Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1563.1 Capsicum annuum HOM05D002496 ORTHO05D002787 9.8e-105 383.6 218 100.0
CAN.G309.103 Capsicum annuum HOM05D002496 ORTHO05D002787 2.1e-75 286.2 194 80.4
Sopen12g035030 Solanum pennellii HOM05D002496 ORTHO05D002787 4.0e-74 282.0 170 88.2
Solyc12g100360.1 Solanum lycopersicum HOM05D002496 ORTHO05D002787 5.2e-74 281.6 170 87.6
CAN.G1703.18 Capsicum annuum HOM05D002496 ORTHO05D002787 6.9e-74 281.2 170 88.2
CAN.G309.130 Capsicum annuum HOM05D002496 ORTHO05D002787 2.6e-73 279.3 197 77.2
CAN.G309.134 Capsicum annuum HOM05D002496 ORTHO05D002787 3.4e-73 278.9 197 81.2
Peaxi162Scf00738g00312 Petunia axillaris HOM05D002496 ORTHO05D002787 7.6e-73 277.7 170 85.9
CAN.G1579.7 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-72 276.9 170 86.5
CAN.G1751.12 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-72 276.9 170 87.6
CAN.G1579.14 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-71 273.9 170 85.9
Nitab4.5_0000827g0130 Nicotiana tabacum HOM05D002496 ORTHO05D002787 1.1e-71 273.9 170 85.3
CAN.G1833.6 Capsicum annuum HOM05D002496 ORTHO05D002787 1.9e-71 273.1 170 86.5
CAN.G2119.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.9e-71 273.1 165 89.1
CAN.G309.146 Capsicum annuum HOM05D002496 ORTHO05D002787 1.9e-71 273.1 218 69.3
CAN.G1703.3 Capsicum annuum HOM05D002496 ORTHO05D002787 2.4e-71 272.7 170 85.9
CAN.G2026.1 Capsicum annuum HOM05D002496 ORTHO05D002787 2.4e-71 272.7 170 86.5
CAN.G575.132 Capsicum annuum HOM05D002496 ORTHO05D002787 1.6e-70 270.0 197 80.7
CAN.G134.151 Capsicum annuum HOM05D002496 ORTHO05D002787 2.7e-70 269.2 194 77.8
CAN.G134.139 Capsicum annuum HOM05D002496 ORTHO05D002787 4.6e-70 268.5 162 88.3
CAN.G1353.19 Capsicum annuum HOM05D002496 ORTHO05D002787 7.8e-70 267.7 170 84.1
CAN.G2802.1 Capsicum annuum HOM05D002496 ORTHO05D002787 7.8e-70 267.7 175 84.0
CAN.G134.148 Capsicum annuum HOM05D002048 ORTHO05D002146 4.3e-68 261.9 166 84.3
CAN.G309.113 Capsicum annuum HOM05D002496 ORTHO05D002787 4.3e-68 261.9 170 82.9
CAN.G575.112 Capsicum annuum HOM05D002496 ORTHO05D002787 5.3e-66 255.0 163 85.3
CAN.G309.135 Capsicum annuum HOM05D002496 ORTHO05D002787 1.5e-60 236.9 170 77.6
CAN.G1353.22 Capsicum annuum HOM05D002496 ORTHO05D002787 1.6e-59 233.4 158 78.5
CAN.G309.107 Capsicum annuum HOM05D002496 ORTHO05D002787 5.3e-58 228.4 155 80.6
CAN.G4338.1 Capsicum annuum HOM05D002496 ORTHO05D002787 2.0e-57 226.5 128 93.0
Dinv11478 Davidia involucrata HOM05D002496 ORTHO05D002787 2.0e-57 226.5 170 72.4
CSS0046180 Camellia sinensis var. sinensis HOM05D002496 ORTHO05D002787 5.8e-57 224.9 170 69.4
Oeu023700.1 Olea europaea HOM05D002496 ORTHO05D002787 2.9e-56 222.6 170 70.0
Dinv13473 Davidia involucrata HOM05D002496 ORTHO05D002787 4.9e-56 221.9 170 68.2
