Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1721.4 846 100.0
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1695.6 870 96.6
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1566.2 849 90.7
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 0.0e+00 1372.1 729 91.8
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 0.0e+00 1294.6 720 86.8
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1241.1 851 70.0
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1232.2 852 68.9
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1228.0 847 68.9
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1226.1 852 69.2
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1223.4 852 69.1
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1219.1 850 68.9
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1219.1 852 69.1
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1218.8 850 68.8
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1214.1 850 68.6
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1213.4 850 68.8
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1211.4 853 68.5
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1204.5 882 65.5
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1201.0 849 67.5
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1200.3 887 65.8
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1196.4 846 68.2
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1187.2 845 68.4
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1182.5 857 67.4
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1179.1 852 66.2
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1177.9 845 66.5
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1177.2 852 66.1
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1176.0 855 66.4
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1175.2 808 70.2
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1174.8 849 66.8
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1174.5 855 66.8
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1174.1 845 66.9
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1172.9 851 66.7
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1169.1 855 66.3
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1169.1 849 65.6
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1168.7 846 66.4
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1167.5 972 60.2
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1166.8 859 65.4
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1166.8 855 66.3
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1166.8 856 65.1
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1165.2 849 64.9
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1154.0 856 65.8
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1153.3 858 65.4
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1152.1 823 67.3
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1151.0 870 64.6
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1149.8 857 65.3
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1147.5 847 65.9
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1146.7 853 64.7
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1144.0 858 64.3
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1143.6 851 65.6
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1143.6 858 64.9
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1142.9 853 65.7
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1137.9 853 64.5
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1137.1 855 64.2
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1134.4 811 67.3
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1131.7 853 64.7
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1129.0 855 64.1
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1126.3 853 64.6
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1125.5 857 64.2
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1125.2 848 65.6
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1124.4 854 64.4
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1120.5 855 65.0
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1117.8 855 63.3
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1117.1 853 63.5
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1117.1 853 63.8
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1114.8 850 63.6
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1114.0 851 63.0
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1112.8 850 63.8
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1110.5 855 62.8
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1110.5 850 63.3
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1109.4 857 63.6
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1105.9 850 62.6
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 0.0e+00 1104.7 840 64.4
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1102.4 854 63.9
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1096.6 857 63.4
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1096.6 855 62.9
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1096.3 853 62.7
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1096.3 851 62.5
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1095.9 854 62.6
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1095.1 854 62.9
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1093.6 855 63.0
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1089.7 856 63.0
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1086.2 886 61.3
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1081.2 870 62.0
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 4.4e-310 1067.8 869 60.0
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 7.5e-310 1067.0 844 60.2
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 1.4e-308 1062.8 845 61.3
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 5.4e-308 1060.8 889 59.5
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 9.4e-305 1050.0 858 59.2
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 6.8e-303 1043.9 852 59.7
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 1.5e-302 1042.7 856 60.4
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 1.5e-302 1042.7 767 62.5
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 2.8e-301 1038.5 849 59.8
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.7e-298 1029.2 837 59.7
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 1.7e-298 1029.2 845 59.2
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 1.9e-297 1025.8 769 61.4
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 2.5e-297 1025.4 760 65.8
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 1.8e-295 1019.2 754 63.7
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 3.0e-295 1018.5 780 62.1
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 4.0e-295 1018.1 776 63.3
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.5e-294 1016.1 779 61.9
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 7.5e-294 1013.8 852 59.7
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 9.8e-294 1013.4 783 61.6
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 7.0e-292 1007.3 854 60.0
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 1.6e-291 1006.1 780 62.8
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.6e-291 1006.1 772 62.8
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 5.9e-291 1004.2 779 60.8
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 5.0e-290 1001.1 781 62.1
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 7.3e-289 997.3 782 61.6
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 5.8e-286 987.6 784 61.6
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 1.7e-285 986.1 805 60.1
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 6.4e-285 984.2 908 54.8
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 6.0e-283 977.6 851 57.1
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 9.5e-281 970.3 847 56.6
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.2e-280 969.9 880 56.7
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 3.6e-280 968.4 783 60.9
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 2.4e-276 955.7 729 62.8
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.0e-274 950.3 629 75.2
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 6.0e-267 924.5 854 55.7
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.2e-259 900.2 807 56.3
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 3.6e-248 862.1 855 50.8
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.1e-244 850.5 439 91.3
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 3.5e-243 845.5 650 64.3
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 1.2e-238 830.5 826 50.2
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 3.2e-236 822.4 771 53.7
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 2.5e-233 812.8 598 66.7
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 2.9e-229 799.3 799 51.4
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 1.9e-228 796.6 855 46.9
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 4.3e-225 785.4 788 49.6
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 8.2e-216 754.6 661 59.0
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 4.5e-206 722.2 789 48.7
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 2.4e-199 699.9 466 70.2
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.7e-197 693.7 681 50.2
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 4.5e-182 642.5 586 56.7
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.8e-179 633.3 432 68.3
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 4.3e-172 609.4 668 49.6
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 5.2e-170 602.4 430 67.0
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 2.4e-167 593.6 532 55.6
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 2.4e-167 593.6 468 61.3
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 3.6e-163 579.7 870 39.0
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 7.6e-153 545.4 339 79.9
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 1.1e-143 515.0 573 49.6
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 5.5e-127 459.5 777 37.8
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 2.3e-125 454.1 321 66.4
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 7.4e-124 449.1 432 55.3
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 3.8e-120 436.8 406 54.2
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 3.9e-117 426.8 271 73.8
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 8.8e-101 372.5 405 50.1
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 1.1e-98 365.5 382 51.6
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 5.5e-95 353.2 361 52.4
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 7.2e-95 352.8 208 83.2
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 1.4e-90 338.6 242 66.5
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 3.5e-81 307.4 524 34.4
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 1.7e-75 288.5 812 30.2
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 5.6e-63 246.9 202 59.9
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 4.7e-54 217.2 140 70.0
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 2.7e-49 201.4 120 85.0
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 3.5e-49 201.1 172 54.7
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 6.6e-48 196.8 104 82.7
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 6.6e-40 170.2 88 93.2
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.5e-39 169.1 100 73.0
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 5.6e-39 167.2 192 46.4
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 2.4e-37 161.8 82 90.2
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 3.8e-27 127.9 198 38.4
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 2.1e-22 112.1 71 76.1
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 3.4e-20 104.8 83 60.2
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 4.5e-20 104.4 69 69.6
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 1.7e-19 102.4 95 55.8
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 5.1e-16 90.9 59 67.8
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 1.6e-14 85.9 84 48.8
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 3.7e-14 84.7 45 82.2
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.8e-13 82.4 41 85.4
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 5.3e-13 80.9 40 87.5
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 4.9e-11 74.3 96 40.6
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 6.4e-11 73.9 95 41.1
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 6.4e-11 73.9 49 71.4
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 3.9e-08 64.7 59 49.2
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 3.7e-06 58.2 64 48.4


User provided reference genes

Program Settings