-132 476.1 341 74.8
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 3.9e-132 475.3 337 74.8
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 6.7e-132 474.6 335 75.8
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 6.7e-132 474.6 345 75.4
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.9e-131 473.0 345 73.3
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.9e-131 473.0 345 75.1
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.3e-131 472.2 345 75.1
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 7.4e-131 471.1 345 74.8
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 7.4e-131 471.1 374 71.4
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 9.6e-131 470.7 287 89.2
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.3e-130 470.3 345 74.8
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 2.8e-130 469.2 345 74.2
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 6.3e-130 468.0 345 73.0
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.5e-128 463.4 319 79.3
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 5.9e-128 461.5 345 73.6
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 7.6e-128 461.1 345 71.9
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.0e-127 460.7 345 71.6
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.4e-126 456.8 341 75.7
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 1.4e-126 456.8 342 71.3
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 1.6e-125 453.4 345 70.4
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 1.8e-124 449.9 345 71.0
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 5.1e-124 448.4 345 73.0
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.5e-123 446.8 345 72.8
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 3.3e-123 445.7 340 70.3
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 9.7e-123 444.1 343 69.1
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 1.3e-122 443.7 345 69.9
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.6e-122 443.4 340 69.7
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 3.7e-122 442.2 340 70.0
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 1.4e-121 440.3 345 69.3
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 1.8e-121 439.9 345 68.1
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 4.1e-121 438.7 343 68.8
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 6.9e-121 438.0 261 91.2
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 3.8e-119 432.2 319 74.3
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 1.6e-117 426.8 335 69.6
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 7.9e-117 424.5 345 69.9
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 1.0e-116 424.1 345 68.7
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 2.3e-116 422.9 394 63.2
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 5.1e-116 421.8 345 69.3
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 2.0e-115 419.9 345 69.3
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.7e-114 416.8 289 77.2
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 2.2e-114 416.4 345 66.1
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.1e-113 414.1 345 68.7
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 1.4e-113 413.7 346 67.6
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 3.1e-113 412.5 328 69.5
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 5.5e-110 401.7 345 65.5
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 2.7e-109 399.4 345 67.2
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.0e-108 396.0 345 67.0
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 3.0e-108 396.0 345 65.2
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 8.8e-108 394.4 345 64.3
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 2.6e-107 392.9 345 66.1
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 7.4e-107 391.3 346 65.3
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 1.3e-106 390.6 289 71.3
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 1.3e-106 390.6 337 64.7
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.7e-106 390.2 340 63.5
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 5.3e-105 385.2 347 62.0
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 9.1e-105 384.4 345 63.5
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 9.1e-105 384.4 345 63.5
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 3.5e-104 382.5 345 62.0
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 5.0e-103 378.6 373 60.3
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 5.5e-102 375.2 345 61.2
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 7.2e-102 374.8 319 67.4
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 7.2e-102 374.8 345 60.9
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 8.0e-101 371.3 348 60.3
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.0e-100 369.0 338 61.5
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 5.2e-100 368.6 345 62.9
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 6.7e-100 368.2 335 60.3
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 4.4e-99 365.5 345 60.0
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.7e-98 363.6 350 59.7
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 2.2e-98 363.2 366 58.7
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 2.2e-98 363.2 345 59.7
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 3.7e-98 362.5 345 59.7
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 5.3e-97 358.6 343 60.6
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 9.1e-97 357.8 345 62.0
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.6e-96 357.1 349 58.5
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 2.7e-96 356.3 348 58.9
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 2.7e-96 356.3 345 59.1
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 2.2e-95 353.2 333 59.8
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.0e-92 342.8 347 59.4
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 5.7e-91 338.6 340 57.9
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.3e-90 337.4 347 57.6
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 3.7e-90 335.9 346 57.8
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 3.7e-90 335.9 346 57.8
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 2.4e-89 333.2 346 56.9
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 2.0e-88 330.1 346 56.4
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.7e-87 327.0 346 57.2
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 6.5e-87 325.1 348 55.7
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 1.6e-85 320.5 338 56.2
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 8.0e-85 318.2 340 56.8
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.8e-84 317.0 346 55.2
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 4.0e-84 315.8 315 59.7
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 9.8e-83 311.2 295 60.7
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 4.9e-82 308.9 343 56.0
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.8e-81 307.0 344 54.9
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 2.4e-81 306.6 334 51.2
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 1.2e-80 304.3 346 54.3
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 5.9e-80 302.0 346 53.5
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.0e-79 301.2 335 51.9
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 2.3e-79 300.1 345 52.8
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 8.6e-79 298.1 343 56.6
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 1.1e-78 297.7 341 54.0
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.9e-78 297.0 345 53.3
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 9.5e-78 294.7 343 54.5
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 6.8e-76 288.5 341 53.1
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 2.2e-74 283.5 285 61.4
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.9e-74 283.1 345 49.0
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 7.0e-73 278.5 296 58.8
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 1.6e-72 277.3 264 61.0
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 1.6e-72 277.3 284 59.9
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 4.6e-72 275.8 303 57.8
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 3.9e-71 272.7 270 61.9
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.1e-70 271.2 346 48.8
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 3.4e-67 259.6 345 48.1
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.1e-65 254.6 314 50.0
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 5.0e-63 245.7 291 50.2
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 2.8e-61 240.0 350 42.3
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 2.3e-60 236.9 339 43.7
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 1.5e-59 234.2 345 44.9
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 1.7e-58 230.7 356 45.2
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 9.2e-57 224.9 354 44.1
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 4.6e-56 222.6 138 90.6
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 6.6e-55 218.8 296 47.6
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 6.2e-53 212.2 343 38.5
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 1.2e-51 208.0 239 53.6
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.9e-50 203.4 254 50.8
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 1.2e-43 181.4 185 51.9
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 1.2e-43 181.4 152 68.4
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 6.4e-42 175.6 199 53.3
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.2e-41 172.9 172 63.4
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.2e-40 171.4 297 43.4
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 2.0e-35 154.1 322 38.2
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.7e-34 151.0 321 37.7
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 2.2e-26 124.0 291 37.1
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 2.4e-25 120.6 314 33.4
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 2.4e-25 120.6 314 33.4
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 2.4e-25 120.6 145 53.1
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 3.8e-18 96.7 127 55.1
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 9.3e-17 92.0 55 90.9
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 1.9e-14 84.3 111 52.3
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 4.3e-14 83.2 54 81.5
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 2.8e-13 80.5 291 31.3
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 1.8e-07 61.2 131 42.7
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 3.9e-07 60.1 125 41.6


User provided reference genes

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