CAN.G309.123 Capsicum annuum HOM05D002496 ORTHO05D002787 1.9e-55 219.9 143 81.1
CAN.G134.142 Capsicum annuum HOM05D002496 ORTHO05D002787 2.4e-55 219.5 139 84.2
CAN.G1579.2 Capsicum annuum HOM05D002518 ORTHO05D002630 3.2e-55 219.2 145 81.4
Oeu023952.2 Olea europaea HOM05D002496 ORTHO05D002787 5.5e-55 218.4 170 69.4
Actinidia39346 Actinidia chinensis HOM05D002496 ORTHO05D002787 1.6e-54 216.9 170 68.2
CAN.G309.99 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-53 213.8 198 65.2
ClCG03G014540 Citrullus lanatus HOM05D002496 ORTHO05D002787 6.7e-53 211.5 187 63.6
GSVIVG01025470001 Vitis vinifera HOM05D002496 ORTHO05D002787 8.7e-53 211.1 185 64.9
Cc01_g00070 Coffea canephora HOM05D002496 ORTHO05D002787 3.3e-52 209.1 170 66.5
Ciclev10014012m.g Citrus clementina HOM05D002496 ORTHO05D002787 4.3e-52 208.8 186 63.4
Manes.03G087600 Manihot esculenta HOM05D002496 ORTHO05D002787 5.6e-52 208.4 179 64.2
Rhsim01G0184300 Rhododendron simsii HOM05D002496 ORTHO05D002787 5.6e-52 208.4 170 67.6
CAN.G309.132 Capsicum annuum HOM05D002496 ORTHO05D002787 1.6e-51 206.8 135 80.7
CiPaw.13G177100 Carya illinoinensis HOM05D002496 ORTHO05D002787 2.8e-51 206.1 183 62.3
MELO3C015577.2 Cucumis melo HOM05D002496 ORTHO05D002787 3.7e-51 205.7 187 62.6
CsaV3_1G041650 Cucumis sativus L. HOM05D002496 ORTHO05D002787 3.7e-51 205.7 187 62.0
Atru.chr3.2106 Acer truncatum HOM05D002496 ORTHO05D002787 4.8e-51 205.3 186 62.9
SalBow2G0058 Salvia bowleyana HOM05D002496 ORTHO05D002787 4.8e-51 205.3 197 58.4
Haze_22941 Corylus avellana HOM05D002496 ORTHO05D002787 6.2e-51 204.9 186 62.9
Cfa009562 Carpinus fangiana HOM05D002496 ORTHO05D002787 1.1e-50 204.1 186 62.9
Lj2A763T47 Lonicera japonica HOM05D002496 ORTHO05D002787 1.1e-50 204.1 170 67.6
QL01p003675 Quercus lobata HOM05D002496 ORTHO05D002787 1.1e-50 204.1 186 62.4
TAR369G0007 Trochodendron aralioides HOM05D002496 ORTHO05D002787 1.8e-50 203.4 186 61.8
CAN.G134.146 Capsicum annuum HOM05D002518 ORTHO05D002630 2.4e-50 203.0 180 66.1
MD11G1003500 Malus domestica HOM05D002496 ORTHO05D002787 2.4e-50 203.0 185 61.6
vmacro12599 Vaccinium macrocarpon HOM05D002496 ORTHO05D002787 4.0e-50 202.2 170 65.9
MSTRG.20937 Avicennia marina HOM05D002496 ORTHO05D002787 5.3e-50 201.8 170 63.5
MBI01_g25638_MAGBIO Magnolia biondii HOM05D002496 ORTHO05D002787 6.9e-50 201.4 188 61.2
SGA_v2.0_scaffold3G01729 Striga asiatica HOM05D002496 ORTHO05D002787 6.9e-50 201.4 197 57.9
Migut.D02589 Erythranthe guttata HOM05D002496 ORTHO05D002787 9.0e-50 201.1 198 60.1
Thecc.09G199700 Theobroma cacao HOM05D002496 ORTHO05D002787 1.5e-49 200.3 186 62.4
Migut.D02566 Erythranthe guttata HOM05D002496 ORTHO05D002787 2.0e-49 199.9 198 59.6
CAN.G8.32 Capsicum annuum HOM05D002496 ORTHO05D002787 2.6e-49 199.5 152 76.3
