Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 4.0e-54 214.5 110 100.0
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 4.0e-54 214.5 110 100.0
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 1.6e-31 139.4 93 75.3
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 4.7e-31 137.9 93 74.2
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 4.7e-31 137.9 93 74.2
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.1e-27 126.7 93 67.7
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.1e-27 126.7 93 67.7
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 4.1e-27 124.8 92 67.4
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 4.1e-27 124.8 91 68.1
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.2e-26 123.2 95 64.2
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 7.8e-26 120.6 93 64.5
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 1.3e-25 119.8 93 64.5
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 1.3e-25 119.8 93 64.5
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 1.3e-25 119.8 95 63.2
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 1.3e-25 119.8 90 67.8
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.3e-25 119.0 91 64.8
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.3e-25 119.0 91 64.8
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 3.0e-25 118.6 93 63.4
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 3.0e-25 118.6 91 64.8
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 3.0e-25 118.6 91 64.8
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 3.0e-25 118.6 93 63.4
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.9e-25 118.2 94 60.6
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 6.6e-25 117.5 95 61.1
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 6.6e-25 117.5 93 63.4
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 8.6e-25 117.1 94 59.6
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 8.6e-25 117.1 93 65.6
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 1.1e-24 116.7 91 63.7
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 1.5e-24 116.3 94 61.7
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 1.5e-24 116.3 93 61.3
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 3.3e-24 115.2 94 61.7
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 3.3e-24 115.2 93 62.4
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 3.3e-24 115.2 90 63.3
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 3.3e-24 115.2 87 64.4
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 5.6e-24 114.4 91 61.5
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 5.6e-24 114.4 93 62.4
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 5.6e-24 114.4 93 61.3
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 7.3e-24 114.0 93 61.3
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 7.3e-24 114.0 94 61.7
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 9.5e-24 113.6 91 62.6
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 9.5e-24 113.6 94 60.6
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 9.5e-24 113.6 91 62.6
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 1.2e-23 113.2 93 60.2
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 1.6e-23 112.8 93 58.1
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.6e-23 112.8 91 62.6
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 1.6e-23 112.8 93 61.3
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 1.6e-23 112.8 94 59.6
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 2.1e-23 112.5 94 60.6
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 2.1e-23 112.5 93 60.2
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 3.6e-23 111.7 95 61.1
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 3.6e-23 111.7 93 60.2
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 3.6e-23 111.7 90 61.1
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 4.7e-23 111.3 91 60.4
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 6.2e-23 110.9 94 58.5
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 8.1e-23 110.5 93 63.4
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 1.1e-22 110.2 91 60.4
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 1.1e-22 110.2 89 60.7
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 1.4e-22 109.8 91 61.5
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 1.4e-22 109.8 91 61.5
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 1.4e-22 109.8 96 58.3
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.4e-22 109.8 91 59.3
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 1.8e-22 109.4 96 57.3
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.8e-22 109.4 94 56.4
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 2.4e-22 109.0 114 53.5
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 2.4e-22 109.0 89 60.7
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 2.4e-22 109.0 91 59.3
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 2.4e-22 109.0 94 59.6
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 3.1e-22 108.6 94 56.4
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 3.1e-22 108.6 91 59.3
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 3.1e-22 108.6 91 59.3
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 4.0e-22 108.2 91 58.2
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 4.0e-22 108.2 91 59.3
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 5.2e-22 107.8 91 59.3
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 6.8e-22 107.5 94 56.4
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 6.8e-22 107.5 95 53.7
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 8.9e-22 107.1 102 54.9
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 1.2e-21 106.7 94 56.4
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 1.2e-21 106.7 91 58.2
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 1.5e-21 106.3 93 57.0
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 1.5e-21 106.3 92 57.6
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 1.5e-21 106.3 91 59.3
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 1.5e-21 106.3 91 58.2
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 2.0e-21 105.9 94 58.5
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 2.6e-21 105.5 94 55.3
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 2.6e-21 105.5 93 55.9
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 2.6e-21 105.5 91 58.2
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 2.6e-21 105.5 91 58.2
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 2.6e-21 105.5 91 58.2
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 2.6e-21 105.5 93 62.4
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 2.6e-21 105.5 94 56.4
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 4.4e-21 104.8 94 56.4
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 4.4e-21 104.8 94 56.4
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 5.8e-21 104.4 90 57.8
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 5.8e-21 104.4 91 59.3
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 7.6e-21 104.0 94 53.2
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 9.9e-21 103.6 96 52.1
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 9.9e-21 103.6 96 52.1
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.3e-20 103.2 96 52.1
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 1.7e-20 102.8 94 54.3
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 1.7e-20 102.8 94 54.3
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 1.7e-20 102.8 94 54.3
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 1.7e-20 102.8 94 54.3
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 1.7e-20 102.8 94 54.3
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 1.7e-20 102.8 98 54.1
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 2.2e-20 102.4 94 55.3
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 2.2e-20 102.4 90 56.7
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 2.2e-20 102.4 109 51.4
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.9e-20 102.1 94 52.1
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 4.9e-20 101.3 91 56.0
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 4.9e-20 101.3 83 59.0
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 8.4e-20 100.5 93 51.6
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 1.9e-19 99.4 93 51.6
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 2.4e-19 99.0 93 51.6
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 3.2e-19 98.6 94 53.2
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 1.6e-18 96.3 85 56.5
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 2.7e-18 95.5 103 49.5
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 6.0e-18 94.4 71 67.6
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 7.8e-18 94.0 84 52.4
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 1.3e-17 93.2 96 50.0
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 6.6e-17 90.9 93 54.8
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 1.5e-16 89.7 65 69.2
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 3.3e-16 88.6 67 67.2
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 4.3e-16 88.2 65 66.2
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 5.6e-16 87.8 65 66.2
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 5.6e-16 87.8 65 67.7
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 1.6e-15 86.3 87 50.6
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 2.1e-15 85.9 77 57.1
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.4e-14 83.2 106 43.4
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 4.0e-14 81.6 92 46.7
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.2e-13 80.1 65 61.5
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 1.2e-13 80.1 89 46.1
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 4.4e-13 78.2 87 49.4
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 5.8e-13 77.8 60 65.0
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 1.6e-10 69.7 63 54.0
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 3.5e-10 68.6 91 38.5
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 8.1e-07 57.4 72 44.4


User provided reference genes

Program Settings