Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G157.22 Capsicum annuum HOM05D003919 ORTHO05D004906 0.0e+00 4977.9 2437 100.0
Sopen02g003520 Solanum pennellii HOM05D003919 ORTHO05D004906 0.0e+00 4472.5 2351 92.3
Solyc02g014190.4 Solanum lycopersicum HOM05D003919 ORTHO05D004906 0.0e+00 4375.5 2351 90.7
Peaxi162Scf00363g00329 Petunia axillaris HOM05D003919 ORTHO05D004906 0.0e+00 4214.8 2348 87.1
Nitab4.5_0003853g0020 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 3531.1 2351 75.6
Nitab4.5_0000405g0040 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 3520.7 2351 75.6
Cc11_g02410 Coffea canephora HOM05D003919 ORTHO05D004906 0.0e+00 3449.4 2355 70.4
CSS0046709 Camellia sinensis var. sinensis HOM05D003919 ORTHO05D004906 0.0e+00 3447.5 2346 71.5
Actinidia04322 Actinidia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 3398.2 2352 70.3
Cfa008737 Carpinus fangiana HOM05D003919 ORTHO05D004906 0.0e+00 3393.6 2355 69.6
CiPaw.05G168700 Carya illinoinensis HOM05D003919 ORTHO05D004906 0.0e+00 3378.2 2356 68.9
DCAR_026901 Daucus carota HOM05D003919 ORTHO05D004906 0.0e+00 3364.7 2346 68.6
QL03p046003 Quercus lobata HOM05D003919 ORTHO05D004906 0.0e+00 3351.2 2351 68.9
Migut.J01108 Erythranthe guttata HOM05D003919 ORTHO05D004906 0.0e+00 3347.4 2346 68.3
Thecc.02G160300 Theobroma cacao HOM05D003919 ORTHO05D004906 0.0e+00 3347.0 2354 68.4
Ciclev10030469m.g Citrus clementina HOM05D003919 ORTHO05D004906 0.0e+00 3340.1 2350 68.0
Atru.chr11.1166 Acer truncatum HOM05D003919 ORTHO05D004906 0.0e+00 3339.3 2347 68.1
RcHm_v2.0_Chr4g0446631 Rosa chinensis HOM05D003919 ORTHO05D004906 0.0e+00 3334.3 2356 68.2
Haze_11754 Corylus avellana HOM05D003919 ORTHO05D004906 0.0e+00 3331.2 2471 66.2
FvH4_4g36870 Fragaria vesca HOM05D003919 ORTHO05D004906 0.0e+00 3330.0 2351 68.0
Prupe.1G347000 Prunus persica HOM05D003919 ORTHO05D004906 0.0e+00 3329.7 2355 68.5
vmacro10895 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 0.0e+00 3329.3 2433 67.1
Duzib132G0455 Durio zibethinus HOM05D003919 ORTHO05D004906 0.0e+00 3315.8 2353 67.8
FAN17G2968 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 3313.5 2351 67.7
MD16G1001800 Malus domestica HOM05D003919 ORTHO05D004906 0.0e+00 3307.3 2353 67.9
Gohir.D12G137500 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 3296.1 2354 67.4
Gorai.008G149000 Gossypium raimondii HOM05D003919 ORTHO05D004906 0.0e+00 3291.9 2354 67.2
ECA233G1217 Erigeron canadensis HOM05D003919 ORTHO05D004906 0.0e+00 3233.4 2349 66.9
TWI53G0046 Tripterygium wilfordii HOM05D003919 ORTHO05D004906 0.0e+00 3233.4 2353 66.2
Lsat_1_v5_gn_8_31660 Lactuca sativa HOM05D003919 ORTHO05D004906 0.0e+00 3232.2 2353 67.5
HanXRQChr12g0366421 Helianthus annuus HOM05D003919 ORTHO05D004906 0.0e+00 3219.1 2356 66.6
FAN07G2510 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 3215.2 2348 66.3
Rhsim09G0081500 Rhododendron simsii HOM05D003919 ORTHO05D004906 0.0e+00 3210.6 2273 68.6
Sabra05G0077100 Salix brachista HOM05D003919 ORTHO05D004906 0.0e+00 3210.2 2355 65.6
SGA_v2.0_scaffold17G08205 Striga asiatica HOM05D003919 ORTHO05D004906 0.0e+00 3210.2 2352 66.1