MD03G1003600 Malus domestica HOM05D002496 ORTHO05D002787 2.6e-49 199.5 188 59.6
FAN16G0954 Fragaria x ananassa HOM05D002496 ORTHO05D002787 4.5e-49 198.7 185 60.5
Prupe.6G003300 Prunus persica HOM05D002496 ORTHO05D002787 5.8e-49 198.4 185 60.0
CAN.G1783.2 Capsicum annuum HOM05D002496 ORTHO05D002787 7.6e-49 198.0 163 71.2
Sed0022657 Sechium edule HOM05D002496 ORTHO05D002787 1.0e-48 197.6 182 62.1
CAN.G309.125 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-48 197.2 143 76.9
Duzib168G0200 Durio zibethinus HOM05D002496 ORTHO05D002787 1.7e-48 196.8 186 61.3
CiPaw.14G137000 Carya illinoinensis HOM05D002496 ORTHO05D002787 2.2e-48 196.4 186 60.2
FAN25G0679 Fragaria x ananassa HOM05D002496 ORTHO05D002787 3.8e-48 195.7 185 60.0
CAN.G1669.8 Capsicum annuum HOM05D002496 ORTHO05D002787 6.5e-48 194.9 159 69.8
Sed0000966 Sechium edule HOM05D002496 ORTHO05D002787 6.5e-48 194.9 187 62.0
TAR623G0218 Trochodendron aralioides HOM05D002496 ORTHO05D002787 6.5e-48 194.9 186 59.1
CAN.G134.157 Capsicum annuum HOM05D002496 ORTHO05D002787 8.4e-48 194.5 165 67.9
Phvul.002G247600 Phaseolus vulgaris HOM05D002496 ORTHO05D002787 8.4e-48 194.5 182 61.0
Potri.003G221100 Populus trichocarpa HOM05D002496 ORTHO05D002787 1.1e-47 194.1 188 61.2
Glyma.08G125500 Glycine max HOM05D002496 ORTHO05D002787 1.4e-47 193.7 182 60.4
CAN.G2119.2 Capsicum annuum HOM05D002496 ORTHO05D002787 4.2e-47 192.2 170 66.5
VMungo0251G3571 Vigna mungo HOM05D002496 ORTHO05D002787 5.5e-47 191.8 183 60.7
PGR119G1355 Punica granatum HOM05D002496 ORTHO05D002787 7.1e-47 191.4 182 62.1
Potri.001G003900 Populus trichocarpa HOM05D002496 ORTHO05D002787 1.2e-46 190.7 185 61.1
TPR.G6803 Trifolium pratense HOM05D002496 ORTHO05D002787 1.2e-46 190.7 184 60.3
FvH4_3g45741 Fragaria vesca HOM05D002496 ORTHO05D002787 1.6e-46 190.3 185 58.4
Medtr8g088520 Medicago truncatula HOM05D002496 ORTHO05D002787 3.5e-46 189.1 184 59.8
Psat7g064160 Pisum sativum HOM05D002496 ORTHO05D002787 3.5e-46 189.1 184 60.3
Sabra03G0164600 Salix brachista HOM05D002496 ORTHO05D002787 3.5e-46 189.1 188 60.1
Ca_17842_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 4.6e-46 188.7 184 60.3
CAN.G2177.2 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-45 187.2 192 63.0
Gohir.A03G022300 Gossypium hirsutum HOM05D002496 ORTHO05D002787 1.3e-45 187.2 181 59.7
Gohir.D03G146400 Gossypium hirsutum HOM05D002496 ORTHO05D002787 1.3e-45 187.2 181 60.2
Nn7g35861 Nelumbo nucifera HOM05D002496 ORTHO05D002787 1.3e-45 187.2 186 59.1
Sc16g0012220 Simmondsia chinensis HOM05D002496 ORTHO05D002787 1.3e-45 187.2 186 56.5
Thhalv10011175m.g Eutrema salsugineum HOM05D002496 ORTHO05D002787 1.8e-45 186.8 179 59.8
PSO384G1583 Papaver somniferum HOM05D002496 ORTHO05D002787 2.3e-45 186.4 186 58.6