Potri.005G093000 Populus trichocarpa HOM05D003919 ORTHO05D004906 0.0e+00 3207.9 2355 65.9
Sed0027848 Sechium edule HOM05D003919 ORTHO05D004906 0.0e+00 3193.7 2347 65.4
Nn4g24949 Nelumbo nucifera HOM05D003919 ORTHO05D004906 0.0e+00 3190.2 2357 65.1
Hund24370 Selenicereus undatus HOM05D003919 ORTHO05D004906 0.0e+00 3190.2 2354 65.3
Gohir.A12G134051 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 3182.5 2354 65.5
CsaV3_7G030590 Cucumis sativus L. HOM05D003919 ORTHO05D004906 0.0e+00 3176.3 2353 64.9
MELO3C023597.2 Cucumis melo HOM05D003919 ORTHO05D004906 0.0e+00 3172.9 2353 65.0
Lj2g0026278 Lotus japonicus HOM05D003919 ORTHO05D004906 0.0e+00 3167.9 2356 65.3
Medtr1g037310 Medicago truncatula HOM05D003919 ORTHO05D004906 0.0e+00 3167.5 2356 65.4
Glyma.20G003400 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 3165.2 2350 64.9
Ca_25292_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 0.0e+00 3161.7 2356 65.4
TPR.G8246 Trifolium pratense HOM05D003919 ORTHO05D004906 0.0e+00 3159.8 2357 65.0
PSO782G3793 Papaver somniferum HOM05D003919 ORTHO05D004906 0.0e+00 3150.5 2359 64.7
AUR62015231 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 3142.8 2350 64.9
Eucgr.J00863 Eucalyptus grandis HOM05D003919 ORTHO05D004906 0.0e+00 3141.7 2345 64.9
AUR62017695 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 3134.7 2350 64.6
THA.LOC104819381 Tarenaya hassleriana HOM05D003919 ORTHO05D004906 0.0e+00 3123.6 2351 64.1
Ah.01g012280 Amaranthus hybridus HOM05D003919 ORTHO05D004906 0.0e+00 3118.2 2351 64.2
ClCG09G004560 Citrullus lanatus HOM05D003919 ORTHO05D004906 0.0e+00 3112.8 2430 62.7
Carub.0006s2090 Capsella rubella HOM05D003919 ORTHO05D004906 0.0e+00 3099.3 2347 63.6
Psat6g099280 Pisum sativum HOM05D003919 ORTHO05D004906 0.0e+00 3098.1 2382 63.7
Thhalv10003499m.g Eutrema salsugineum HOM05D003919 ORTHO05D004906 0.0e+00 3096.2 2348 63.3
CARHR190420 Cardamine hirsuta HOM05D003919 ORTHO05D004906 0.0e+00 3093.9 2345 63.3
A03p46400 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 3092.8 2345 63.2
AL6G34300 Arabidopsis lyrata HOM05D003919 ORTHO05D004906 0.0e+00 3091.2 2347 63.6
BraA03t13766Z Brassica rapa HOM05D003919 ORTHO05D004906 0.0e+00 3090.8 2345 63.2
Aa31LG11G2600 Aethionema arabicum HOM05D003919 ORTHO05D004906 0.0e+00 3083.1 2348 63.2
AT5G23110 Arabidopsis thaliana HOM05D003919 ORTHO05D004906 0.0e+00 3079.7 2347 63.5
PGR044G0490 Punica granatum HOM05D003919 ORTHO05D004906 0.0e+00 3077.3 2351 63.0
BolC7t44964H Brassica oleracea HOM05D003919 ORTHO05D004906 0.0e+00 3072.7 2345 63.2
Sp2g24010 Schrenkiella parvula HOM05D003919 ORTHO05D004906 0.0e+00 3050.4 2345 62.6
EL10Ac9g22945 Beta vulgaris HOM05D003919 ORTHO05D004906 0.0e+00 3049.2 2358 63.3
Aqoxy3G04259 Aquilegia oxysepala HOM05D003919 ORTHO05D004906 0.0e+00 3035.4 2356 62.3
FAN12G0111 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 2931.7 2246 64.2
ATR0618G139 Amborella trichopoda HOM05D003919 ORTHO05D004906 0.0e+00 2917.1 2347 60.5
Glyma.09G282200 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 2870.9 2172 63.6
CDE08G0505 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 0.0e+00 2840.8 2348 58.2
COL.COLO4_13755 Corchorus olitorius HOM05D003919 ORTHO05D004906 0.0e+00 2831.2 2035 67.1
Zm00001eb066370 Zea mays HOM05D003919 ORTHO05D004906 0.0e+00 2788.1 2360 56.9
TAR374G1487 Trochodendron aralioides HOM05D003919 ORTHO05D004906 0.0e+00 2766.5 2008 66.2
Os04g0675101 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 0.0e+00 2759.2 2348 57.4
Manes.04G066100 Manihot esculenta HOM05D003919 ORTHO05D004906 0.0e+00 2743.8 1994 65.2
Sc06g0007940 Simmondsia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 2590.8 1954 64.0
SEGI_11727 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 0.0e+00 2547.7 2297 54.5
GSVIVG01012044001 Vitis vinifera HOM05D003919 ORTHO05D004906 0.0e+00 2361.6 2348 54.0
arahy.Tifrunner.gnm1.ann1.FE7SUA Arachis hypogaea HOM05D003919 ORTHO05D004906 0.0e+00 2358.6 1768 65.9
Mapoly0175s0011 Marchantia polymorpha HOM05D003919 ORTHO05D004906 0.0e+00 2325.8 2379 49.6
C07p44420 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 2308.5 1844 60.8
Pp3c9_15860 Physcomitrium patens HOM05D003919 ORTHO05D004906 0.0e+00 2283.8 2362 48.8
AagrBONN_evm.TU.Sc2ySwM_344.4345 Anthoceros agrestis HOM05D003919 ORTHO05D004906 0.0e+00 2279.2 2372 48.5
Oeu055859.1 Olea europaea HOM05D003919 ORTHO05D004906 0.0e+00 2148.6 2223 51.7
SMO164G0254 Selaginella moellendorffii HOM05D003919 ORTHO05D004906 0.0e+00 2040.4 2353 45.0
Lj6A719G43 Lonicera japonica HOM05D003919 ORTHO05D004906 0.0e+00 1826.6 1182 74.6
Lalb_Chr04g0258931 Lupinus albus HOM05D003919 ORTHO05D004906 0.0e+00 1825.8 2353 42.6
Lj6C719G10 Lonicera japonica HOM05D003919 ORTHO05D004906 0.0e+00 1663.3 1115 72.0
Dinv11717 Davidia involucrata HOM05D003919 ORTHO05D004906 0.0e+00 1605.9 1060 72.5
MCO02G364 Micromonas commoda HOM05D003919 ORTHO05D004906 0.0e+00 1276.5 2580 33.9
Cpa.g.sc0.155 Carica papaya HOM05D003919 ORTHO05D004906 0.0e+00 1189.5 1095 56.4
Cre01.g044850 Chlamydomonas reinhardtii HOM05D003919 ORTHO05D004906 1.8e-279 967.6 3153 27.1
Gohir.A12G133950 Gossypium hirsutum HOM05D003919 ORTHO05D004906 4.8e-277 959.5 641 70.2
Cpa.g.sc0.156 Carica papaya HOM05D003919 ORTHO05D004906 1.0e-274 951.8 1348 41.5
HPP92_012909 Vanilla planifolia HOM05D003919 ORTHO05D004906 1.7e-274 951.0 703 67.3
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 1.2e-182 646.0 761 46.6
SEGI_18724 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 3.4e-182 644.4 622 50.5
HPP92_012908 Vanilla planifolia HOM05D003919 ORTHO05D004906 2.7e-150 538.5 559 47.9
VMungo0251G1503 Vigna mungo HOM05D003919 ORTHO05D004906 1.4e-146 526.2 350 72.9
FAN25G1432 Fragaria x ananassa HOM05D003919 ORTHO05D004906 3.3e-140 505.0 597 46.2
TAR374G0728 Trochodendron aralioides HOM05D003919 ORTHO05D004906 2.1e-139 502.3 320 75.9
arahy.Tifrunner.gnm1.ann1.5S361I Arachis hypogaea HOM05D003919 ORTHO05D004906 8.9e-138 496.9 333 74.5
FAN14G1298 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.7e-136 492.7 842 36.7
SEGI_14080 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 6.4e-136 490.7 332 72.0
Psat4g123280 Pisum sativum HOM05D003919 ORTHO05D004906 2.6e-121 442.2 363 57.3