Gorai.003G153800 Gossypium raimondii HOM05D002496 ORTHO05D002787 3.0e-45 186.0 181 59.7
PSO339G0705 Papaver somniferum HOM05D002496 ORTHO05D002787 3.0e-45 186.0 186 58.6
DCAR_029934 Daucus carota HOM05D002496 ORTHO05D002787 3.9e-45 185.7 171 64.9
Eucgr.J01766 Eucalyptus grandis HOM05D002496 ORTHO05D002787 3.9e-45 185.7 209 56.0
HanXRQChr02g0057261 Helianthus annuus HOM05D002496 ORTHO05D002787 1.5e-44 183.7 170 62.9
Sp1g41030 Schrenkiella parvula HOM05D002496 ORTHO05D002787 1.5e-44 183.7 179 59.8
CANSAT11G2110 Cannabis sativa HOM05D002496 ORTHO05D002787 2.5e-44 183.0 181 59.7
HanXRQChr13g0405751 Helianthus annuus HOM05D002496 ORTHO05D002787 2.5e-44 183.0 171 62.0
Lalb_Chr13g0295581 Lupinus albus HOM05D002496 ORTHO05D002787 2.5e-44 183.0 182 58.8
Sabra01G0002600 Salix brachista HOM05D002496 ORTHO05D002787 2.5e-44 183.0 185 58.9
BcaB04g16962 Brassica carinata HOM05D002496 ORTHO05D002787 4.3e-44 182.2 177 59.9
Actinidia30436 Actinidia chinensis HOM05D002496 ORTHO05D002787 5.7e-44 181.8 157 65.6
Carub.0001s4386 Capsella rubella HOM05D002496 ORTHO05D002787 5.7e-44 181.8 179 58.7
CARHR045010 Cardamine hirsuta HOM05D002496 ORTHO05D002787 5.7e-44 181.8 179 59.2
AL1G63400 Arabidopsis lyrata HOM05D002496 ORTHO05D002787 7.4e-44 181.4 179 59.2
ECA233G0145 Erigeron canadensis HOM05D002496 ORTHO05D002787 1.6e-43 180.3 171 62.0
CAN.G309.100 Capsicum annuum HOM05D002496 ORTHO05D002787 2.1e-43 179.9 256 46.1
Aa31LG10G1150 Aethionema arabicum HOM05D002496 ORTHO05D002787 2.8e-43 179.5 184 58.2
AT1G55350 Arabidopsis thaliana HOM05D002496 ORTHO05D002787 3.7e-43 179.1 179 58.7
BolC6t36109H Brassica oleracea HOM05D002496 ORTHO05D002787 8.2e-43 177.9 179 57.0
EL10Ac4g10386 Beta vulgaris HOM05D002496 ORTHO05D002787 1.8e-42 176.8 189 54.5
A06p00230 Brassica napus HOM05D002496 ORTHO05D002787 3.1e-42 176.0 179 57.5
BraA06t23239Z Brassica rapa HOM05D002496 ORTHO05D002787 3.1e-42 176.0 179 57.5
RcHm_v2.0_Chr5g0083811 Rosa chinensis HOM05D002496 ORTHO05D002787 1.2e-41 174.1 185 56.8
BcaC08g43619 Brassica carinata HOM05D002496 ORTHO05D002787 2.6e-41 172.9 207 52.7
THA.LOC104810325 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 2.6e-41 172.9 178 56.2
CAN.G309.148 Capsicum annuum HOM05D002496 ORTHO05D002787 5.9e-41 171.8 188 58.5
unitig_899.g15353 Utricularia gibba HOM05D002496 ORTHO05D002787 1.0e-40 171.0 170 57.1
C06p10330 Brassica napus HOM05D002496 ORTHO05D002787 1.7e-40 170.2 179 56.4
Hund21627 Selenicereus undatus HOM05D002496 ORTHO05D002787 2.9e-40 169.5 186 52.7
AUR62019163 Chenopodium quinoa HOM05D002496 ORTHO05D002787 1.4e-39 167.2 190 52.6
THA.LOC104822681 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 1.9e-39 166.8 178 55.1