HPP92_012876 Vanilla planifolia HOM05D003919 ORTHO05D004906 5.8e-121 441.0 1909 24.8
FAN22G1631 Fragaria x ananassa HOM05D003919 ORTHO05D004906 4.9e-120 438.0 267 80.1
FAN27G1315 Fragaria x ananassa HOM05D003919 ORTHO05D004906 9.0e-98 364.0 456 45.8
Cpa.g.sc0.157 Carica papaya HOM05D003919 ORTHO05D004906 9.3e-95 354.0 241 71.0
MBI03_g34502_MAGBIO Magnolia biondii HOM05D003919 ORTHO05D004906 9.3e-95 354.0 239 71.1
Phvul.003G005926 Phaseolus vulgaris HOM05D003919 ORTHO05D004906 9.6e-92 344.0 1210 25.9
FAN04G3043 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.8e-82 313.2 210 67.1
CiPaw.05G168800 Carya illinoinensis HOM05D003919 ORTHO05D004906 1.4e-79 303.5 1274 24.9
SEGI_33576 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 8.7e-77 294.3 223 59.6
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 3.2e-71 275.8 521 36.5
CDE08G0032 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 1.7e-59 236.9 614 25.9
Psat0s1455g0040 Pisum sativum HOM05D003919 ORTHO05D004906 3.7e-59 235.7 204 60.3
Gohir.A12G134001 Gossypium hirsutum HOM05D003919 ORTHO05D004906 2.0e-57 229.9 164 63.4
CAN.G157.23 Capsicum annuum HOM05D003919 ORTHO05D004906 8.8e-53 214.5 521 29.0
Cpa.g.sc0.159 Carica papaya HOM05D003919 ORTHO05D004906 2.0e-52 213.4 121 81.8
COL.COLO4_13756 Corchorus olitorius HOM05D003919 ORTHO05D004906 1.8e-50 206.8 115 86.1
C07p44430 Brassica napus HOM05D003919 ORTHO05D004906 2.7e-49 203.0 109 89.0
Oeu055860.1 Olea europaea HOM05D003919 ORTHO05D004906 7.7e-49 201.4 107 88.8
MBI03_g34501_MAGBIO Magnolia biondii HOM05D003919 ORTHO05D004906 2.2e-48 199.9 113 84.1
VMungo1383G1759 Vigna mungo HOM05D003919 ORTHO05D009038 3.8e-48 199.1 216 44.9
HPP92_012883 Vanilla planifolia HOM05D000456 ORTHO05D004906 4.0e-45 189.1 108 81.5
SEGI_22186 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.3e-43 184.1 108 78.7
Psat1g095160 Pisum sativum HOM05D003919 ORTHO05D004906 1.1e-42 181.0 151 53.6
SEGI_20628 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 4.1e-42 179.1 157 56.1
HPP92_012910 Vanilla planifolia HOM05D003919 ORTHO05D004906 2.1e-38 166.8 94 81.9
VMungo1383G1539 Vigna mungo HOM05D003919 ORTHO05D004906 1.0e-37 164.5 163 50.3
TAR374G1126 Trochodendron aralioides HOM05D003919 ORTHO05D036952 4.4e-28 132.5 168 36.9
FAN28G0606 Fragaria x ananassa HOM05D001114 ORTHO05D000940 4.7e-14 85.9 82 48.8
HPP92_012877 Vanilla planifolia HOM05D003919 ORTHO05D004906 8.1e-14 85.1 623 23.6
FvH4_5g39264 Fragaria vesca HOM05D000731 ORTHO05D004906 1.8e-13 84.0 49 83.7
FAN08G1746 Fragaria x ananassa HOM05D003919 ORTHO05D005006 1.8e-13 84.0 83 57.8
GSVIVG01012339001 Vitis vinifera HOM05D003353 ORTHO05D003751 1.5e-12 80.9 136 41.2
Psat4g139360 Pisum sativum HOM05D007669 ORTHO05D009624 2.2e-11 77.0 65 53.8
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 8.6e-08 65.1 58 51.7
Oeu025294.1 Olea europaea HOM05D003919 ORTHO05D036952 1.1e-07 64.7 142 28.2
SEGI_09016 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.5e-07 64.3 46 60.9
Lalb_Chr01g0013021 Lupinus albus HOM05D003919 ORTHO05D004906 4.3e-07 62.8 37 70.3


User provided reference genes

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