AUR62040902 Chenopodium quinoa HOM05D002496 ORTHO05D002787 4.2e-39 165.6 190 52.1
Cpa.g.sc119.40 Carica papaya HOM05D002496 ORTHO05D002787 7.2e-39 164.9 184 54.3
CAN.G309.110 Capsicum annuum HOM05D002496 ORTHO05D002787 1.5e-36 157.1 143 65.0
Aqoxy1G00475 Aquilegia oxysepala HOM05D002496 ORTHO05D002787 1.9e-36 156.8 186 52.7
Os02g0709400 Oryza sativa ssp. japonica HOM05D002496 ORTHO05D002787 7.4e-36 154.8 212 56.1
CAN.G1353.10 Capsicum annuum HOM05D002496 ORTHO05D002787 8.2e-35 151.4 174 56.3
ATR0827G153 Amborella trichopoda HOM05D002496 ORTHO05D002787 2.0e-33 146.7 172 55.2
Lsat_1_v5_gn_6_53141 Lactuca sativa HOM05D002496 ORTHO05D002787 2.0e-33 146.7 170 54.1
arahy.Tifrunner.gnm1.ann1.3G7H7K Arachis hypogaea HOM05D002496 ORTHO05D002787 2.6e-33 146.4 182 49.5
CAN.G1353.3 Capsicum annuum HOM05D002496 ORTHO05D002787 7.7e-33 144.8 141 61.7
TWI34G0193 Tripterygium wilfordii HOM05D002496 ORTHO05D002787 1.0e-32 144.4 155 58.1
Zm00001eb014030 Zea mays HOM05D002496 ORTHO05D002787 1.9e-31 140.2 210 55.2
HPP92_024699 Vanilla planifolia HOM05D002496 ORTHO05D002787 2.1e-30 136.7 184 45.7
Glyma.05G167200 Glycine max HOM05D002496 ORTHO05D002787 1.5e-28 130.6 211 44.1
CAN.G309.143 Capsicum annuum HOM05D002496 ORTHO05D002630 5.7e-28 128.6 85 77.6
CAN.G1353.27 Capsicum annuum HOM05D002496 ORTHO05D002787 7.4e-28 128.3 182 48.9
CAN.G309.121 Capsicum annuum HOM05D002496 ORTHO05D002787 4.1e-26 122.5 87 79.3
Lj4g0028195 Lotus japonicus HOM05D002496 ORTHO05D002787 6.9e-26 121.7 182 45.1
C03p92660 Brassica napus HOM05D002496 ORTHO05D002787 9.1e-26 121.3 170 49.4
CDE02G0627 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 1.2e-25 120.9 189 45.5
arahy.Tifrunner.gnm1.ann1.P751E4 Arachis hypogaea HOM05D002496 ORTHO05D002787 2.0e-25 120.2 182 44.0
SEGI_17528 Sequoiadendron giganteum HOM05D002496 ORTHO05D002787 1.1e-23 114.4 201 42.8
SHI31315 Sapria himalayana HOM05D002496 ORTHO05D002787 5.5e-23 112.1 178 44.9
CAN.G309.114 Capsicum annuum HOM05D002496 ORTHO05D002787 3.6e-22 109.4 75 76.0
COL.COLO4_05794 Corchorus olitorius HOM05D002496 ORTHO05D002787 1.4e-18 97.4 104 53.8
CAN.G2101.1 Capsicum annuum HOM05D002496 ORTHO05D002787 2.5e-15 86.7 58 77.6
arahy.Tifrunner.gnm1.ann1.WZQ8WP Arachis hypogaea HOM05D002496 ORTHO05D002787 6.3e-11 72.0 173 36.4
CAN.G309.144 Capsicum annuum HOM05D002496 ORTHO05D002146 2.0e-09 67.0 138 38.4
CAN.G743.3 Capsicum annuum HOM05D002496 ORTHO05D002787 7.2e-07 58.5 29 93.1
Pp3c17_17550 Physcomitrium patens HOM05D002496 ORTHO05D002787 1.2e-06 57.8 187 33.2
SMO332G0020 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 2.1e-06 57.0 182 34.6
SMO334G0130 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 2.1e-06 57.0 182 34.6


User provided reference genes

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